SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201401 3zdv:B (1.41) BS02 CA ? GO:0030246 ... Q9HYN5 23719508
    201402 3zdv:B (1.41) BS03 MMA ? GO:0030246 ... Q9HYN5 23719508
    201403 3zdv:B (1.41) BS04 F1A ? GO:0030246 ... Q9HYN5 23719508
    201404 3zdv:C (1.41) BS01 CA ? GO:0030246 ... Q9HYN5 23719508
    201405 3zdv:C (1.41) BS02 CA ? GO:0030246 ... Q9HYN5 23719508
    201406 3zdv:C (1.41) BS03 MMA ? GO:0030246 ... Q9HYN5 23719508
    201407 3zdv:C (1.41) BS04 F1A ? GO:0030246 ... Q9HYN5 23719508
    201408 3zdv:D (1.41) BS01 CA ? GO:0030246 ... Q9HYN5 23719508
    201409 3zdv:D (1.41) BS02 CA ? GO:0030246 ... Q9HYN5 23719508
    201410 3zdv:D (1.41) BS03 MMA ? GO:0030246 ... Q9HYN5 23719508
    201411 3zdw:A (2.4) BS01 CU1 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 14764581
    201412 3zdw:A (2.4) BS02 CU1 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 14764581
    201413 3zdw:A (2.4) BS03 CU1 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 14764581
    201414 3zdw:A (2.4) BS04 CU1 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 14764581
    201415 3zdw:A (2.4) BS05 OXY 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 14764581
    201416 3zdw:A (2.4) BS06 EBS 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 14764581
    201417 3zdx:A (2.45) BS01 CA ? GO:0007155 ... P08514 23798730
    201418 3zdx:A (2.45) BS02 CA ? GO:0007155 ... P08514 23798730
    201419 3zdx:A (2.45) BS03 CA ? GO:0007155 ... P08514 23798730
    201420 3zdx:A (2.45) BS04 CA ? GO:0007155 ... P08514 23798730
    201421 3zdx:B (2.45) BS01 MN ? N/A P05106 23798730
    201422 3zdx:B (2.45) BS02 MN ? N/A P05106 23798730
    201423 3zdx:B (2.45) BS03 MN ? N/A P05106 23798730
    201424 3zdx:C (2.45) BS01 CA ? GO:0007155 ... P08514 23798730
    201425 3zdx:C (2.45) BS02 CA ? GO:0007155 ... P08514 23798730
    201426 3zdx:C (2.45) BS03 CA ? GO:0007155 ... P08514 23798730
    201427 3zdx:C (2.45) BS04 CA ? GO:0007155 ... P08514 23798730
    201428 3zdx:D (2.45) BS01 MN ? N/A P05106 23798730
    201429 3zdx:D (2.45) BS02 MN ? N/A P05106 23798730
    201430 3zdx:D (2.45) BS03 MN ? N/A P05106 23798730
    201431 3zdy:A (2.45) BS01 peptide ? GO:0007155 ... P08514 23798730
    201432 3zdy:A (2.45) BS02 CA ? GO:0007155 ... P08514 23798730
    201433 3zdy:A (2.45) BS03 CA ? GO:0007155 ... P08514 23798730
    201434 3zdy:A (2.45) BS04 CA ? GO:0007155 ... P08514 23798730
    201435 3zdy:A (2.45) BS05 CA ? GO:0007155 ... P08514 23798730
    201436 3zdy:B (2.45) BS01 peptide ? N/A P05106 23798730
    201437 3zdy:B (2.45) BS02 MG ? N/A P05106 23798730
    201438 3zdy:B (2.45) BS03 CA ? N/A P05106 23798730
    201439 3zdy:B (2.45) BS04 CA ? N/A P05106 23798730
    201440 3zdy:C (2.45) BS01 peptide ? GO:0007155 ... P08514 23798730
    201441 3zdy:C (2.45) BS02 CA ? GO:0007155 ... P08514 23798730
    201442 3zdy:C (2.45) BS03 CA ? GO:0007155 ... P08514 23798730
    201443 3zdy:C (2.45) BS04 CA ? GO:0007155 ... P08514 23798730
    201444 3zdy:C (2.45) BS05 CA ? GO:0007155 ... P08514 23798730
    201445 3zdy:D (2.45) BS01 peptide ? N/A P05106 23798730
    201446 3zdy:D (2.45) BS02 MG ? N/A P05106 23798730
    201447 3zdy:D (2.45) BS03 CA ? N/A P05106 23798730
    201448 3zdy:D (2.45) BS04 CA ? N/A P05106 23798730
    201449 3zdz:A (2.75) BS01 peptide ? GO:0007155 ... P08514 23798730
    201450 3zdz:A (2.75) BS02 CA ? GO:0007155 ... P08514 23798730
    201451 3zdz:A (2.75) BS03 CA ? GO:0007155 ... P08514 23798730
    201452 3zdz:A (2.75) BS04 CA ? GO:0007155 ... P08514 23798730
    201453 3zdz:A (2.75) BS05 CA ? GO:0007155 ... P08514 23798730
    201454 3zdz:B (2.75) BS01 peptide ? N/A P05106 23798730
    201455 3zdz:B (2.75) BS02 MN ? N/A P05106 23798730
    201456 3zdz:B (2.75) BS03 MN ? N/A P05106 23798730
    201457 3zdz:B (2.75) BS04 MN ? N/A P05106 23798730
    201458 3zdz:C (2.75) BS01 peptide ? GO:0007155 ... P08514 23798730
    201459 3zdz:C (2.75) BS02 CA ? GO:0007155 ... P08514 23798730
    201460 3zdz:C (2.75) BS03 CA ? GO:0007155 ... P08514 23798730
    201461 3zdz:C (2.75) BS04 CA ? GO:0007155 ... P08514 23798730
    201462 3zdz:C (2.75) BS05 CA ? GO:0007155 ... P08514 23798730
    201463 3zdz:D (2.75) BS01 peptide ? N/A P05106 23798730
    201464 3zdz:D (2.75) BS02 MN ? N/A P05106 23798730
    201465 3zdz:D (2.75) BS03 MN ? N/A P05106 23798730
    201466 3zdz:D (2.75) BS04 MN ? N/A P05106 23798730
    201467 3ze0:A (2.95) BS01 peptide ? GO:0007155 ... P08514 23798730
    201468 3ze0:A (2.95) BS02 CA ? GO:0007155 ... P08514 23798730
    201469 3ze0:A (2.95) BS03 CA ? GO:0007155 ... P08514 23798730
    201470 3ze0:A (2.95) BS04 CA ? GO:0007155 ... P08514 23798730
    201471 3ze0:A (2.95) BS05 CA ? GO:0007155 ... P08514 23798730
    201472 3ze0:B (2.95) BS01 peptide ? N/A P05106 23798730
    201473 3ze0:B (2.95) BS02 MN ? N/A P05106 23798730
    201474 3ze0:B (2.95) BS03 MN ? N/A P05106 23798730
    201475 3ze0:B (2.95) BS04 MN ? N/A P05106 23798730
    201476 3ze0:C (2.95) BS01 peptide ? GO:0007155 ... P08514 23798730
    201477 3ze0:C (2.95) BS02 CA ? GO:0007155 ... P08514 23798730
    201478 3ze0:C (2.95) BS03 CA ? GO:0007155 ... P08514 23798730
    201479 3ze0:C (2.95) BS04 CA ? GO:0007155 ... P08514 23798730
    201480 3ze0:C (2.95) BS05 CA ? GO:0007155 ... P08514 23798730
    201481 3ze0:D (2.95) BS01 peptide ? N/A P05106 23798730
    201482 3ze0:D (2.95) BS02 MN ? N/A P05106 23798730
    201483 3ze0:D (2.95) BS03 MN ? N/A P05106 23798730
    201484 3ze0:D (2.95) BS04 MN ? N/A P05106 23798730
    201485 3ze1:A (3.0) BS01 peptide ? GO:0007155 ... P08514 23798730
    201486 3ze1:A (3.0) BS02 CA ? GO:0007155 ... P08514 23798730
    201487 3ze1:A (3.0) BS03 CA ? GO:0007155 ... P08514 23798730
    201488 3ze1:A (3.0) BS04 CA ? GO:0007155 ... P08514 23798730
    201489 3ze1:A (3.0) BS05 CA ? GO:0007155 ... P08514 23798730
    201490 3ze1:B (3.0) BS01 peptide ? N/A P05106 23798730
    201491 3ze1:B (3.0) BS02 MN ? N/A P05106 23798730
    201492 3ze1:B (3.0) BS03 MN ? N/A P05106 23798730
    201493 3ze1:B (3.0) BS04 MN ? N/A P05106 23798730
    201494 3ze1:C (3.0) BS01 peptide ? GO:0007155 ... P08514 23798730
    201495 3ze1:C (3.0) BS02 CA ? GO:0007155 ... P08514 23798730
    201496 3ze1:C (3.0) BS03 CA ? GO:0007155 ... P08514 23798730
    201497 3ze1:C (3.0) BS04 CA ? GO:0007155 ... P08514 23798730
    201498 3ze1:C (3.0) BS05 CA ? GO:0007155 ... P08514 23798730
    201499 3ze1:D (3.0) BS01 peptide ? N/A P05106 23798730
    201500 3ze1:D (3.0) BS02 MN ? N/A P05106 23798730
    201501 3ze1:D (3.0) BS03 MN ? N/A P05106 23798730
    201502 3ze1:D (3.0) BS04 MN ? N/A P05106 23798730
    201503 3ze2:A (2.35) BS01 peptide ? GO:0007155 ... P08514 23798730
    201504 3ze2:A (2.35) BS02 CA ? GO:0007155 ... P08514 23798730
    201505 3ze2:A (2.35) BS03 CA ? GO:0007155 ... P08514 23798730
    201506 3ze2:A (2.35) BS04 CA ? GO:0007155 ... P08514 23798730
    201507 3ze2:A (2.35) BS05 CA ? GO:0007155 ... P08514 23798730
    201508 3ze2:B (2.35) BS01 peptide ? N/A P05106 23798730
    201509 3ze2:B (2.35) BS02 MN ? N/A P05106 23798730
    201510 3ze2:B (2.35) BS03 MN ? N/A P05106 23798730
    201511 3ze2:B (2.35) BS04 MN ? N/A P05106 23798730
    201512 3ze2:C (2.35) BS01 peptide ? GO:0007155 ... P08514 23798730
    201513 3ze2:C (2.35) BS02 CA ? GO:0007155 ... P08514 23798730
    201514 3ze2:C (2.35) BS03 CA ? GO:0007155 ... P08514 23798730
    201515 3ze2:C (2.35) BS04 CA ? GO:0007155 ... P08514 23798730
    201516 3ze2:C (2.35) BS05 CA ? GO:0007155 ... P08514 23798730
    201517 3ze2:D (2.35) BS01 peptide ? N/A P05106 23798730
    201518 3ze2:D (2.35) BS02 MN ? N/A P05106 23798730
    201519 3ze2:D (2.35) BS03 MN ? N/A P05106 23798730
    201520 3ze2:D (2.35) BS04 MN ? N/A P05106 23798730
    201521 3ze3:A (2.05) BS01 78N 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201522 3ze3:A (2.05) BS02 78N 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201523 3ze3:A (2.05) BS03 78N 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201524 3ze3:B (2.05) BS01 78N 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201525 3ze3:B (2.05) BS02 78N 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201526 3ze3:C (2.05) BS01 78N 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201527 3ze3:C (2.05) BS02 78N 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201528 3ze3:D (2.05) BS01 ZN 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201529 3ze3:D (2.05) BS02 78M 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201530 3ze3:D (2.05) BS03 78M 2.7.1.107 GO:0001727 ... P0ABN1 23676677
    201531 3ze6:A (1.5) BS01 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201532 3ze6:A (1.5) BS02 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201533 3ze6:A (1.5) BS03 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201534 3ze6:A (1.5) BS04 FSX 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201535 3ze6:A (1.5) BS05 SBY 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201536 3ze6:A (1.5) BS06 SBY 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201537 3ze6:B (1.5) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201538 3ze6:B (1.5) BS02 FSX 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201539 3ze6:B (1.5) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201540 3ze6:B (1.5) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201541 3ze6:B (1.5) BS05 SBY 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201542 3ze6:B (1.5) BS06 SBY 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201543 3ze7:A (1.95) BS01 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201544 3ze7:A (1.95) BS02 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201545 3ze7:A (1.95) BS03 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201546 3ze7:B (1.95) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201547 3ze7:B (1.95) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201548 3ze7:B (1.95) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201549 3ze8:A (1.801) BS01 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201550 3ze8:A (1.801) BS02 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201551 3ze8:A (1.801) BS03 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201552 3ze8:A (1.801) BS04 C15 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201553 3ze8:A (1.801) BS05 C15 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201554 3ze8:B (1.801) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201555 3ze8:B (1.801) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201556 3ze8:B (1.801) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201557 3ze8:B (1.801) BS04 C15 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201558 3ze8:B (1.801) BS05 C15 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201559 3ze9:A (1.33) BS01 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201560 3ze9:A (1.33) BS02 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201561 3ze9:A (1.33) BS03 FSX 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201562 3ze9:B (1.33) BS01 FSX 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201563 3ze9:B (1.33) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201564 3ze9:B (1.33) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201565 3zea:A (1.82) BS01 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201566 3zea:A (1.82) BS02 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201567 3zea:A (1.82) BS03 SF4 1.12.2.1 GO:0008901 ... Q72AS4 N/A
    201568 3zea:B (1.82) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201569 3zea:B (1.82) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201570 3zea:B (1.82) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 N/A
    201571 3zeb:A (2.2) BS01 SV1 3.4.21.105 GO:0004252 ... P09391 23359682
    201572 3zec:A (2.2) BS01 ANP 2.7.7.108 GO:0000287 ... Q8E9K5 23738009
    201573 3zec:B (2.2) BS01 ANP 2.7.7.108 GO:0000287 ... Q8E9K5 23738009
    201574 3zed:A (2.2) BS01 peptide 2.7.7.48 GO:0000166 ... P22173 23283942
    201575 3zed:B (2.2) BS01 peptide 2.7.7.48 GO:0000166 ... P22173 23283942
    201576 3zed:C (2.2) BS01 peptide 2.7.7.48 GO:0000166 ... P22173 23283942
    201577 3zei:A (2.0) BS01 PLP 2.5.1.47 GO:0004124 ... P9WP55 23879381
    201578 3zei:A (2.0) BS02 AWH 2.5.1.47 GO:0004124 ... P9WP55 23879381 MOAD: ic50=0.103uM
    BindingDB: IC50=103nM
    201579 3zep:A (2.35) BS01 1NX 2.7.10.2 GO:0004672 ... P52333 23541670 MOAD: ic50=0.022uM
    BindingDB: IC50=22nM
    201580 3zep:B (2.35) BS01 1NX 2.7.10.2 GO:0004672 ... P52333 23541670 MOAD: ic50=0.022uM
    BindingDB: IC50=22nM
    201581 3zep:C (2.35) BS01 1NX 2.7.10.2 GO:0004672 ... P52333 23541670 MOAD: ic50=0.022uM
    BindingDB: IC50=22nM
    201582 3zep:D (2.35) BS01 1NX 2.7.10.2 GO:0004672 ... P52333 23541670 MOAD: ic50=0.022uM
    BindingDB: IC50=22nM
    201583 3zet:B (2.31) BS01 AMP 2.3.1.234 GO:0002949 ... E8XBD7 23471679
    201584 3zeu:B (1.653) BS01 ZN 2.3.1.234 GO:0002949 ... P40731 23471679
    201585 3zeu:B (1.653) BS02 MG 2.3.1.234 GO:0002949 ... P40731 23471679
    201586 3zeu:B (1.653) BS03 AGS 2.3.1.234 GO:0002949 ... P40731 23471679
    201587 3zeu:B (1.653) BS04 ADP 2.3.1.234 GO:0002949 ... P40731 23471679
    201588 3zeu:E (1.653) BS01 ZN 2.3.1.234 GO:0002949 ... P40731 23471679
    201589 3zeu:E (1.653) BS02 MG 2.3.1.234 GO:0002949 ... P40731 23471679
    201590 3zeu:E (1.653) BS03 AGS 2.3.1.234 GO:0002949 ... P40731 23471679
    201591 3zeu:E (1.653) BS04 ADP 2.3.1.234 GO:0002949 ... P40731 23471679
    201592 3zev:A (3.0) BS01 peptide ? GO:0004930 ... P20789 24453215
    201593 3zev:B (3.0) BS01 peptide ? GO:0004930 ... P20789 24453215
    201594 3zew:A (2.5) BS01 STU 2.7.10.1 GO:0004672 ... P54760 24677421
    201595 3zew:B (2.5) BS01 STU 2.7.10.1 GO:0004672 ... P54760 24677421
    201596 3zez:A (2.8) BS01 DUP 3.6.1.23 GO:0000287 ... A4ZF98 23333307
    201597 3zf0:A (2.9) BS01 DUP 3.6.1.23 GO:0000287 ... A4ZF98 23333307
    201598 3zf1:A (3.0) BS01 DUP 3.6.1.23 GO:0000287 ... A4ZF98 23333307
    201599 3zf4:A (3.1) BS01 DUP 3.6.1.23 GO:0000287 ... A4ZF98 23333307
    201600 3zf5:A (3.2) BS01 DUP 3.6.1.23 GO:0000287 ... A4ZF98 23333307

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).