SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    204001 4a3f:A (3.5) BS01 rna 2.7.7.6 GO:0001172 ... P04050 22056778
    204002 4a3f:A (3.5) BS02 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204003 4a3f:A (3.5) BS03 APC 2.7.7.6 GO:0001172 ... P04050 22056778
    204004 4a3f:A (3.5) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204005 4a3f:A (3.5) BS05 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204006 4a3f:A (3.5) BS06 MG 2.7.7.6 GO:0001172 ... P04050 22056778
    204007 4a3f:B (3.5) BS01 rna 2.7.7.6 GO:0001172 ... P08518 22056778
    204008 4a3f:B (3.5) BS02 dna 2.7.7.6 GO:0001172 ... P08518 22056778
    204009 4a3f:B (3.5) BS03 APC 2.7.7.6 GO:0001172 ... P08518 22056778
    204010 4a3f:B (3.5) BS04 ZN 2.7.7.6 GO:0001172 ... P08518 22056778
    204011 4a3f:C (3.5) BS01 ZN ? GO:0000428 ... P16370 22056778
    204012 4a3f:I (3.5) BS01 ZN ? GO:0001172 ... P27999 22056778
    204013 4a3f:I (3.5) BS02 ZN ? GO:0001172 ... P27999 22056778
    204014 4a3f:J (3.5) BS01 ZN ? GO:0001172 ... P22139 22056778
    204015 4a3f:L (3.5) BS01 ZN ? GO:0001172 ... P40422 22056778
    204016 4a3g:A (3.5) BS01 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204017 4a3g:A (3.5) BS02 rna 2.7.7.6 GO:0001172 ... P04050 22056778
    204018 4a3g:A (3.5) BS03 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204019 4a3g:A (3.5) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204020 4a3g:A (3.5) BS05 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204021 4a3g:A (3.5) BS06 MG 2.7.7.6 GO:0001172 ... P04050 22056778
    204022 4a3g:B (3.5) BS01 rna 2.7.7.6 GO:0001172 ... P08518 22056778
    204023 4a3g:B (3.5) BS02 dna 2.7.7.6 GO:0001172 ... P08518 22056778
    204024 4a3g:B (3.5) BS03 ZN 2.7.7.6 GO:0001172 ... P08518 22056778
    204025 4a3g:C (3.5) BS01 ZN ? GO:0000428 ... P16370 22056778
    204026 4a3g:I (3.5) BS01 ZN ? GO:0001172 ... P27999 22056778
    204027 4a3g:I (3.5) BS02 ZN ? GO:0001172 ... P27999 22056778
    204028 4a3g:J (3.5) BS01 ZN ? GO:0001172 ... P22139 22056778
    204029 4a3g:L (3.5) BS01 ZN ? GO:0001172 ... P40422 22056778
    204030 4a3h:A (1.65) BS01 DCB 3.2.1.4 GO:0000272 ... O85465 9718293
    204031 4a3i:A (3.8) BS01 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204032 4a3i:A (3.8) BS02 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204033 4a3i:A (3.8) BS03 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204034 4a3i:A (3.8) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204035 4a3i:A (3.8) BS05 MG 2.7.7.6 GO:0001172 ... P04050 22056778
    204036 4a3i:B (3.8) BS01 dna 2.7.7.6 GO:0001172 ... P08518 22056778
    204037 4a3i:B (3.8) BS02 ZN 2.7.7.6 GO:0001172 ... P08518 22056778
    204038 4a3i:C (3.8) BS01 ZN ? GO:0000428 ... P16370 22056778
    204039 4a3i:I (3.8) BS01 ZN ? GO:0001172 ... P27999 22056778
    204040 4a3i:I (3.8) BS02 ZN ? GO:0001172 ... P27999 22056778
    204041 4a3i:J (3.8) BS01 ZN ? GO:0001172 ... P22139 22056778
    204042 4a3i:L (3.8) BS01 ZN ? GO:0001172 ... P40422 22056778
    204043 4a3j:A (3.7) BS01 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204044 4a3j:A (3.7) BS02 rna 2.7.7.6 GO:0001172 ... P04050 22056778
    204045 4a3j:A (3.7) BS03 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204046 4a3j:A (3.7) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204047 4a3j:A (3.7) BS05 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204048 4a3j:A (3.7) BS06 MG 2.7.7.6 GO:0001172 ... P04050 22056778
    204049 4a3j:A (3.7) BS07 G2P 2.7.7.6 GO:0001172 ... P04050 22056778
    204050 4a3j:B (3.7) BS01 rna 2.7.7.6 GO:0001172 ... P08518 22056778
    204051 4a3j:B (3.7) BS02 dna 2.7.7.6 GO:0001172 ... P08518 22056778
    204052 4a3j:B (3.7) BS03 ZN 2.7.7.6 GO:0001172 ... P08518 22056778
    204053 4a3j:B (3.7) BS04 G2P 2.7.7.6 GO:0001172 ... P08518 22056778
    204054 4a3j:C (3.7) BS01 ZN ? GO:0000428 ... P16370 22056778
    204055 4a3j:I (3.7) BS01 ZN ? GO:0001172 ... P27999 22056778
    204056 4a3j:I (3.7) BS02 ZN ? GO:0001172 ... P27999 22056778
    204057 4a3j:J (3.7) BS01 ZN ? GO:0001172 ... P22139 22056778
    204058 4a3j:L (3.7) BS01 ZN ? GO:0001172 ... P40422 22056778
    204059 4a3k:A (3.5) BS01 rna 2.7.7.6 GO:0001172 ... P04050 22056778
    204060 4a3k:A (3.5) BS02 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204061 4a3k:A (3.5) BS03 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204062 4a3k:A (3.5) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204063 4a3k:A (3.5) BS05 MG 2.7.7.6 GO:0001172 ... P04050 22056778
    204064 4a3k:B (3.5) BS01 rna 2.7.7.6 GO:0001172 ... P08518 22056778
    204065 4a3k:B (3.5) BS02 dna 2.7.7.6 GO:0001172 ... P08518 22056778
    204066 4a3k:B (3.5) BS03 ZN 2.7.7.6 GO:0001172 ... P08518 22056778
    204067 4a3k:C (3.5) BS01 ZN ? GO:0000428 ... P16370 22056778
    204068 4a3k:I (3.5) BS01 ZN ? GO:0001172 ... P27999 22056778
    204069 4a3k:I (3.5) BS02 ZN ? GO:0001172 ... P27999 22056778
    204070 4a3k:J (3.5) BS01 ZN ? GO:0001172 ... P22139 22056778
    204071 4a3l:A (3.5) BS01 rna 2.7.7.6 GO:0001172 ... P04050 22056778
    204072 4a3l:A (3.5) BS02 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204073 4a3l:A (3.5) BS03 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204074 4a3l:A (3.5) BS04 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204075 4a3l:A (3.5) BS05 MG 2.7.7.6 GO:0001172 ... P04050 22056778
    204076 4a3l:A (3.5) BS06 APC 2.7.7.6 GO:0001172 ... P04050 22056778
    204077 4a3l:B (3.5) BS01 rna 2.7.7.6 GO:0001172 ... P08518 22056778
    204078 4a3l:B (3.5) BS02 dna 2.7.7.6 GO:0001172 ... P08518 22056778
    204079 4a3l:B (3.5) BS03 ZN 2.7.7.6 GO:0001172 ... P08518 22056778
    204080 4a3l:B (3.5) BS04 APC 2.7.7.6 GO:0001172 ... P08518 22056778
    204081 4a3l:C (3.5) BS01 ZN ? GO:0000428 ... P16370 22056778
    204082 4a3l:I (3.5) BS01 ZN ? GO:0001172 ... P27999 22056778
    204083 4a3l:I (3.5) BS02 ZN ? GO:0001172 ... P27999 22056778
    204084 4a3l:J (3.5) BS01 ZN ? GO:0001172 ... P22139 22056778
    204085 4a3l:L (3.5) BS01 ZN ? GO:0001172 ... P40422 22056778
    204086 4a3m:A (3.9) BS01 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204087 4a3m:A (3.9) BS02 rna 2.7.7.6 GO:0001172 ... P04050 22056778
    204088 4a3m:A (3.9) BS03 dna 2.7.7.6 GO:0001172 ... P04050 22056778
    204089 4a3m:A (3.9) BS04 APC 2.7.7.6 GO:0001172 ... P04050 22056778
    204090 4a3m:A (3.9) BS05 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204091 4a3m:A (3.9) BS06 ZN 2.7.7.6 GO:0001172 ... P04050 22056778
    204092 4a3m:A (3.9) BS07 MG 2.7.7.6 GO:0001172 ... P04050 22056778
    204093 4a3m:B (3.9) BS01 rna 2.7.7.6 GO:0001172 ... P08518 22056778
    204094 4a3m:B (3.9) BS02 dna 2.7.7.6 GO:0001172 ... P08518 22056778
    204095 4a3m:B (3.9) BS03 APC 2.7.7.6 GO:0001172 ... P08518 22056778
    204096 4a3m:B (3.9) BS04 ZN 2.7.7.6 GO:0001172 ... P08518 22056778
    204097 4a3m:C (3.9) BS01 ZN ? GO:0000428 ... P16370 22056778
    204098 4a3m:I (3.9) BS01 ZN ? GO:0001172 ... P27999 22056778
    204099 4a3m:I (3.9) BS02 ZN ? GO:0001172 ... P27999 22056778
    204100 4a3m:J (3.9) BS01 ZN ? GO:0001172 ... P22139 22056778
    204101 4a3m:L (3.9) BS01 ZN ? GO:0001172 ... P40422 22056778
    204102 4a3n:A (2.4) BS01 ZN ? N/A Q9H6I2 23061670
    204103 4a3n:A (2.4) BS02 ZN ? N/A Q9H6I2 23061670
    204104 4a3q:A (2.15) BS01 PLP 5.1.1.1 GO:0003824 ... P63479 22194336
    204105 4a3q:B (2.15) BS01 PLP 5.1.1.1 GO:0003824 ... P63479 22194336
    204106 4a3u:A (1.7) BS01 FMN ? GO:0005829 ... Q5NLA1 23033175
    204107 4a3u:A (1.7) BS02 ACT ? GO:0005829 ... Q5NLA1 23033175
    204108 4a3u:A (1.7) BS03 NCA ? GO:0005829 ... Q5NLA1 23033175
    204109 4a3u:B (1.7) BS01 FMN ? GO:0005829 ... Q5NLA1 23033175
    204110 4a3u:B (1.7) BS02 ACT ? GO:0005829 ... Q5NLA1 23033175
    204111 4a3u:B (1.7) BS03 NCA ? GO:0005829 ... Q5NLA1 23033175
    204112 4a3w:A (2.16) BS01 ZN 3.4.-.- GO:0006508 ... O29917 22937112
    204113 4a3w:A (2.16) BS02 ZN 3.4.-.- GO:0006508 ... O29917 22937112
    204114 4a3x:A (1.65) BS01 GAL ? N/A Q6VBJ0 22349222
    204115 4a3x:A (1.65) BS02 CA ? N/A Q6VBJ0 22349222
    204116 4a3x:A (1.65) BS03 CA ? N/A Q6VBJ0 22349222
    204117 4a3z:A (1.55) BS01 CA 3.2.1.50 N/A A0A0H2YU91 22479408
    204118 4a41:A (1.55) BS01 CA 3.2.1.50 N/A Q8XM24 22479408
    204119 4a41:A (1.55) BS02 GAL 3.2.1.50 N/A Q8XM24 22479408 MOAD: Kd=591uM
    204120 4a42:A (1.55) BS01 CA 3.2.1.50 N/A Q8XM24 22479408
    204121 4a42:B (1.55) BS01 CA 3.2.1.50 N/A Q8XM24 22479408
    204122 4a44:A (1.7) BS01 CA ? N/A Q8XM24 22479408
    204123 4a45:A (1.75) BS01 CA 3.2.1.50 N/A Q8XM24 22479408
    204124 4a46:A (1.85) BS01 ZN ? GO:0005507 ... P73213 23926594
    204125 4a46:B (1.85) BS01 ZN ? GO:0005507 ... P73213 23926594
    204126 4a46:C (1.85) BS01 ZN ? GO:0005507 ... P73213 23926594
    204127 4a46:D (1.85) BS01 ZN ? GO:0005507 ... P73213 23926594
    204128 4a47:A (1.9) BS01 ZN ? GO:0005507 ... P73213 24050657
    204129 4a47:B (1.9) BS01 ZN ? GO:0005507 ... P73213 24050657
    204130 4a47:C (1.9) BS01 ZN ? GO:0005507 ... P73213 24050657
    204131 4a47:D (1.9) BS01 ZN ? GO:0005507 ... P73213 24050657
    204132 4a48:A (1.4) BS01 ZN 7.2.2.8 GO:0046872 ... P73241 24050657
    204133 4a48:A (1.4) BS02 MG 7.2.2.8 GO:0046872 ... P73241 24050657
    204134 4a48:B (1.4) BS01 ZN 7.2.2.8 GO:0046872 ... P73241 24050657
    204135 4a49:A (2.214) BS01 ZN 2.3.2.27 GO:0004842 ... P22681 22266821
    204136 4a49:A (2.214) BS02 ZN 2.3.2.27 GO:0004842 ... P22681 22266821
    204137 4a4a:A (1.9) BS01 GAL 3.2.1.50 N/A Q8XM24 22090394
    204138 4a4a:A (1.9) BS02 CA 3.2.1.50 N/A Q8XM24 22090394
    204139 4a4b:A (2.789) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 22266821
    204140 4a4b:A (2.789) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 22266821
    204141 4a4b:A (2.789) BS03 ZN 2.3.2.27 GO:0001784 ... P22681 22266821
    204142 4a4b:A (2.789) BS04 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    204143 4a4c:A (2.704) BS01 peptide 2.3.2.27 GO:0001784 ... P22681 22266821
    204144 4a4c:A (2.704) BS02 ZN 2.3.2.27 GO:0001784 ... P22681 22266821
    204145 4a4c:A (2.704) BS03 ZN 2.3.2.27 GO:0001784 ... P22681 22266821
    204146 4a4c:A (2.704) BS04 CA 2.3.2.27 GO:0001784 ... P22681 22266821
    204147 4a4e:A (-1.00) BS01 2MR ? GO:0003723 ... Q16637 22101937
    204148 4a4f:A (-1.00) BS01 2MR ? GO:0003723 ... O75940 22101937
    204149 4a4g:A (-1.00) BS01 DA2 ? GO:0003723 ... Q16637 22101937
    204150 4a4h:A (-1.00) BS01 DA2 ? GO:0003723 ... O75940 22101937
    204151 4a4j:A (1.25) BS01 ZN 7.2.2.8 GO:0046872 ... P73241 24050657
    204152 4a4k:A (3.25) BS01 ZN 3.6.4.13 N/A P35207 22114319
    204153 4a4k:C (3.25) BS01 ZN 3.6.4.13 N/A P35207 22114319
    204154 4a4k:E (3.25) BS01 ZN 3.6.4.13 N/A P35207 22114319
    204155 4a4k:G (3.25) BS01 ZN 3.6.4.13 N/A P35207 22114319
    204156 4a4k:I (3.25) BS01 ZN 3.6.4.13 N/A P35207 22114319
    204157 4a4l:A (2.35) BS01 ZN 2.7.11.21 GO:0004672 ... P53350 22154349
    204158 4a4l:A (2.35) BS02 939 2.7.11.21 GO:0004672 ... P53350 22154349 MOAD: ic50=0.015uM
    BindingDB: IC50=15nM
    204159 4a4m:A (3.3) BS01 peptide ? GO:0000139 ... P02699 22198838
    204160 4a4m:A (3.3) BS02 RET ? GO:0000139 ... P02699 22198838
    204161 4a4o:A (2.7) BS01 ZN 2.7.11.21 GO:0004672 ... P53350 22154349
    204162 4a4o:A (2.7) BS02 664 2.7.11.21 GO:0004672 ... P53350 22154349 BindingDB: IC50=9nM
    204163 4a4q:A (1.8) BS01 UX9 3.4.23.16 GO:0004190 ... Q8Q3H0 22376008
    204164 4a4q:B (1.8) BS01 UX9 3.4.23.16 GO:0004190 ... Q8Q3H0 22376008
    204165 4a4v:A (2.0) BS01 YFD ? GO:0003677 ... P37231 23286787 BindingDB: EC50=1200nM, Kd=287nM
    204166 4a4v:B (2.0) BS01 YFD ? GO:0003677 ... P37231 23286787 BindingDB: EC50=1200nM, Kd=287nM
    204167 4a4w:A (2.0) BS01 YFB ? GO:0003677 ... P37231 23286787 BindingDB: Kd=19nM, EC50=73nM
    204168 4a4w:B (2.0) BS01 YFB ? GO:0003677 ... P37231 23286787 BindingDB: Kd=19nM, EC50=73nM
    204169 4a4x:A (2.4) BS01 JUP 2.7.11.1 GO:0004672 ... P51955 22404346 MOAD: ic50=0.059uM
    BindingDB: IC50=2700nM
    204170 4a4z:A (2.4) BS01 ANP 3.6.4.13 GO:0003676 ... P35207 22114319
    204171 4a50:A (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204172 4a50:A (2.75) BS02 DQ6 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=11.1nM
    204173 4a50:A (2.75) BS03 DQ7 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=10.2nM, EC50=73nM
    204174 4a51:A (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204175 4a51:A (2.75) BS02 MG ? GO:0003777 ... P52732 22248262
    204176 4a51:A (2.75) BS03 DQ8 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=185.8nM
    204177 4a51:B (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204178 4a51:B (2.75) BS02 DQ8 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=185.8nM
    204179 4a51:C (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204180 4a51:C (2.75) BS02 DQ8 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=185.8nM
    204181 4a51:D (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204182 4a51:D (2.75) BS02 MG ? GO:0003777 ... P52732 22248262
    204183 4a51:D (2.75) BS03 DQ8 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=185.8nM
    204184 4a51:E (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204185 4a51:E (2.75) BS02 DQ8 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=185.8nM
    204186 4a51:F (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204187 4a51:F (2.75) BS02 DQ8 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=185.8nM
    204188 4a51:G (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    204189 4a51:G (2.75) BS02 ADP ? GO:0003777 ... P52732 22248262
    204190 4a51:G (2.75) BS03 DQ8 ? GO:0003777 ... P52732 22248262 BindingDB: Ki=185.8nM
    204191 4a52:A (-1.00) BS01 IM2 2.-.-.- GO:0009252 ... O34816 22579252
    204192 4a55:A (3.5) BS01 P08 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001889 ... P42337 22120714
    204193 4a55:A (3.5) BS02 P08 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001889 ... P42337 22120714
    204194 4a59:A (2.2) BS01 AMP 3.6.1.15 GO:0005576 ... Q27893 22130673
    204195 4a59:B (2.2) BS01 AMP 3.6.1.15 GO:0005576 ... Q27893 22130673
    204196 4a59:C (2.2) BS01 AMP 3.6.1.15 GO:0005576 ... Q27893 22130673
    204197 4a59:D (2.2) BS01 AMP 3.6.1.15 GO:0005576 ... Q27893 22130673
    204198 4a59:D (2.2) BS02 AMP 3.6.1.15 GO:0005576 ... Q27893 22130673
    204199 4a5a:A (2.85) BS01 ANP 3.6.1.15 GO:0005576 ... Q27893 22130673
    204200 4a5a:B (2.85) BS01 ANP 3.6.1.15 GO:0005576 ... Q27893 22130673

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).