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3DRobot is a program devoted for automated generation of diverse and well-packed protein structure decoys. Given a native structure as input, 3DRobot first identifies diverse structure scaffolds from a non-redundant PDB library. Restraint-free fragment reassembly simulations are then performed to construct diverse full-length models. The final decoys are further refined at atomic-level by a two-step iterative energy minimization procedure to improve the hydrogen-binding networks and steric overlaps of the structures. 3DRobot aims to provide high-quality protein structural decoy sets for designing and training protein folding force field and folding simulation methods (>> More about the server ...)


[Output example] [Forum] [About]
Please copy and paste your native structure below in PDB format. Sample PDB input

Or upload the native PDB file:

Number of decoys: (Recommended range [10, 1000])

RMSD (or TM-score) cutoff: RMSD (Recommended range [5, 20]Å) TM-score (Recommended range [0.1, 0.9])

Email: (mandatory, where results will be sent to. Only academic email accounts are acceptable.)

ID: (optional, your given name to this protein)

3DRobot Resource

Reference:

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