SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    20001 1hjk:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 9253408
    20002 1hjk:B (2.3) BS03 MG 3.1.3.1 GO:0000287 ... P00634 9253408
    20003 1hjo:A (2.3) BS01 ADP 3.6.1.3 GO:0005524 ... P0DMV8 10216320
    20004 1hjs:A (1.87) BS01 EPE 3.2.1.89 GO:0004553 ... P83692 12761390
    20005 1hjt:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9533619
    20006 1hjt:A (1.7) BS02 NO 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 9533619
    20007 1hju:A (2.15) BS01 TRS 3.2.1.89 GO:0004553 ... P83692 12761390
    20008 1hju:D (2.15) BS01 TRS 3.2.1.89 GO:0004553 ... P83692 12761390
    20009 1hk1:A (2.65) BS01 T44 ? GO:0003677 ... P02768 12743361
    20010 1hk1:A (2.65) BS02 T44 ? GO:0003677 ... P02768 12743361
    20011 1hk1:A (2.65) BS03 T44 ? GO:0003677 ... P02768 12743361
    20012 1hk1:A (2.65) BS04 T44 ? GO:0003677 ... P02768 12743361
    20013 1hk2:A (2.8) BS01 T44 ? GO:0003677 ... P02768 12743361
    20014 1hk2:A (2.8) BS02 T44 ? GO:0003677 ... P02768 12743361
    20015 1hk2:A (2.8) BS03 T44 ? GO:0003677 ... P02768 12743361
    20016 1hk2:A (2.8) BS04 T44 ? GO:0003677 ... P02768 12743361
    20017 1hk3:A (2.8) BS01 T44 ? GO:0003677 ... P02768 12743361
    20018 1hk3:A (2.8) BS02 T44 ? GO:0003677 ... P02768 12743361
    20019 1hk3:A (2.8) BS03 T44 ? GO:0003677 ... P02768 12743361
    20020 1hk3:A (2.8) BS04 T44 ? GO:0003677 ... P02768 12743361
    20021 1hk4:A (2.4) BS01 T44 ? GO:0003677 ... P02768 12743361 MOAD: Kd=4.9uM
    20022 1hk5:A (2.7) BS01 T44 ? GO:0003677 ... P02768 12743361
    20023 1hk8:A (2.45) BS01 DGT 1.1.98.6 GO:0003824 ... P07071 12655046
    20024 1hk8:A (2.45) BS02 DGT 1.1.98.6 GO:0003824 ... P07071 12655046
    20025 1hk8:A (2.45) BS03 ZN 1.1.98.6 GO:0003824 ... P07071 12655046
    20026 1hkb:A (2.8) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    20027 1hkb:A (2.8) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    20028 1hkb:A (2.8) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    20029 1hkb:A (2.8) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    20030 1hkb:A (2.8) BS05 CA 2.7.1.1 GO:0001678 ... P19367 9493266
    20031 1hkb:A (2.8) BS06 CA 2.7.1.1 GO:0001678 ... P19367 9493266
    20032 1hkb:B (2.8) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    20033 1hkb:B (2.8) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    20034 1hkb:B (2.8) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 9493266
    20035 1hkb:B (2.8) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 9493266
    20036 1hkb:B (2.8) BS05 CA 2.7.1.1 GO:0001678 ... P19367 9493266
    20037 1hkb:B (2.8) BS06 CA 2.7.1.1 GO:0001678 ... P19367 9493266
    20038 1hkc:A (2.8) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 9735292
    20039 1hkc:A (2.8) BS02 PO4 2.7.1.1 GO:0001678 ... P19367 9735292
    20040 1hkc:A (2.8) BS03 PO4 2.7.1.1 GO:0001678 ... P19367 9735292
    20041 1hkd:A (2.09) BS01 CA ? GO:0030246 ... P02867 N/A
    20042 1hkd:A (2.09) BS02 MN ? GO:0030246 ... P02867 N/A
    20043 1hkd:A (2.09) BS03 GYP ? GO:0030246 ... P02867 N/A
    20044 1hkd:B (2.09) BS01 GYP ? GO:0030246 ... P02867 N/A
    20045 1hkd:C (2.09) BS01 CA ? GO:0030246 ... P02867 N/A
    20046 1hkd:C (2.09) BS02 MN ? GO:0030246 ... P02867 N/A
    20047 1hkd:C (2.09) BS03 GYP ? GO:0030246 ... P02867 N/A
    20048 1hkd:D (2.09) BS01 GYP ? GO:0030246 ... P02867 N/A
    20049 1hki:A (2.55) BS01 NA1 3.2.1.14 GO:0004553 ... Q13231 12639956
    20050 1hki:A (2.55) BS02 ALI 3.2.1.14 GO:0004553 ... Q13231 12639956
    20051 1hkj:A (2.6) BS01 NA1 3.2.1.14 GO:0004553 ... Q13231 12639956
    20052 1hkj:A (2.6) BS02 AMI 3.2.1.14 GO:0004553 ... Q13231 12639956
    20053 1hkk:A (1.85) BS01 AMI 3.2.1.14 GO:0004553 ... Q13231 12639956
    20054 1hkk:A (1.85) BS02 AMI 3.2.1.14 GO:0004553 ... Q13231 12639956
    20055 1hkk:A (1.85) BS03 ZN 3.2.1.14 GO:0004553 ... Q13231 12639956
    20056 1hkk:A (1.85) BS04 ZN 3.2.1.14 GO:0004553 ... Q13231 12639956
    20057 1hkm:A (2.55) BS01 ALI 3.2.1.14 GO:0004553 ... Q13231 12639956
    20058 1hkn:C (2.0) BS01 N2M ? GO:0001658 ... P05230 12676958
    20059 1hkn:D (2.0) BS01 N2M ? GO:0001658 ... P05230 12676958
    20060 1hko:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 8613986
    20061 1hku:A (2.3) BS01 NAD 1.1.1.- GO:0003714 ... Q9Z2F5 12805226 MOAD: ic50~65nM
    20062 1hkv:A (2.6) BS01 PLP 4.1.1.20 GO:0003824 ... P9WIU7 12637582
    20063 1hkv:A (2.6) BS02 LYS 4.1.1.20 GO:0003824 ... P9WIU7 12637582
    20064 1hkv:B (2.6) BS01 LYS 4.1.1.20 GO:0003824 ... P9WIU7 12637582
    20065 1hkv:B (2.6) BS02 PLP 4.1.1.20 GO:0003824 ... P9WIU7 12637582
    20066 1hkx:A (2.65) BS01 TBR 2.7.11.17 GO:0004683 ... P11798 12769848
    20067 1hl2:A (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    20068 1hl2:B (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    20069 1hl2:C (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    20070 1hl2:D (1.8) BS01 3PY 4.1.3.3 GO:0005737 ... P0A6L4 12711733
    20071 1hl3:A (3.1) BS01 peptide 1.1.1.- GO:0003714 ... Q9Z2F5 12805226
    20072 1hl3:A (3.1) BS02 NAD 1.1.1.- GO:0003714 ... Q9Z2F5 12805226
    20073 1hl4:A (1.82) BS01 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20074 1hl4:B (1.82) BS01 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20075 1hl5:A (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20076 1hl5:A (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20077 1hl5:B (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20078 1hl5:B (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20079 1hl5:C (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20080 1hl5:C (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20081 1hl5:C (1.8) BS03 CA 1.15.1.1 GO:0000303 ... P00441 12729761
    20082 1hl5:D (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20083 1hl5:D (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20084 1hl5:D (1.8) BS03 CA 1.15.1.1 GO:0000303 ... P00441 12729761
    20085 1hl5:E (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20086 1hl5:E (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20087 1hl5:F (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20088 1hl5:F (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20089 1hl5:G (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20090 1hl5:G (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20091 1hl5:H (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20092 1hl5:H (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20093 1hl5:H (1.8) BS03 CA 1.15.1.1 GO:0000303 ... P00441 12729761
    20094 1hl5:I (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20095 1hl5:I (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20096 1hl5:J (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20097 1hl5:J (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20098 1hl5:K (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20099 1hl5:K (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20100 1hl5:L (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20101 1hl5:L (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20102 1hl5:M (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20103 1hl5:M (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20104 1hl5:N (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20105 1hl5:N (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20106 1hl5:O (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20107 1hl5:O (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20108 1hl5:P (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20109 1hl5:P (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20110 1hl5:Q (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20111 1hl5:Q (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20112 1hl5:S (1.8) BS01 CU 1.15.1.1 GO:0000303 ... P00441 12729761
    20113 1hl5:S (1.8) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 12729761
    20114 1hl7:A (1.73) BS01 BD1 ? GO:0003824 ... Q8GJP7 15081810
    20115 1hl7:B (1.73) BS01 BD1 ? GO:0003824 ... Q8GJP7 15081810
    20116 1hl9:A (2.25) BS01 FUF 3.2.1.51 GO:0004560 ... Q9WYE2 14715651
    20117 1hl9:B (2.25) BS01 FUF 3.2.1.51 GO:0004560 ... Q9WYE2 14715651
    20118 1hlb:A (2.5) BS01 HEM ? GO:0005576 ... P80018 7650740
    20119 1hlc:A (2.9) BS01 BGC ? GO:0005515 ... P05162 8262940
    20120 1hlc:A (2.9) BS02 GAL ? GO:0005515 ... P05162 8262940
    20121 1hlc:B (2.9) BS01 BGC ? GO:0005515 ... P05162 8262940
    20122 1hlc:B (2.9) BS02 GAL ? GO:0005515 ... P05162 8262940
    20123 1hld:A (2.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 8172897
    20124 1hld:A (2.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 8172897
    20125 1hld:A (2.1) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 8172897
    20126 1hld:A (2.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 8172897
    20127 1hld:A (2.1) BS05 BRB 1.1.1.1 GO:0004022 ... P00327 8172897
    20128 1hld:B (2.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 8172897
    20129 1hld:B (2.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 8172897
    20130 1hld:B (2.1) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 8172897
    20131 1hld:B (2.1) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 8172897
    20132 1hld:B (2.1) BS05 BRB 1.1.1.1 GO:0004022 ... P00327 8172897
    20133 1hlf:A (2.26) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 11741774
    20134 1hlf:A (2.26) BS02 GL4 2.4.1.1 GO:0004645 ... P00489 11741774 MOAD: Ki=2.3uM
    BindingDB: Ki=5100nM
    20135 1hlk:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    20136 1hlk:A (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    20137 1hlk:A (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    20138 1hlk:B (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    20139 1hlk:B (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    20140 1hlk:B (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    20141 1hlm:A (2.9) BS01 HEM ? GO:0019825 ... P80017 2049384
    20142 1hlo:A (2.8) BS01 dna ? GO:0046983 ... P61244 9115440
    20143 1hlo:A (2.8) BS02 dna ? GO:0046983 ... P61244 9115440
    20144 1hlo:B (2.8) BS01 dna ? GO:0046983 ... P61244 9115440
    20145 1hlo:B (2.8) BS02 dna ? GO:0046983 ... P61244 9115440
    20146 1hlp:A (3.2) BS01 NAD 1.1.1.37 GO:0003824 ... Q07841 17812611
    20147 1hlp:B (3.2) BS01 NAD 1.1.1.37 GO:0003824 ... Q07841 17812611
    20148 1hlq:A (1.45) BS01 SF4 ? GO:0009055 ... P80882 12925788
    20149 1hlq:B (1.45) BS01 SF4 ? GO:0009055 ... P80882 12925788
    20150 1hlq:C (1.45) BS01 SF4 ? GO:0009055 ... P80882 12925788
    20151 1hls:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 8025104
    20152 1hlt:H (3.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 7947765
    20153 1hlt:H (3.0) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 7947765
    20154 1hlt:H (3.0) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 7947765
    20155 1hlt:K (3.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 7947765
    20156 1hlt:K (3.0) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 7947765
    20157 1hlt:K (3.0) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 7947765
    20158 1hlu:A (2.65) BS01 ATP 3.6.4.- GO:0001738 ... P60712 8918942
    20159 1hlv:A (2.5) BS01 dna ? GO:0003677 ... P07199 11726497
    20160 1hlv:A (2.5) BS02 dna ? GO:0003677 ... P07199 11726497
    20161 1hlz:A (2.8) BS01 dna ? GO:0003700 ... P20393 11669620
    20162 1hlz:A (2.8) BS02 dna ? GO:0003700 ... P20393 11669620
    20163 1hlz:A (2.8) BS03 ZN ? GO:0003700 ... P20393 11669620
    20164 1hlz:A (2.8) BS04 ZN ? GO:0003700 ... P20393 11669620
    20165 1hlz:B (2.8) BS01 dna ? GO:0003700 ... P20393 11669620
    20166 1hlz:B (2.8) BS02 dna ? GO:0003700 ... P20393 11669620
    20167 1hlz:B (2.8) BS03 ZN ? GO:0003700 ... P20393 11669620
    20168 1hlz:B (2.8) BS04 ZN ? GO:0003700 ... P20393 11669620
    20169 1hm2:A (2.0) BS01 MAN 4.2.2.5 GO:0005576 ... Q59288 11327856
    20170 1hm2:A (2.0) BS02 GCU 4.2.2.5 GO:0005576 ... Q59288 11327856
    20171 1hm2:A (2.0) BS03 ASG 4.2.2.5 GO:0005576 ... Q59288 11327856
    20172 1hm2:A (2.0) BS04 IDR 4.2.2.5 GO:0005576 ... Q59288 11327856
    20173 1hm2:A (2.0) BS05 ASG 4.2.2.5 GO:0005576 ... Q59288 11327856
    20174 1hm2:A (2.0) BS06 CA 4.2.2.5 GO:0005576 ... Q59288 11327856
    20175 1hm3:A (2.1) BS01 MAN 4.2.2.5 GO:0005576 ... Q59288 11327856
    20176 1hm3:A (2.1) BS02 GCU 4.2.2.5 GO:0005576 ... Q59288 11327856
    20177 1hm3:A (2.1) BS03 CA 4.2.2.5 GO:0005576 ... Q59288 11327856
    20178 1hm8:A (2.5) BS01 ACO 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20179 1hm8:B (2.5) BS01 ACO 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20180 1hm9:A (1.75) BS01 CA 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20181 1hm9:A (1.75) BS02 CA 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20182 1hm9:A (1.75) BS03 ACO 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20183 1hm9:A (1.75) BS04 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20184 1hm9:B (1.75) BS01 CA 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20185 1hm9:B (1.75) BS02 CA 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20186 1hm9:B (1.75) BS03 ACO 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20187 1hm9:B (1.75) BS04 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11118459
    20188 1hmd:A (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748
    20189 1hmd:B (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748
    20190 1hmd:C (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748
    20191 1hmd:D (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748
    20192 1hmk:A (2.0) BS01 CA 2.4.1.22 GO:0003796 ... P00712 9887272
    20193 1hml:A (1.7) BS01 CA 2.4.1.22 GO:0004461 ... P00709 8366079
    20194 1hmo:A (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748
    20195 1hmo:A (2.0) BS02 OXY ? GO:0005506 ... P02246 2016748
    20196 1hmo:B (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748
    20197 1hmo:B (2.0) BS02 OXY ? GO:0005506 ... P02246 2016748
    20198 1hmo:C (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748
    20199 1hmo:C (2.0) BS02 OXY ? GO:0005506 ... P02246 2016748
    20200 1hmo:D (2.0) BS01 FEO ? GO:0005506 ... P02246 2016748

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).