SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 101m:A (2.07) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    2 102m:A (1.84) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    3 103m:A (2.07) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    4 104m:A (1.71) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    5 105m:A (2.02) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    6 106m:A (1.99) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    7 107m:A (2.09) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    8 108m:A (2.67) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    9 109m:A (1.83) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    10 10ad:A (3.44) BS01 CA N/A GO:0001666 ... Q12791 41591909
    11 10ad:A (3.44) BS02 CA N/A GO:0001666 ... Q12791 41591909
    12 10ad:A (3.44) BS03 A1E02 N/A GO:0001666 ... Q12791 41591909
    13 10ad:C (3.44) BS01 CA N/A GO:0001666 ... Q12791 41591909
    14 10ad:C (3.44) BS02 CA N/A GO:0001666 ... Q12791 41591909
    15 10ad:C (3.44) BS03 A1E02 N/A GO:0001666 ... Q12791 41591909
    16 10ad:D (3.44) BS01 CA N/A GO:0001666 ... Q12791 41591909
    17 10ad:D (3.44) BS02 CA N/A GO:0001666 ... Q12791 41591909
    18 10ad:D (3.44) BS03 A1E02 N/A GO:0001666 ... Q12791 41591909
    19 10ad:E (3.44) BS01 CA N/A GO:0001666 ... Q12791 41591909
    20 10ad:E (3.44) BS02 CA N/A GO:0001666 ... Q12791 41591909
    21 10ad:E (3.44) BS03 A1E02 N/A GO:0001666 ... Q12791 41591909
    22 10bl:A (2.6) BS01 ADP N/A N/A Q4E2L0 N/A
    23 10bl:B (2.6) BS01 ADP N/A N/A Q4E2L0 N/A
    24 10bm:A (2.49) BS01 AMP N/A GO:0000166 ... Q13UJ9 N/A
    25 10bm:A (2.49) BS02 MG N/A GO:0000166 ... Q13UJ9 N/A
    26 10bm:B (2.49) BS01 AMP N/A GO:0000166 ... Q13UJ9 N/A
    27 10bm:B (2.49) BS02 MG N/A GO:0000166 ... Q13UJ9 N/A
    28 10bm:C (2.49) BS01 ADP N/A GO:0000166 ... Q13UJ9 N/A
    29 10bm:C (2.49) BS02 MG N/A GO:0000166 ... Q13UJ9 N/A
    30 10bm:D (2.49) BS01 AMP N/A GO:0000166 ... Q13UJ9 N/A
    31 10dc:A (2.08) BS01 GNP N/A N/A P01112 41654137
    32 10dc:A (2.08) BS02 MG N/A N/A P01112 41654137
    33 10dj:A (2.22) BS01 H8H N/A N/A N/A 41683573
    34 10dj:B (2.22) BS01 H8H N/A N/A N/A 41683573
    35 10fz:B (2.91) BS01 rna N/A N/A P0A7V0 N/A
    36 10fz:C (2.91) BS01 rna N/A N/A P0A7V3 N/A
    37 10fz:D (2.91) BS01 rna N/A N/A P0A7V8 N/A
    38 10fz:E (2.91) BS01 rna N/A N/A P0A7W1 N/A
    39 10fz:F (2.91) BS01 rna N/A N/A P02358 N/A
    40 10fz:G (2.91) BS01 rna N/A N/A P02359 N/A
    41 10fz:H (2.91) BS01 rna N/A N/A P0A7W7 N/A
    42 10fz:I (2.91) BS01 rna N/A N/A P0A7X3 N/A
    43 10fz:J (2.91) BS01 rna N/A N/A P0A7R5 N/A
    44 10fz:K (2.91) BS01 rna N/A N/A P0A7R9 N/A
    45 10fz:L (2.91) BS01 rna N/A N/A P0A7S3 N/A
    46 10fz:M (2.91) BS01 rna N/A N/A P0A7S9 N/A
    47 10fz:N (2.91) BS01 rna N/A N/A P0AG59 N/A
    48 10fz:O (2.91) BS01 rna N/A N/A C3SSQ8 N/A
    49 10fz:P (2.91) BS01 rna N/A N/A P0A7T3 N/A
    50 10fz:Q (2.91) BS01 rna N/A N/A P0AG63 N/A
    51 10fz:R (2.91) BS01 rna N/A N/A P0A7T7 N/A
    52 10fz:S (2.91) BS01 rna N/A N/A P0A7U3 N/A
    53 10fz:T (2.91) BS01 rna N/A N/A P0A7U7 N/A
    54 10gs:A (2.2) BS01 VWW 2.5.1.18 GO:0000122 ... P09211 9398518 MOAD: Ki=0.4uM
    BindingDB: Ki=420nM
    55 10gs:B (2.2) BS01 VWW 2.5.1.18 GO:0000122 ... P09211 9398518 MOAD: Ki=0.4uM
    BindingDB: Ki=420nM
    56 10gw:A (2.0) BS01 6PG N/A N/A G5EBD7 41765070
    57 10gw:A (2.0) BS02 6PG N/A N/A G5EBD7 41765070
    58 10gw:B (2.0) BS01 6PG N/A N/A G5EBD7 41765070
    59 10gw:B (2.0) BS02 6PG N/A N/A G5EBD7 41765070
    60 10gw:C (2.0) BS01 6PG N/A N/A G5EBD7 41765070
    61 10gw:C (2.0) BS02 6PG N/A N/A G5EBD7 41765070
    62 10gw:D (2.0) BS01 6PG N/A N/A G5EBD7 41765070
    63 10gw:D (2.0) BS02 6PG N/A N/A G5EBD7 41765070
    64 10ic:0 (4.7) BS01 CA N/A N/A P12476 41659395
    65 10ic:0 (4.7) BS02 CA N/A N/A P12476 41659395
    66 10ic:0 (4.7) BS03 CA N/A N/A P12476 41659395
    67 10ic:0 (4.7) BS04 CA N/A N/A P12476 41659395
    68 10ic:1 (4.7) BS01 CA N/A N/A P12476 41659395
    69 10ic:1 (4.7) BS02 CA N/A N/A P12476 41659395
    70 10ic:1 (4.7) BS03 CA N/A N/A P12476 41659395
    71 10ic:1 (4.7) BS04 CA N/A N/A P12476 41659395
    72 10ic:P (4.7) BS01 CA N/A N/A P12476 41659395
    73 10ic:P (4.7) BS02 CA N/A N/A P12476 41659395
    74 10ic:P (4.7) BS03 CA N/A N/A P12476 41659395
    75 10ic:P (4.7) BS04 CA N/A N/A P12476 41659395
    76 10ic:Q (4.7) BS01 CA N/A N/A P12476 41659395
    77 10ic:Q (4.7) BS02 CA N/A N/A P12476 41659395
    78 10ic:Q (4.7) BS03 CA N/A N/A P12476 41659395
    79 10ic:Q (4.7) BS04 CA N/A N/A P12476 41659395
    80 10ic:R (4.7) BS01 CA N/A N/A P12476 41659395
    81 10ic:R (4.7) BS02 CA N/A N/A P12476 41659395
    82 10ic:R (4.7) BS03 CA N/A N/A P12476 41659395
    83 10ic:R (4.7) BS04 CA N/A N/A P12476 41659395
    84 10ic:S (4.7) BS01 CA N/A N/A P12476 41659395
    85 10ic:S (4.7) BS02 CA N/A N/A P12476 41659395
    86 10ic:S (4.7) BS03 CA N/A N/A P12476 41659395
    87 10ic:S (4.7) BS04 CA N/A N/A P12476 41659395
    88 10ic:T (4.7) BS01 CA N/A N/A P12476 41659395
    89 10ic:T (4.7) BS02 CA N/A N/A P12476 41659395
    90 10ic:T (4.7) BS03 CA N/A N/A P12476 41659395
    91 10ic:T (4.7) BS04 CA N/A N/A P12476 41659395
    92 10ic:U (4.7) BS01 CA N/A N/A P12476 41659395
    93 10ic:U (4.7) BS02 CA N/A N/A P12476 41659395
    94 10ic:U (4.7) BS03 CA N/A N/A P12476 41659395
    95 10ic:U (4.7) BS04 CA N/A N/A P12476 41659395
    96 10ic:V (4.7) BS01 CA N/A N/A P12476 41659395
    97 10ic:V (4.7) BS02 CA N/A N/A P12476 41659395
    98 10ic:V (4.7) BS03 CA N/A N/A P12476 41659395
    99 10ic:V (4.7) BS04 CA N/A N/A P12476 41659395
    100 10ic:W (4.7) BS01 CA N/A N/A P12476 41659395
    101 10ic:W (4.7) BS02 CA N/A N/A P12476 41659395
    102 10ic:W (4.7) BS03 CA N/A N/A P12476 41659395
    103 10ic:W (4.7) BS04 CA N/A N/A P12476 41659395
    104 10ic:X (4.7) BS01 CA N/A N/A P12476 41659395
    105 10ic:X (4.7) BS02 CA N/A N/A P12476 41659395
    106 10ic:X (4.7) BS03 CA N/A N/A P12476 41659395
    107 10ic:X (4.7) BS04 CA N/A N/A P12476 41659395
    108 10ic:Y (4.7) BS01 CA N/A N/A P12476 41659395
    109 10ic:Y (4.7) BS02 CA N/A N/A P12476 41659395
    110 10ic:Y (4.7) BS03 CA N/A N/A P12476 41659395
    111 10ic:Y (4.7) BS04 CA N/A N/A P12476 41659395
    112 10ic:Z (4.7) BS01 CA N/A N/A P12476 41659395
    113 10ic:Z (4.7) BS02 CA N/A N/A P12476 41659395
    114 10ic:Z (4.7) BS03 CA N/A N/A P12476 41659395
    115 10ic:Z (4.7) BS04 CA N/A N/A P12476 41659395
    116 10jt:A (1.489) BS01 GDP N/A N/A P01116 41769786
    117 10jt:A (1.489) BS02 A1C5K N/A N/A P01116 41769786
    118 10jt:B (1.489) BS01 GDP N/A N/A P01116 41769786
    119 10jt:B (1.489) BS02 A1C5K N/A N/A P01116 41769786
    120 10ju:B (2.15) BS01 ANP N/A N/A Q582V7 N/A
    121 10jx:A (1.47) BS01 HEM N/A N/A N/A N/A
    122 10jx:B (1.47) BS01 HEM N/A N/A N/A N/A
    123 10jx:B (1.47) BS02 POL N/A N/A N/A N/A
    124 10jx:B (1.47) BS03 POL N/A N/A N/A N/A
    125 10jy:A (1.65) BS01 HEM N/A N/A N/A N/A
    126 10jy:A (1.65) BS02 POL N/A N/A N/A N/A
    127 10jy:B (1.65) BS01 HEM N/A N/A N/A N/A
    128 10ke:A (1.7) BS01 NAD N/A N/A Q7TTK0 N/A
    129 10ke:A (1.7) BS02 UD2 N/A N/A Q7TTK0 N/A
    130 10ke:B (1.7) BS01 NAD N/A N/A Q7TTK0 N/A
    131 10ke:B (1.7) BS02 UD2 N/A N/A Q7TTK0 N/A
    132 10ke:C (1.7) BS01 NAD N/A N/A Q7TTK0 N/A
    133 10ke:C (1.7) BS02 UD2 N/A N/A Q7TTK0 N/A
    134 10ke:D (1.7) BS01 NAD N/A N/A Q7TTK0 N/A
    135 10ke:D (1.7) BS02 UD2 N/A N/A Q7TTK0 N/A
    136 10kz:A (1.78) BS01 A1C6O N/A N/A P03952 N/A
    137 10le:A (2.4) BS01 MN N/A N/A N/A N/A
    138 10le:B (2.4) BS01 MN N/A N/A N/A N/A
    139 10lg:A (1.87) BS01 peptide N/A N/A Q5M4D0 N/A
    140 10li:A (1.67) BS01 AG2 N/A GO:0008836 ... A0A0D6FAR3 N/A
    141 10lr:A (1.583) BS01 A1C6Q N/A N/A P03952 N/A
    142 10mh:A (2.55) BS01 dna 2.1.1.37 GO:0003886 ... P05102 9925782
    143 10mh:A (2.55) BS02 dna 2.1.1.37 GO:0003886 ... P05102 9925782
    144 10mh:A (2.55) BS03 SAH 2.1.1.37 GO:0003886 ... P05102 9925782
    145 10mw:A (1.62) BS01 A1C6Z N/A N/A P03952 N/A
    146 10nh:A (2.65) BS01 ZN N/A N/A S6B9Y3 N/A
    147 10nh:A (2.65) BS02 ZN N/A N/A S6B9Y3 N/A
    148 10nh:A (2.65) BS03 ZN N/A N/A S6B9Y3 N/A
    149 10nh:B (2.65) BS01 ZN N/A N/A S6B9Y3 N/A
    150 10nh:B (2.65) BS02 ZN N/A N/A S6B9Y3 N/A
    151 10nh:B (2.65) BS03 ZN N/A N/A S6B9Y3 N/A
    152 10nh:C (2.65) BS01 ZN N/A N/A S6B9Y3 N/A
    153 10nh:C (2.65) BS02 ZN N/A N/A S6B9Y3 N/A
    154 10nh:C (2.65) BS03 ZN N/A N/A S6B9Y3 N/A
    155 10nh:D (2.65) BS01 ZN N/A N/A S6B9Y3 N/A
    156 10nh:D (2.65) BS02 ZN N/A N/A S6B9Y3 N/A
    157 10nh:D (2.65) BS03 ZN N/A N/A S6B9Y3 N/A
    158 10nh:E (2.65) BS01 ZN N/A N/A S6B9Y3 N/A
    159 10nh:E (2.65) BS02 ZN N/A N/A S6B9Y3 N/A
    160 10nh:E (2.65) BS03 ZN N/A N/A S6B9Y3 N/A
    161 10nh:F (2.65) BS01 ZN N/A N/A S6B9Y3 N/A
    162 10nh:F (2.65) BS02 ZN N/A N/A S6B9Y3 N/A
    163 10nh:F (2.65) BS03 ZN N/A N/A S6B9Y3 N/A
    164 10pa:A (1.92) BS01 CA N/A N/A Q99W47 N/A
    165 10pa:A (1.92) BS02 CA N/A N/A Q99W47 N/A
    166 10pa:A (1.92) BS03 CA N/A N/A Q99W47 N/A
    167 10pa:A (1.92) BS04 CA N/A N/A Q99W47 N/A
    168 10pa:A (1.92) BS05 CA N/A N/A Q99W47 N/A
    169 10ps:A (2.0) BS01 CA N/A N/A Q99W47 N/A
    170 10ps:A (2.0) BS02 CA N/A N/A Q99W47 N/A
    171 10ps:A (2.0) BS03 CA N/A N/A Q99W47 N/A
    172 10ps:A (2.0) BS04 CA N/A N/A Q99W47 N/A
    173 10ps:A (2.0) BS05 CA N/A N/A Q99W47 N/A
    174 10ps:A (2.0) BS06 CA N/A N/A Q99W47 N/A
    175 10ps:A (2.0) BS07 CA N/A N/A Q99W47 N/A
    176 10ps:A (2.0) BS08 CA N/A N/A Q99W47 N/A
    177 10ps:A (2.0) BS09 CA N/A N/A Q99W47 N/A
    178 10pw:A (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    179 10pw:B (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    180 10pw:B (2.2) BS02 GSH N/A GO:0004364 ... Q49SB0 N/A
    181 10pw:C (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    182 10pw:D (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    183 10pw:E (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    184 10pw:F (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    185 10pw:F (2.2) BS02 GSH N/A GO:0004364 ... Q49SB0 N/A
    186 10pw:G (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    187 10pw:H (2.2) BS01 GSH N/A GO:0004364 ... Q49SB0 N/A
    188 10px:10 (2.45) BS01 rna N/A N/A P60493 N/A
    189 10px:10 (2.45) BS02 rna N/A N/A P60493 N/A
    190 10px:10 (2.45) BS03 rna N/A N/A P60493 N/A
    191 10px:10 (2.45) BS04 MG N/A N/A P60493 N/A
    192 10px:11 (2.45) BS01 rna N/A N/A P60494 N/A
    193 10px:11 (2.45) BS02 rna N/A N/A P60494 N/A
    194 10px:11 (2.45) BS03 MG N/A N/A P60494 N/A
    195 10px:12 (2.45) BS01 rna N/A N/A Q5SHP6 N/A
    196 10px:12 (2.45) BS02 MG N/A N/A Q5SHP6 N/A
    197 10px:12 (2.45) BS03 MG N/A N/A Q5SHP6 N/A
    198 10px:13 (2.45) BS01 rna N/A N/A Q5SHQ6 N/A
    199 10px:13 (2.45) BS02 rna N/A N/A Q5SHQ6 N/A
    200 10px:13 (2.45) BS03 MG N/A N/A Q5SHQ6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).