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BioLiP
Download all results in tab-seperated text for 1438 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 3bk9:A (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    402 3bk9:A (2.15) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    403 3bk9:A (2.15) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    404 3bk9:B (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    405 3bk9:B (2.15) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    406 3bk9:C (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    407 3bk9:C (2.15) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    408 3bk9:D (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    409 3bk9:D (2.15) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    410 3bk9:D (2.15) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    411 3bk9:E (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    412 3bk9:E (2.15) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    413 3bk9:F (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    414 3bk9:F (2.15) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    415 3bk9:G (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    416 3bk9:H (2.15) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    417 3bk9:H (2.15) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    418 3csm:A (3.0) BS01 TRP 5.4.99.5 GO:0003824 ... P32178 9384560
    419 3csm:B (3.0) BS01 TRP 5.4.99.5 GO:0003824 ... P32178 9384560
    420 3dsl:A (2.7) BS06 TRP 3.4.24.49 GO:0004222 ... O93523 18831982
    421 3dsl:B (2.7) BS02 TRP 3.4.24.49 GO:0004222 ... O93523 18831982
    422 3e08:A (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    423 3e08:A (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    424 3e08:A (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    425 3e08:A (1.9) BS05 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    426 3e08:B (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    427 3e08:B (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    428 3e08:C (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    429 3e08:C (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    430 3e08:C (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    431 3e08:D (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    432 3e08:D (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    433 3e08:D (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    434 3e08:E (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    435 3e08:E (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    436 3e08:F (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    437 3e08:F (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    438 3e08:F (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    439 3e08:G (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    440 3e08:G (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    441 3e08:G (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    442 3e08:H (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    443 3e08:H (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    444 3e08:H (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    445 3e2t:A (1.9) BS03 TRP 1.14.16.4 GO:0004497 ... P70080 18937498
    446 3efi:A (1.75) BS02 TRP 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18774300
    447 3f3a:A (2.0) BS01 TRP ? GO:0005886 ... O67854 19074341 MOAD: Ki=64800nM
    PDBbind: -logKd/Ki=4.19, Ki=64.8uM
    448 3f3a:A (2.0) BS02 TRP ? GO:0005886 ... O67854 19074341 MOAD: Ki=64800nM
    PDBbind: -logKd/Ki=4.19, Ki=64.8uM
    449 3f3a:A (2.0) BS03 TRP ? GO:0005886 ... O67854 19074341 MOAD: Ki=64800nM
    PDBbind: -logKd/Ki=4.19, Ki=64.8uM
    450 3f3a:A (2.0) BS04 TRP ? GO:0005886 ... O67854 19074341 MOAD: Ki=64800nM
    PDBbind: -logKd/Ki=4.19, Ki=64.8uM
    451 3fhj:A (2.65) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    452 3fhj:B (2.65) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    453 3fhj:C (2.65) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    454 3fhj:D (2.65) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    455 3fhj:E (2.65) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    456 3fhj:F (2.65) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    457 3fi0:A (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    458 3fi0:B (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    459 3fi0:C (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    460 3fi0:D (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    461 3fi0:E (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    462 3fi0:F (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    463 3fi0:G (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    464 3fi0:H (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    465 3fi0:I (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    466 3fi0:J (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    467 3fi0:K (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    468 3fi0:L (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    469 3fi0:M (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    470 3fi0:N (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    471 3fi0:O (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    472 3fi0:P (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    473 3fi0:Q (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    474 3fi0:R (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 19174517
    475 3hv0:A (2.42) BS01 TRP 6.1.1.2 GO:0000166 ... Q5CYP8 21255615
    476 3hv0:B (2.42) BS01 TRP 6.1.1.2 GO:0000166 ... Q5CYP8 21255615
    477 3i4x:A (2.1) BS02 TRP 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    478 3i4x:B (2.1) BS02 TRP 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    479 3kgf:A (2.0) BS02 TRP 2.5.1.54 GO:0003849 ... O53512 20667835
    480 3kgf:B (2.0) BS03 TRP 2.5.1.54 GO:0003849 ... O53512 20667835
    481 3kt6:A (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    482 3kt6:B (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    483 3kt6:C (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    484 3kt6:D (2.8) BS01 TRP 6.1.1.2 GO:0000166 ... Q12109 20123733
    485 3lft:A (1.35) BS01 TRP ? N/A A0A0H2UPV6 N/A
    486 3lft:B (1.35) BS01 TRP ? N/A A0A0H2UPV6 N/A
    487 3nue:A (2.5) BS02 TRP 2.5.1.54 GO:0003849 ... O53512 20667835
    488 3nue:B (2.5) BS03 TRP 2.5.1.54 GO:0003849 ... O53512 20667835
    489 3qs4:A (2.631) BS01 TRP ? GO:0005886 ... O67854 21952050 PDBbind: -logKd/Ki=4.68, Kd=21.0uM
    490 3qs4:A (2.631) BS02 TRP ? GO:0005886 ... O67854 21952050 PDBbind: -logKd/Ki=4.68, Kd=21.0uM
    491 3qs4:A (2.631) BS03 TRP ? GO:0005886 ... O67854 21952050 PDBbind: -logKd/Ki=4.68, Kd=21.0uM
    492 3qs5:A (2.6) BS01 TRP ? GO:0005886 ... O67854 21952050 PDBbind: -logKd/Ki=4.71, Kd=19.6uM
    493 3qs6:A (2.801) BS01 TRP ? GO:0005886 ... O67854 21952050 PDBbind: -logKd/Ki=4.89, Kd=12.8uM
    494 3rzi:A (1.95) BS03 TRP 2.5.1.54 GO:0003849 ... O53512 22154807 PDBbind: -logKd/Ki=5.33, Kd=4.7uM
    495 3rzi:B (1.95) BS03 TRP 2.5.1.54 GO:0003849 ... O53512 22154807 PDBbind: -logKd/Ki=5.33, Kd=4.7uM
    496 3sz3:A (1.5) BS01 TRP 6.1.1.2 GO:0000166 ... Q9KNV7 N/A
    497 3tmn:E (1.7) BS02 TRP 3.4.24.27 GO:0004222 ... P00800 3343246
    498 3tze:A (2.6) BS01 TRP 6.1.1.2 GO:0000166 ... O96771 28303005
    499 3tze:B (2.6) BS01 TRP 6.1.1.2 GO:0000166 ... O96771 28303005
    500 3tzl:A (2.154) BS02 TRP 6.1.1.2 GO:0000166 ... Q9PIB4 N/A
    501 3tzl:B (2.154) BS02 TRP 6.1.1.2 GO:0000166 ... Q9PIB4 N/A
    502 3x27:A (2.481) BS01 TRP ? N/A R4QPW9 26120001
    503 3x27:A (2.481) BS02 TRP ? N/A R4QPW9 26120001
    504 3x27:B (2.481) BS01 TRP ? N/A R4QPW9 26120001
    505 3x27:B (2.481) BS02 TRP ? N/A R4QPW9 26120001
    506 3x27:C (2.481) BS01 TRP ? N/A R4QPW9 26120001
    507 3x27:C (2.481) BS02 TRP ? N/A R4QPW9 26120001
    508 3x27:D (2.481) BS01 TRP ? N/A R4QPW9 26120001
    509 3x27:D (2.481) BS02 TRP ? N/A R4QPW9 26120001
    510 3zte:A (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    511 3zte:A (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    512 3zte:B (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    513 3zte:B (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    514 3zte:C (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    515 3zte:C (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    516 3zte:D (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    517 3zte:D (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    518 3zte:E (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    519 3zte:E (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    520 3zte:F (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    521 3zte:F (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    522 3zte:G (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    523 3zte:G (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    524 3zte:H (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    525 3zte:H (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    526 3zte:I (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    527 3zte:I (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    528 3zte:J (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    529 3zte:J (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    530 3zte:K (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    531 3zte:K (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    532 3zte:L (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    533 3zte:L (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    534 3zte:M (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    535 3zte:M (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    536 3zte:N (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    537 3zte:N (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    538 3zte:O (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    539 3zte:O (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    540 3zte:P (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    541 3zte:P (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    542 3zte:Q (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    543 3zte:Q (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    544 3zte:R (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    545 3zte:R (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    546 3zte:S (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    547 3zte:S (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    548 3zte:T (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    549 3zte:T (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    550 3zte:U (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    551 3zte:U (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    552 3zte:V (2.41) BS01 TRP ? GO:0003723 ... A5A665 N/A
    553 3zte:V (2.41) BS02 TRP ? GO:0003723 ... A5A665 N/A
    554 3zzl:A (1.67) BS01 TRP ? GO:0003723 ... Q9KCC6 21984911
    555 3zzl:A (1.67) BS02 TRP ? GO:0003723 ... Q9KCC6 21984911
    556 3zzl:A (1.67) BS03 TRP ? GO:0003723 ... Q9KCC6 21984911
    557 3zzl:B (1.67) BS01 TRP ? GO:0003723 ... Q9KCC6 21984911
    558 3zzl:B (1.67) BS02 TRP ? GO:0003723 ... Q9KCC6 21984911
    559 3zzl:B (1.67) BS03 TRP ? GO:0003723 ... Q9KCC6 21984911
    560 3zzl:C (1.67) BS01 TRP ? GO:0003723 ... Q9KCC6 21984911
    561 3zzl:C (1.67) BS02 TRP ? GO:0003723 ... Q9KCC6 21984911
    562 3zzq:A (1.75) BS01 TRP ? GO:0003723 ... P19466 21984911
    563 3zzq:A (1.75) BS02 TRP ? GO:0003723 ... P19466 21984911
    564 3zzq:A (1.75) BS03 TRP ? GO:0003723 ... P19466 21984911
    565 3zzq:B (1.75) BS01 TRP ? GO:0003723 ... P19466 21984911
    566 3zzq:B (1.75) BS02 TRP ? GO:0003723 ... P19466 21984911
    567 3zzq:B (1.75) BS03 TRP ? GO:0003723 ... P19466 21984911
    568 3zzq:C (1.75) BS01 TRP ? GO:0003723 ... P19466 21984911
    569 3zzq:C (1.75) BS02 TRP ? GO:0003723 ... P19466 21984911
    570 3zzq:C (1.75) BS03 TRP ? GO:0003723 ... P19466 21984911
    571 3zzq:D (1.75) BS01 TRP ? GO:0003723 ... P19466 21984911
    572 3zzq:D (1.75) BS02 TRP ? GO:0003723 ... P19466 21984911
    573 3zzq:D (1.75) BS03 TRP ? GO:0003723 ... P19466 21984911
    574 3zzq:D (1.75) BS04 TRP ? GO:0003723 ... P19466 21984911
    575 3zzq:E (1.75) BS01 TRP ? GO:0003723 ... P19466 21984911
    576 3zzq:E (1.75) BS02 TRP ? GO:0003723 ... P19466 21984911
    577 3zzq:E (1.75) BS03 TRP ? GO:0003723 ... P19466 21984911
    578 3zzq:F (1.75) BS01 TRP ? GO:0003723 ... P19466 21984911
    579 3zzq:F (1.75) BS02 TRP ? GO:0003723 ... P19466 21984911
    580 3zzs:A (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    581 3zzs:A (1.49) BS02 TRP ? GO:0003723 ... Q9X6J6 21984911
    582 3zzs:B (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    583 3zzs:B (1.49) BS02 TRP ? GO:0003723 ... Q9X6J6 21984911
    584 3zzs:C (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    585 3zzs:D (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    586 3zzs:D (1.49) BS02 TRP ? GO:0003723 ... Q9X6J6 21984911
    587 3zzs:E (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    588 3zzs:E (1.49) BS02 TRP ? GO:0003723 ... Q9X6J6 21984911
    589 3zzs:F (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    590 3zzs:G (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    591 3zzs:G (1.49) BS02 TRP ? GO:0003723 ... Q9X6J6 21984911
    592 3zzs:H (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    593 3zzs:H (1.49) BS02 TRP ? GO:0003723 ... Q9X6J6 21984911
    594 3zzs:I (1.49) BS01 TRP ? GO:0003723 ... Q9X6J6 21984911
    595 4b27:A (2.72) BS01 TRP ? GO:0003723 ... P19466 22970197
    596 4b27:A (2.72) BS02 TRP ? GO:0003723 ... P19466 22970197
    597 4b27:B (2.72) BS01 TRP ? GO:0003723 ... P19466 22970197
    598 4b27:B (2.72) BS02 TRP ? GO:0003723 ... P19466 22970197
    599 4b27:C (2.72) BS01 TRP ? GO:0003723 ... P19466 22970197
    600 4b27:C (2.72) BS02 TRP ? GO:0003723 ... P19466 22970197
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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