SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    200401 3wvp:B (2.3) BS05 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200402 3wvp:B (2.3) BS06 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200403 3wvp:B (2.3) BS07 MN 3.1.21.4 GO:0009036 ... P43870 25664735
    200404 3wvp:C (2.3) BS01 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200405 3wvp:C (2.3) BS02 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200406 3wvp:C (2.3) BS03 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200407 3wvp:C (2.3) BS04 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200408 3wvp:C (2.3) BS05 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200409 3wvp:C (2.3) BS06 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200410 3wvp:C (2.3) BS07 MN 3.1.21.4 GO:0009036 ... P43870 25664735
    200411 3wvp:D (2.3) BS01 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200412 3wvp:D (2.3) BS02 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200413 3wvp:D (2.3) BS03 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200414 3wvp:D (2.3) BS04 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200415 3wvp:D (2.3) BS05 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200416 3wvp:D (2.3) BS06 dna 3.1.21.4 GO:0009036 ... P43870 25664735
    200417 3wvp:D (2.3) BS07 MN 3.1.21.4 GO:0009036 ... P43870 25664735
    200418 3wvr:B (2.175) BS01 AMP ? GO:0000166 ... A0A0A6YVN3 25402768
    200419 3wvr:C (2.175) BS01 AMP ? GO:0000166 ... A0A0A6YVN3 25402768
    200420 3wvr:D (2.175) BS01 AMP ? GO:0000166 ... A0A0A6YVN3 25402768
    200421 3wvs:A (1.4) BS01 HEM ? GO:0004497 ... G1UDU7 25258320
    200422 3wvs:A (1.4) BS02 RRM ? GO:0004497 ... G1UDU7 25258320
    200423 3wvu:A (1.92) BS01 RU ? GO:0005506 ... P02791 25352251
    200424 3wvu:A (1.92) BS02 RU ? GO:0005506 ... P02791 25352251
    200425 3wvv:A (1.82) BS01 RU ? GO:0005506 ... P02791 25352251
    200426 3wvv:A (1.82) BS02 RU ? GO:0005506 ... P02791 25352251
    200427 3wvw:A (2.0) BS01 RU ? GO:0005506 ... P02791 25352251
    200428 3wvw:A (2.0) BS02 RU1 ? GO:0005506 ... P02791 25352251
    200429 3ww1:A (1.95) BS01 MN ? N/A L0N3Y0 25661811
    200430 3ww1:A (1.95) BS02 0MK ? N/A L0N3Y0 25661811
    200431 3ww1:A (1.95) BS03 0MK ? N/A L0N3Y0 25661811
    200432 3ww1:B (1.95) BS01 MN ? N/A L0N3Y0 25661811
    200433 3ww1:B (1.95) BS02 ROR ? N/A L0N3Y0 25661811
    200434 3ww1:B (1.95) BS03 0MK ? N/A L0N3Y0 25661811
    200435 3ww2:A (2.0) BS01 MN ? N/A L0N3Y0 25661811
    200436 3ww2:A (2.0) BS02 SF6 ? N/A L0N3Y0 25661811
    200437 3ww2:B (2.0) BS01 MN ? N/A L0N3Y0 25661811
    200438 3ww2:B (2.0) BS02 LPK ? N/A L0N3Y0 25661811
    200439 3ww2:B (2.0) BS03 SF9 ? N/A L0N3Y0 25661811
    200440 3ww3:A (1.9) BS01 MN ? N/A L0N3Y0 25661811
    200441 3ww3:B (1.9) BS01 MN ? N/A L0N3Y0 25661811
    200442 3ww4:A (1.95) BS01 MN ? N/A L0N3Y0 25661811
    200443 3ww4:A (1.95) BS02 3BU ? N/A L0N3Y0 25661811
    200444 3ww4:A (1.95) BS03 WOO ? N/A L0N3Y0 25661811
    200445 3ww4:B (1.95) BS01 MN ? N/A L0N3Y0 25661811
    200446 3ww4:B (1.95) BS02 3BU ? N/A L0N3Y0 25661811
    200447 3ww4:B (1.95) BS03 WOO ? N/A L0N3Y0 25661811
    200448 3wwc:A (1.49) BS01 BUA 3.7.1.7 GO:0047699 ... Q9LCQ7 25173935
    200449 3wwc:A (1.49) BS02 BUA 3.7.1.7 GO:0047699 ... Q9LCQ7 25173935
    200450 3wwg:B (2.2) BS01 BGC 3.2.1.57 GO:0003824 ... O00105 25359784
    200451 3wwg:B (2.2) BS02 GLC 3.2.1.57 GO:0003824 ... O00105 25359784
    200452 3wwg:C (2.2) BS01 GLC 3.2.1.57 GO:0003824 ... O00105 25359784
    200453 3wwg:C (2.2) BS02 GLC 3.2.1.57 GO:0003824 ... O00105 25359784
    200454 3wwh:A (1.65) BS01 PLP 2.6.1.18 GO:0003824 ... F7J696 26030619
    200455 3wwi:A (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200456 3wwi:B (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200457 3wwi:C (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200458 3wwi:D (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200459 3wwi:E (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200460 3wwi:F (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200461 3wwi:G (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200462 3wwi:H (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200463 3wwi:I (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200464 3wwi:J (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200465 3wwi:K (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200466 3wwi:L (2.27) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200467 3wwj:A (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200468 3wwj:B (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200469 3wwj:C (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200470 3wwj:D (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200471 3wwj:E (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200472 3wwj:F (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200473 3wwj:G (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200474 3wwj:H (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200475 3wwj:I (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200476 3wwj:J (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200477 3wwj:K (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200478 3wwj:L (2.2) BS01 PLP 2.1.6.18 GO:0003824 ... F7J696 26030619
    200479 3wwl:A (1.2) BS01 ZN ? GO:0019878 ... Q5SH22 25392000
    200480 3wwm:A (2.8) BS01 ADP 2.7.2.17 GO:0003991 ... O50147 25392000
    200481 3wwn:B (1.85) BS01 ZN ? N/A Q9ZND7 25392000
    200482 3wwo:A (2.55) BS01 CA ? N/A D1MX73 25220808
    200483 3wwo:B (2.55) BS01 CA ? N/A D1MX73 25220808
    200484 3wwq:C (1.9) BS01 ZN ? GO:0043130 ... Q6NZ36 25799058
    200485 3wwq:F (1.9) BS01 ZN ? GO:0043130 ... Q6NZ36 25799058
    200486 3wwq:I (1.9) BS01 ZN ? GO:0043130 ... Q6NZ36 25799058
    200487 3wwq:L (1.9) BS01 ZN ? GO:0043130 ... Q6NZ36 25799058
    200488 3wwr:A (3.18) BS01 3AJ ? GO:0003677 ... P11473 25500068
    200489 3wwt:B (2.0) BS01 CA ? GO:0052031 ... P04862 26339056
    200490 3wwx:A (1.49) BS01 DIA ? N/A E2RVJ1 26513520
    200491 3wx1:A (1.93) BS01 ZN ? N/A Q8C7D2 25108355
    200492 3wx1:B (1.93) BS01 ZN ? N/A Q8C7D2 25108355
    200493 3wx2:A (2.0) BS01 ZN ? N/A Q8C7D2 25108355
    200494 3wx2:B (2.0) BS01 ZN ? N/A Q8C7D2 25108355
    200495 3wx7:A (1.349) BS01 CA ? GO:0004553 ... A6P4T5 25479092
    200496 3wx7:A (1.349) BS02 ZN ? GO:0004553 ... A6P4T5 25479092
    200497 3wx7:B (1.349) BS01 CA ? GO:0004553 ... A6P4T5 25479092
    200498 3wx7:B (1.349) BS02 ZN ? GO:0004553 ... A6P4T5 25479092
    200499 3wx9:A (1.58) BS01 PMP ? GO:0008483 ... O57946 N/A
    200500 3wx9:A (1.58) BS02 AKG ? GO:0008483 ... O57946 N/A
    200501 3wx9:A (1.58) BS03 G9A ? GO:0008483 ... O57946 N/A
    200502 3wx9:A (1.58) BS04 3EE ? GO:0008483 ... O57946 N/A
    200503 3wx9:A (1.58) BS05 GLU ? GO:0008483 ... O57946 N/A
    200504 3wx9:C (1.58) BS01 PMP ? GO:0008483 ... O57946 N/A
    200505 3wx9:C (1.58) BS02 AKG ? GO:0008483 ... O57946 N/A
    200506 3wx9:C (1.58) BS03 G9A ? GO:0008483 ... O57946 N/A
    200507 3wx9:C (1.58) BS04 3EE ? GO:0008483 ... O57946 N/A
    200508 3wx9:C (1.58) BS05 KYA ? GO:0008483 ... O57946 N/A
    200509 3wxa:A (2.36) BS01 peptide ? GO:0000287 ... O75340 25667979
    200510 3wxa:A (2.36) BS02 ZN ? GO:0000287 ... O75340 25667979
    200511 3wxa:A (2.36) BS03 ZN ? GO:0000287 ... O75340 25667979
    200512 3wxa:A (2.36) BS04 ZN ? GO:0000287 ... O75340 25667979
    200513 3wxa:A (2.36) BS05 ZN ? GO:0000287 ... O75340 25667979
    200514 3wxa:B (2.36) BS01 peptide ? GO:0000287 ... O75340 25667979
    200515 3wxa:B (2.36) BS02 ZN ? GO:0000287 ... O75340 25667979
    200516 3wxa:B (2.36) BS03 ZN ? GO:0000287 ... O75340 25667979
    200517 3wxa:B (2.36) BS04 ZN ? GO:0000287 ... O75340 25667979
    200518 3wxa:B (2.36) BS05 ZN ? GO:0000287 ... O75340 25667979
    200519 3wxb:A (1.98) BS01 NDP 1.1.1.184 N/A F1N9C1 26206323
    200520 3wxb:A (1.98) BS02 EDO 1.1.1.184 N/A F1N9C1 26206323
    200521 3wxb:B (1.98) BS01 NDP 1.1.1.184 N/A F1N9C1 26206323
    200522 3wxc:A (2.1) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 25246278
    200523 3wxc:A (2.1) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 25246278
    200524 3wxc:A (2.1) BS03 C93 3.5.2.6 GO:0008270 ... Q79MP6 25246278
    200525 3wxc:B (2.1) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 25246278
    200526 3wxc:B (2.1) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 25246278
    200527 3wxc:B (2.1) BS03 C93 3.5.2.6 GO:0008270 ... Q79MP6 25246278
    200528 3wxj:A (2.7) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200529 3wxj:B (2.7) BS01 G3P 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200530 3wxj:C (2.7) BS01 G3P 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200531 3wxj:D (2.7) BS01 G3P 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200532 3wxk:A (2.37) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200533 3wxk:B (2.37) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200534 3wxk:C (2.37) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200535 3wxk:D (2.37) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200536 3wxl:A (1.9) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200537 3wxl:A (1.9) BS02 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200538 3wxl:B (1.9) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200539 3wxl:B (1.9) BS02 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200540 3wxl:B (1.9) BS03 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200541 3wxl:C (1.9) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200542 3wxl:D (1.9) BS01 GOL 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200543 3wxl:D (1.9) BS02 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200544 3wxl:D (1.9) BS03 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    200545 3wxm:A (2.3) BS01 GTP ? GO:0000287 ... Q9YAV0 20876129
    200546 3wxm:A (2.3) BS02 MG ? GO:0000287 ... Q9YAV0 20876129
    200547 3wxm:C (2.3) BS01 GTP ? GO:0000287 ... Q9YAV0 20876129
    200548 3wxm:C (2.3) BS02 MG ? GO:0000287 ... Q9YAV0 20876129
    200549 3wxm:E (2.3) BS01 GTP ? GO:0000287 ... Q9YAV0 20876129
    200550 3wxm:E (2.3) BS02 MG ? GO:0000287 ... Q9YAV0 20876129
    200551 3wxm:G (2.3) BS01 GTP ? GO:0000287 ... Q9YAV0 20876129
    200552 3wxm:G (2.3) BS02 MG ? GO:0000287 ... Q9YAV0 20876129
    200553 3wxo:A (2.12) BS01 HEM 1.11.1.21 GO:0004096 ... Q31MN3 25303560
    200554 3wxo:A (2.12) BS02 NIZ 1.11.1.21 GO:0004096 ... Q31MN3 25303560
    200555 3wxo:A (2.12) BS03 NIZ 1.11.1.21 GO:0004096 ... Q31MN3 25303560
    200556 3wxo:A (2.12) BS04 NIZ 1.11.1.21 GO:0004096 ... Q31MN3 25303560
    200557 3wxp:A (1.42) BS01 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200558 3wxp:A (1.42) BS02 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200559 3wxp:A (1.42) BS03 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200560 3wxp:A (1.42) BS04 CA 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200561 3wxp:A (1.42) BS05 CA 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200562 3wxx:G (2.7) BS01 MG ? GO:0005515 ... Q6TLM1 26439768
    200563 3wxy:A (1.706) BS01 COA 2.3.1.- GO:0009058 ... Q2U852 25564614
    200564 3wxy:B (1.706) BS01 COA 2.3.1.- GO:0009058 ... Q2U852 25564614
    200565 3wy0:A (2.001) BS01 COA 2.3.1.- GO:0009058 ... Q2U852 25564614
    200566 3wy0:B (2.001) BS01 COA 2.3.1.- GO:0009058 ... Q2U852 25564614
    200567 3wy1:A (2.15) BS01 MG 3.2.1.20 GO:0004556 ... H3K096 26057678
    200568 3wy1:A (2.15) BS02 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200569 3wy1:A (2.15) BS03 PRU 3.2.1.20 GO:0004556 ... H3K096 26057678
    200570 3wy1:B (2.15) BS01 MG 3.2.1.20 GO:0004556 ... H3K096 26057678
    200571 3wy1:B (2.15) BS02 PRU 3.2.1.20 GO:0004556 ... H3K096 26057678
    200572 3wy2:A (1.471) BS01 MG 3.2.1.20 GO:0004556 ... H3K096 26057678
    200573 3wy2:A (1.471) BS02 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200574 3wy2:A (1.471) BS03 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200575 3wy2:A (1.471) BS04 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200576 3wy2:A (1.471) BS05 BGC 3.2.1.20 GO:0004556 ... H3K096 26057678
    200577 3wy2:B (1.471) BS01 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200578 3wy2:B (1.471) BS02 MG 3.2.1.20 GO:0004556 ... H3K096 26057678
    200579 3wy2:B (1.471) BS03 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200580 3wy3:A (3.0) BS01 MG 3.2.1.20 GO:0004556 ... H3K096 26057678
    200581 3wy3:A (3.0) BS02 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200582 3wy3:A (3.0) BS03 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200583 3wy3:A (3.0) BS04 BGC 3.2.1.20 GO:0004556 ... H3K096 26057678
    200584 3wy3:B (3.0) BS01 MG 3.2.1.20 GO:0004556 ... H3K096 26057678
    200585 3wy3:B (3.0) BS02 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200586 3wy3:B (3.0) BS03 BGC 3.2.1.20 GO:0004556 ... H3K096 26057678
    200587 3wy4:A (2.5) BS01 GLC 3.2.1.20 GO:0004556 ... H3K096 26057678
    200588 3wy4:A (2.5) BS02 GLC 3.2.1.20 GO:0004556 ... H3K096 26057678
    200589 3wy4:A (2.5) BS03 MG 3.2.1.20 GO:0004556 ... H3K096 26057678
    200590 3wy4:A (2.5) BS04 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200591 3wy4:A (2.5) BS05 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200592 3wy4:A (2.5) BS06 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200593 3wy4:B (2.5) BS01 GOL 3.2.1.20 GO:0004556 ... H3K096 26057678
    200594 3wy6:A (1.45) BS01 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200595 3wy6:A (1.45) BS02 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200596 3wy6:A (1.45) BS03 CA 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200597 3wy6:A (1.45) BS04 CA 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200598 3wy6:A (1.45) BS05 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    200599 3wy9:A (2.3) BS01 peptide ? GO:0000287 ... O59153 25428348
    200600 3wy9:A (2.3) BS02 peptide ? GO:0000287 ... O59153 25428348

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).