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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 177 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c8l:A (2.3) BS03 CFF 2.4.1.1 GO:0000166 ... P00489 11368311 MOAD: ic50=0.45mM
    BindingDB: IC50=114000nM
    2 1gfz:A (2.3) BS03 CFF 2.4.1.1 GO:0000166 ... P00489 10924512 MOAD: Ki~0.15mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    BindingDB: IC50=114000nM
    3 1l5q:A (2.25) BS04 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=108uM
    PDBbind: -logKd/Ki=3.97, Kd=108uM
    4 1l5q:A (2.25) BS05 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=108uM
    PDBbind: -logKd/Ki=3.97, Kd=108uM
    5 1l5q:B (2.25) BS05 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=108uM
    6 1l5q:B (2.25) BS06 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=108uM
    7 1l7x:A (2.3) BS04 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=92uM
    PDBbind: -logKd/Ki=4.04, Kd=92uM
    8 1l7x:A (2.3) BS05 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=92uM
    PDBbind: -logKd/Ki=4.04, Kd=92uM
    9 1l7x:B (2.3) BS05 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=92uM
    PDBbind: -logKd/Ki=4.04, Kd=92uM
    10 2a3b:A (1.9) BS01 CFF 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=469uM
    BindingDB: IC50=469000nM
    11 2a3b:A (1.9) BS02 CFF 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=469uM
    BindingDB: IC50=469000nM
    12 2a3b:A (1.9) BS03 CFF 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=469uM
    BindingDB: IC50=469000nM
    13 2a3b:B (1.9) BS01 CFF 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=469uM
    BindingDB: IC50=469000nM
    14 2a3b:B (1.9) BS02 CFF 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=469uM
    BindingDB: IC50=469000nM
    15 3dd1:A (2.57) BS03 CFF 2.4.1.1 GO:0000166 ... P06737 19138846
    16 3dd1:B (2.57) BS04 CFF 2.4.1.1 GO:0000166 ... P06737 19138846
    17 3dds:A (1.8) BS03 CFF 2.4.1.1 GO:0000166 ... P06737 19138846
    18 3dds:B (1.8) BS04 CFF 2.4.1.1 GO:0000166 ... P06737 19138846
    19 3ddw:A (1.9) BS03 CFF 2.4.1.1 GO:0000166 ... P06737 19138846
    20 3ddw:B (1.9) BS04 CFF 2.4.1.1 GO:0000166 ... P06737 19138846
    21 3g6m:A (1.65) BS01 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    22 3g6m:A (1.65) BS02 CFF 3.2.1.14 GO:0000272 ... A9LI60 20829286 MOAD: Ki=19.7mM
    PDBbind: -logKd/Ki=1.71, Ki=19.7mM
    23 3rfm:A (3.598) BS01 CFF ? GO:0001609 ... P29274 21885291 BindingDB: Ki=23400nM
    24 4y4d:A (1.269) BS01 CFF 3.4.23.22 GO:0004190 ... P11838 27139825
    25 5mzp:A (2.1) BS01 CFF ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    26 5t9v:B (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    27 5t9v:E (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    28 5t9v:G (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    29 5t9v:I (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    30 5ta3:B (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    31 5ta3:E (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    32 5ta3:G (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    33 5ta3:I (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    34 5tal:B (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    35 5tal:E (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    36 5tal:G (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    37 5tal:I (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    38 5tam:B (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    39 5tam:E (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    40 5tam:G (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    41 5tam:I (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    42 5tan:B (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    43 5tan:E (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    44 5tan:G (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    45 5tan:I (4.3) BS02 CFF ? GO:0005216 ... P11716 27662087
    46 5tap:B (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    47 5tap:E (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    48 5tap:G (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    49 5tap:I (4.4) BS02 CFF ? GO:0005216 ... P11716 27662087
    50 5taq:B (4.1) BS02 CFF ? GO:0005216 ... P11716 27662087
    51 5taq:E (4.1) BS02 CFF ? GO:0005216 ... P11716 27662087
    52 5taq:G (4.1) BS02 CFF ? GO:0005216 ... P11716 27662087
    53 5taq:I (4.1) BS02 CFF ? GO:0005216 ... P11716 27662087
    54 5tas:B (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    55 5tas:E (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    56 5tas:G (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    57 5tas:I (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    58 5tat:B (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    59 5tat:E (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    60 5tat:G (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    61 5tat:I (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    62 5tau:B (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    63 5tau:E (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    64 5tau:G (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    65 5tau:I (6.2) BS02 CFF ? GO:0005216 ... P11716 27662087
    66 5tav:B (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    67 5tav:E (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    68 5tav:G (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    69 5tav:I (4.8) BS02 CFF ? GO:0005216 ... P11716 27662087
    70 6icn:A (1.65) BS03 CFF 1.14.13.178 GO:0009820 ... H9N289 31412262
    71 6icn:B (1.65) BS03 CFF 1.14.13.178 GO:0009820 ... H9N289 31412262
    72 6icn:C (1.65) BS03 CFF 1.14.13.178 GO:0009820 ... H9N289 31412262
    73 6icp:A (2.2) BS03 CFF 1.14.13.178 GO:0009820 ... H9N289 31412262
    74 6icp:B (2.2) BS03 CFF 1.14.13.178 GO:0009820 ... H9N289 31412262
    75 6icp:C (2.2) BS03 CFF 1.14.13.178 GO:0009820 ... H9N289 31412262
    76 6jhn:A (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    77 6jhn:C (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    78 6jhn:E (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    79 6jhn:G (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    80 6ji0:A (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    81 6ji0:C (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    82 6ji0:E (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    83 6ji0:G (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    84 6jii:B (4.2) BS03 CFF N/A GO:0005216 ... N/A 31278385
    85 6jii:E (4.2) BS03 CFF N/A GO:0005216 ... N/A 31278385
    86 6jii:H (4.2) BS03 CFF N/A GO:0005216 ... N/A 31278385
    87 6jii:K (4.2) BS03 CFF N/A GO:0005216 ... N/A 31278385
    88 6jiu:A (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    89 6jiu:D (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    90 6jiu:G (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    91 6jiu:J (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    92 6jiy:A (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    93 6jiy:D (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    94 6jiy:G (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    95 6jiy:J (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    96 6jrr:A (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    97 6jrr:C (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    98 6jrr:E (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    99 6jrr:G (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    100 6jrs:A (3.7) BS04 CFF N/A GO:0005216 ... N/A 31278385
    101 6jrs:D (3.7) BS04 CFF N/A GO:0005216 ... N/A 31278385
    102 6jrs:G (3.7) BS04 CFF N/A GO:0005216 ... N/A 31278385
    103 6jrs:J (3.7) BS04 CFF N/A GO:0005216 ... N/A 31278385
    104 6m2w:A (3.8) BS01 CFF ? GO:0000166 ... P11716 32807966
    105 6m2w:D (3.8) BS01 CFF ? GO:0000166 ... P11716 32807966
    106 6m2w:G (3.8) BS01 CFF ? GO:0000166 ... P11716 32807966
    107 6m2w:J (3.8) BS01 CFF ? GO:0000166 ... P11716 32807966
    108 6qtl:A (2.25) BS01 CFF N/A N/A N/A N/A
    109 6qtl:B (2.25) BS01 CFF N/A N/A N/A N/A
    110 6qtl:C (2.25) BS01 CFF N/A N/A N/A N/A
    111 6qtl:D (2.25) BS01 CFF N/A N/A N/A N/A
    112 6qtl:E (2.25) BS01 CFF N/A N/A N/A N/A
    113 6qtl:G (2.25) BS01 CFF N/A N/A N/A N/A
    114 6qtl:H (2.25) BS01 CFF N/A N/A N/A N/A
    115 6sf9:A (1.59) BS01 CFF ? GO:0008299 ... Q8WS26 N/A
    116 6tv4:A (1.53) BS01 CFF 3.1.1.98 GO:0016787 ... Q6P988 33033363 MOAD: Kd=85uM
    117 6ug4:A (2.295) BS01 CFF ? GO:0005219 ... Q8A5J2 N/A
    118 6ug4:B (2.295) BS01 CFF ? GO:0005219 ... Q8A5J2 N/A
    119 6ug4:C (2.295) BS01 CFF ? GO:0005219 ... Q8A5J2 N/A
    120 6ug4:D (2.295) BS01 CFF ? GO:0005219 ... Q8A5J2 N/A
    121 6ug4:D (2.295) BS02 CFF ? GO:0005219 ... Q8A5J2 N/A
    122 6ug4:D (2.295) BS03 CFF ? GO:0005219 ... Q8A5J2 N/A
    123 6ug4:E (2.295) BS01 CFF ? GO:0005219 ... Q8A5J2 N/A
    124 6ug4:F (2.295) BS01 CFF ? GO:0005219 ... Q8A5J2 N/A
    125 7d7l:A (2.11) BS02 CFF 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 33864621
    126 7m6a:A (3.36) BS04 CFF ? GO:0000166 ... P11716 34469755
    127 7m6a:B (3.36) BS04 CFF ? GO:0000166 ... P11716 34469755
    128 7m6a:G (3.36) BS04 CFF ? GO:0000166 ... P11716 34469755
    129 7m6a:I (3.36) BS04 CFF ? GO:0000166 ... P11716 34469755
    130 7m6l:A (3.98) BS04 CFF ? GO:0000166 ... P11716 34469755
    131 7m6l:B (3.98) BS04 CFF ? GO:0000166 ... P11716 34469755
    132 7m6l:G (3.98) BS04 CFF ? GO:0000166 ... P11716 34469755
    133 7m6l:I (3.98) BS04 CFF ? GO:0000166 ... P11716 34469755
    134 7pbb:A (1.47) BS04 CFF 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    135 7tzc:A (2.45) BS04 CFF ? GO:0000166 ... P11716 35580609
    136 7tzc:B (2.45) BS04 CFF ? GO:0000166 ... P11716 35580609
    137 7tzc:G (2.45) BS05 CFF ? GO:0000166 ... P11716 35580609
    138 7tzc:I (2.45) BS05 CFF ? GO:0000166 ... P11716 35580609
    139 8drp:A (2.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    140 8drp:B (2.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    141 8drp:C (2.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    142 8drp:D (2.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    143 8dtb:A (3.14) BS01 CFF ? GO:0000166 ... P11716 37224245
    144 8duj:A (3.7) BS01 CFF ? GO:0000166 ... P11716 37224245
    145 8duj:D (3.7) BS01 CFF ? GO:0000166 ... P11716 37224245
    146 8duj:G (3.7) BS01 CFF ? GO:0000166 ... P11716 37224245
    147 8duj:J (3.7) BS01 CFF ? GO:0000166 ... P11716 37224245
    148 8dve:A (3.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    149 8dve:D (3.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    150 8dve:G (3.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    151 8dve:J (3.84) BS01 CFF ? GO:0000166 ... P11716 37224245
    152 8ftg:A (1.13) BS01 CFF N/A N/A N/A 37243579
    153 8ftg:B (1.13) BS01 CFF N/A N/A N/A 37243579
    154 8ftg:C (1.13) BS01 CFF N/A N/A N/A 37243579
    155 8ftg:D (1.13) BS01 CFF N/A N/A N/A 37243579
    156 8ftg:E (1.13) BS01 CFF N/A N/A N/A 37243579
    157 8ftg:F (1.13) BS01 CFF N/A N/A N/A 37243579
    158 8ftg:G (1.13) BS01 CFF N/A N/A N/A 37243579
    159 8ftg:H (1.13) BS01 CFF N/A N/A N/A 37243579
    160 8so1:A (2.05) BS02 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    161 8so1:A (2.05) BS03 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    162 8so2:A (2.15) BS02 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    163 8so2:A (2.15) BS03 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    164 8so2:A (2.15) BS04 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    165 8so2:A (2.15) BS05 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73    		 GO:0002933 ... P08684 37524132
    166 8t2g:A () BS02 CFF N/A N/A N/A N/A
    167 8t2g:B () BS01 CFF N/A N/A N/A N/A
    168 8uzd:A (2.721) BS02 CFF N/A N/A N/A N/A
    169 8uzd:B (2.721) BS02 CFF N/A N/A N/A N/A
    170 8vjk:A (2.92) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    171 8vjk:B (2.92) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    172 8vjk:C (2.92) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    173 8vjk:D (2.92) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    174 8vk4:A (3.56) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    175 8vk4:B (3.56) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    176 8vk4:C (3.56) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    177 8vk4:D (3.56) BS02 CFF ? GO:0000166 ... E9PZQ0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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