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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 42884 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a0j:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P35033 9757092
    2 1a0s:P (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    3 1a0s:Q (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    4 1a0s:R (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    5 1a0t:P (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    6 1a0t:Q (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    7 1a0t:R (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    8 1a14:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    9 1a25:A (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    10 1a25:A (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    11 1a25:A (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    12 1a25:B (2.7) BS01 CA 2.7.11.13 N/A P68403 9817842
    13 1a25:B (2.7) BS02 CA 2.7.11.13 N/A P68403 9817842
    14 1a25:B (2.7) BS03 CA 2.7.11.13 N/A P68403 9817842
    15 1a29:A (2.74) BS01 CA ? GO:0000922 ... P62157 9799490
    16 1a29:A (2.74) BS02 CA ? GO:0000922 ... P62157 9799490
    17 1a29:A (2.74) BS03 CA ? GO:0000922 ... P62157 9799490
    18 1a29:A (2.74) BS04 CA ? GO:0000922 ... P62157 9799490
    19 1a2q:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    20 1a2q:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    21 1a2t:A (1.96) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    22 1a2u:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    23 1a2x:A (2.3) BS01 CA ? GO:0005509 ... P02586 9560191
    24 1a2x:A (2.3) BS02 CA ? GO:0005509 ... P02586 9560191
    25 1a3t:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    26 1a3u:A (2.05) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    27 1a3v:A (2.2) BS01 CA 3.1.31.1 GO:0003676 ... P00644 9260275
    28 1a47:A (2.56) BS06 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    29 1a47:A (2.56) BS07 CA 2.4.1.19 GO:0003824 ... P26827 9488711
    30 1a4g:A (2.2) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    31 1a4g:B (2.2) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    32 1a4q:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    33 1a4q:B (1.9) BS01 CA 3.2.1.18 GO:0004308 ... P27907 9526556
    34 1a4v:A (1.8) BS01 CA 2.4.1.22 GO:0000139 ... P00709 9537992
    35 1a4v:A (1.8) BS02 CA 2.4.1.22 GO:0000139 ... P00709 9537992
    36 1a75:A (1.9) BS01 CA ? GO:0005509 ... P02621 N/A
    37 1a75:A (1.9) BS02 CA ? GO:0005509 ... P02621 N/A
    38 1a75:B (1.9) BS01 CA ? GO:0005509 ... P02621 N/A
    39 1a75:B (1.9) BS02 CA ? GO:0005509 ... P02621 N/A
    40 1a85:A (2.0) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    41 1a85:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    42 1a86:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    43 1a86:A (2.0) BS03 CA 3.4.24.34 GO:0004222 ... P22894 9655333
    44 1a8a:A (1.9) BS01 CA ? GO:0001786 ... P14668 7583670
    45 1a8a:A (1.9) BS02 CA ? GO:0001786 ... P14668 7583670
    46 1a8a:A (1.9) BS03 CA ? GO:0001786 ... P14668 7583670
    47 1a8a:A (1.9) BS04 CA ? GO:0001786 ... P14668 7583670
    48 1a8a:A (1.9) BS05 CA ? GO:0001786 ... P14668 7583670
    49 1a8a:A (1.9) BS06 CA ? GO:0001786 ... P14668 7583670
    50 1a8a:A (1.9) BS07 CA ? GO:0001786 ... P14668 7583670
    51 1a8a:A (1.9) BS08 CA ? GO:0001786 ... P14668 7583670
    52 1a8a:A (1.9) BS09 CA ? GO:0001786 ... P14668 7583670
    53 1a8a:A (1.9) BS10 CA ? GO:0001786 ... P14668 7583670
    54 1a8b:A (1.9) BS01 CA ? GO:0001786 ... P14668 7583670
    55 1a8b:A (1.9) BS02 CA ? GO:0001786 ... P14668 7583670
    56 1a8b:A (1.9) BS03 CA ? GO:0001786 ... P14668 7583670
    57 1a8b:A (1.9) BS04 CA ? GO:0001786 ... P14668 7583670
    58 1a8b:A (1.9) BS05 CA ? GO:0001786 ... P14668 7583670
    59 1a8b:A (1.9) BS06 CA ? GO:0001786 ... P14668 7583670
    60 1a8b:A (1.9) BS07 CA ? GO:0001786 ... P14668 7583670
    61 1a8b:A (1.9) BS08 CA ? GO:0001786 ... P14668 7583670
    62 1a8b:A (1.9) BS09 CA ? GO:0001786 ... P14668 7583670
    63 1acc:A (2.1) BS01 CA ? GO:0005515 ... P13423 9039918
    64 1acc:A (2.1) BS02 CA ? GO:0005515 ... P13423 9039918
    65 1ad5:A (2.6) BS01 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    66 1ad5:A (2.6) BS03 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    67 1ad5:B (2.6) BS01 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    68 1ad5:B (2.6) BS02 CA 2.7.10.2 GO:0004672 ... P08631 9024658
    69 1aei:A (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    70 1aei:A (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    71 1aei:A (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    72 1aei:A (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    73 1aei:B (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    74 1aei:B (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    75 1aei:B (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    76 1aei:B (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    77 1aei:C (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    78 1aei:C (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    79 1aei:C (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    80 1aei:C (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    81 1aei:D (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    82 1aei:D (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    83 1aei:D (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    84 1aei:D (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    85 1aei:E (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    86 1aei:E (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    87 1aei:E (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    88 1aei:E (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    89 1aei:F (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    90 1aei:F (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    91 1aei:F (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    92 1aei:F (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    93 1aex:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    94 1af0:A (1.8) BS02 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    95 1af0:A (1.8) BS03 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    96 1af0:A (1.8) BS04 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    97 1af0:A (1.8) BS05 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    98 1af0:A (1.8) BS06 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    99 1af0:A (1.8) BS07 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    100 1af0:A (1.8) BS08 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    101 1af4:A (2.6) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9113975
    102 1afa:1 (2.0) BS02 CA ? N/A P19999 8636086
    103 1afa:1 (2.0) BS03 CA ? N/A P19999 8636086
    104 1afa:2 (2.0) BS02 CA ? N/A P19999 8636086
    105 1afa:2 (2.0) BS03 CA ? N/A P19999 8636086
    106 1afa:2 (2.0) BS04 CA ? N/A P19999 8636086
    107 1afa:3 (2.0) BS02 CA ? N/A P19999 8636086
    108 1afa:3 (2.0) BS03 CA ? N/A P19999 8636086
    109 1afb:1 (1.9) BS01 CA ? N/A P19999 8636086
    110 1afb:1 (1.9) BS02 CA ? N/A P19999 8636086
    111 1afb:2 (1.9) BS01 CA ? N/A P19999 8636086
    112 1afb:2 (1.9) BS02 CA ? N/A P19999 8636086
    113 1afb:2 (1.9) BS03 CA ? N/A P19999 8636086
    114 1afb:3 (1.9) BS01 CA ? N/A P19999 8636086
    115 1afb:3 (1.9) BS02 CA ? N/A P19999 8636086
    116 1afd:1 (2.0) BS01 CA ? N/A P19999 8636086
    117 1afd:1 (2.0) BS02 CA ? N/A P19999 8636086
    118 1afd:2 (2.0) BS01 CA ? N/A P19999 8636086
    119 1afd:2 (2.0) BS02 CA ? N/A P19999 8636086
    120 1afd:3 (2.0) BS01 CA ? N/A P19999 8636086
    121 1afd:3 (2.0) BS02 CA ? N/A P19999 8636086
    122 1ag9:A (1.8) BS01 CA ? GO:0000166 ... P61949 9416602
    123 1ag9:B (1.8) BS01 CA ? GO:0000166 ... P61949 9416602
    124 1ahr:A (1.8) BS01 CA ? GO:0005509 ... P62149 9195880
    125 1ahr:A (1.8) BS02 CA ? GO:0005509 ... P62149 9195880
    126 1ahr:A (1.8) BS03 CA ? GO:0005509 ... P62149 9195880
    127 1ahr:A (1.8) BS04 CA ? GO:0005509 ... P62149 9195880
    128 1ai4:B (2.35) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    129 1ai5:B (2.36) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    130 1ai6:B (2.55) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    131 1ai7:B (2.5) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    132 1aii:A (1.95) BS01 CA ? GO:0001786 ... P12429 9111038
    133 1aii:A (1.95) BS02 CA ? GO:0001786 ... P12429 9111038
    134 1aii:A (1.95) BS03 CA ? GO:0001786 ... P12429 9111038
    135 1aii:A (1.95) BS04 CA ? GO:0001786 ... P12429 9111038
    136 1aii:A (1.95) BS05 CA ? GO:0001786 ... P12429 9111038
    137 1aj4:A (-1.00) BS01 CA ? GO:0003009 ... P09860 9218458
    138 1aj4:A (-1.00) BS02 CA ? GO:0003009 ... P09860 9218458
    139 1aj4:A (-1.00) BS03 CA ? GO:0003009 ... P09860 9218458
    140 1ajj:A (1.7) BS01 CA ? N/A P01130 9262405
    141 1ajk:A (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    142 1ajk:B (1.8) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    143 1ajn:B (2.36) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    144 1ajo:A (2.07) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    145 1ajo:B (2.07) BS01 CA 3.2.1.73 GO:0004553 ... P23904 9489923
    146 1ajp:B (2.31) BS02 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    147 1ajq:B (2.05) BS01 CA 3.5.1.11 GO:0016787 ... P06875 9813130
    148 1ak9:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    149 1ak9:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    150 1akl:A (2.0) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    151 1akl:A (2.0) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    152 1akl:A (2.0) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    153 1akl:A (2.0) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    154 1akl:A (2.0) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    155 1akl:A (2.0) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    156 1akl:A (2.0) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    157 1akl:A (2.0) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8690704
    158 1aks:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15299934
    159 1ala:A (2.25) BS01 CA ? GO:0001786 ... P17153 8471604
    160 1ala:A (2.25) BS02 CA ? GO:0001786 ... P17153 8471604
    161 1ala:A (2.25) BS03 CA ? GO:0001786 ... P17153 8471604
    162 1alc:A (1.7) BS01 CA ? GO:0003796 ... P12065 2769757
    163 1alv:A (1.9) BS01 CA ? GO:0005509 ... P04574 9228946
    164 1alv:A (1.9) BS02 CA ? GO:0005509 ... P04574 9228946
    165 1alv:A (1.9) BS03 CA ? GO:0005509 ... P04574 9228946
    166 1alv:A (1.9) BS04 CA ? GO:0005509 ... P04574 9228946
    167 1alv:B (1.9) BS01 CA ? GO:0005509 ... P04574 9228946
    168 1alv:B (1.9) BS02 CA ? GO:0005509 ... P04574 9228946
    169 1alv:B (1.9) BS03 CA ? GO:0005509 ... P04574 9228946
    170 1alv:B (1.9) BS04 CA ? GO:0005509 ... P04574 9228946
    171 1alw:A (2.03) BS01 CA ? GO:0005509 ... P04574 9228946
    172 1alw:A (2.03) BS02 CA ? GO:0005509 ... P04574 9228946
    173 1alw:A (2.03) BS03 CA ? GO:0005509 ... P04574 9228946
    174 1alw:A (2.03) BS04 CA ? GO:0005509 ... P04574 9228946
    175 1alw:B (2.03) BS01 CA ? GO:0005509 ... P04574 9228946
    176 1alw:B (2.03) BS02 CA ? GO:0005509 ... P04574 9228946
    177 1alw:B (2.03) BS03 CA ? GO:0005509 ... P04574 9228946
    178 1alw:B (2.03) BS04 CA ? GO:0005509 ... P04574 9228946
    179 1amh:A (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    180 1amh:B (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    181 1amy:A (2.8) BS01 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    182 1amy:A (2.8) BS02 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    183 1amy:A (2.8) BS03 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    184 1an1:E (2.03) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9384562
    185 1anb:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    186 1anc:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    187 1ann:A (2.3) BS01 CA ? GO:0001786 ... P13214 N/A
    188 1ann:A (2.3) BS02 CA ? GO:0001786 ... P13214 N/A
    189 1anw:A (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    190 1anw:A (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    191 1anw:B (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    192 1anw:B (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    193 1anx:A (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    194 1anx:A (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    195 1anx:A (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    196 1anx:A (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    197 1anx:B (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    198 1anx:B (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    199 1anx:B (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    200 1anx:B (1.9) BS04 CA ? GO:0001786 ... P08758 8254674

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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