SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    216001 4d5d:B (1.902) BS10 C8E ? GO:0098657 ... Q48391 26015567
    216002 4d5d:B (1.902) BS11 C8E ? GO:0098657 ... Q48391 26015567
    216003 4d5d:B (1.902) BS12 C8E ? GO:0098657 ... Q48391 26015567
    216004 4d5d:B (1.902) BS13 C8E ? GO:0098657 ... Q48391 26015567
    216005 4d5e:A (1.43) BS01 FAD 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216006 4d5e:A (1.43) BS02 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216007 4d5e:A (1.43) BS03 MG 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216008 4d5e:A (1.43) BS04 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216009 4d5e:B (1.43) BS01 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216010 4d5e:B (1.43) BS02 FAD 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216011 4d5e:B (1.43) BS03 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216012 4d5e:B (1.43) BS04 MG 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216013 4d5g:A (2.0) BS01 FAD 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216014 4d5g:A (2.0) BS02 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216015 4d5g:A (2.0) BS03 MG 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216016 4d5g:A (2.0) BS04 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216017 4d5g:B (2.0) BS01 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216018 4d5g:B (2.0) BS02 FAD 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216019 4d5g:B (2.0) BS03 TPP 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216020 4d5g:B (2.0) BS04 MG 3.7.1.11 GO:0000287 ... P0CH62 25382418
    216021 4d5h:A (1.75) BS01 9RM 2.7.10.2 GO:0004672 ... Q00944 25650936
    216022 4d5i:A (1.42) BS01 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216023 4d5i:A (1.42) BS02 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216024 4d5i:A (1.42) BS03 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216025 4d5i:A (1.42) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216026 4d5i:A (1.42) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216027 4d5j:A (1.5) BS01 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216028 4d5j:A (1.5) BS02 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216029 4d5j:A (1.5) BS03 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216030 4d5j:A (1.5) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216031 4d5j:A (1.5) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216032 4d5l:A (9.0) BS01 rna ? GO:0000028 ... G1TLT8 25601755
    216033 4d5l:B (9.0) BS01 rna ? GO:0003735 ... G1SS70 25601755
    216034 4d5l:C (9.0) BS01 rna ? GO:0003723 ... G1SV32 25601755
    216035 4d5l:D (9.0) BS01 rna 4.2.99.18 GO:0003723 ... G1TNM3 25601755
    216036 4d5l:E (9.0) BS01 rna ? GO:0003723 ... G1TK17 25601755
    216037 4d5l:F (9.0) BS01 rna ? GO:0003723 ... G1TFM5 25601755
    216038 4d5l:G (9.0) BS01 rna ? GO:0003735 ... G1TM55 25601755
    216039 4d5l:H (9.0) BS01 rna ? GO:0003735 ... G1SVB0 25601755
    216040 4d5l:I (9.0) BS01 rna ? GO:0003735 ... G1TJW1 25601755
    216041 4d5l:J (9.0) BS01 rna ? GO:0003723 ... B7NZS8 25601755
    216042 4d5l:K (9.0) BS01 rna ? GO:0003723 ... G1T168 25601755
    216043 4d5l:L (9.0) BS01 rna ? GO:0003735 ... G1TRM4 25601755
    216044 4d5l:M (9.0) BS01 rna ? GO:0003735 ... G1SFR8 25601755
    216045 4d5l:N (9.0) BS01 rna ? GO:0003735 ... G1SP51 25601755
    216046 4d5l:O (9.0) BS01 rna ? GO:0003735 ... G1T1F0 25601755
    216047 4d5l:P (9.0) BS01 rna ? GO:0000028 ... G1U0Q2 25601755
    216048 4d5l:Q (9.0) BS01 rna ? GO:0000462 ... G1SGX4 25601755
    216049 4d5l:R (9.0) BS01 rna ? GO:0003735 ... G1TU13 25601755
    216050 4d5l:S (9.0) BS01 rna ? GO:0003676 ... G1TPG3 25601755
    216051 4d5l:T (9.0) BS01 rna ? GO:0000028 ... G1TN62 25601755
    216052 4d5l:U (9.0) BS01 rna ? GO:0003723 ... G1SIZ2 25601755
    216053 4d5l:W (9.0) BS01 rna ? GO:0003735 ... G1TG89 25601755
    216054 4d5l:X (9.0) BS01 rna ? GO:0003735 ... G1SZ47 25601755
    216055 4d5l:Y (9.0) BS01 rna ? GO:0003735 ... G1TS40 25601755
    216056 4d5l:Z (9.0) BS01 rna ? GO:0003735 ... G1TDB3 25601755
    216057 4d5l:a (9.0) BS01 rna ? GO:0003729 ... G1TFE8 25601755
    216058 4d5l:b (9.0) BS01 rna ? GO:0003735 ... G1TZ76 25601755
    216059 4d5l:c (9.0) BS01 rna ? GO:0000028 ... G1TIB4 25601755
    216060 4d5l:d (9.0) BS01 rna ? GO:0002181 ... G1U7M4 25601755
    216061 4d5l:e (9.0) BS01 rna ? GO:0003735 ... G1T8A2 25601755
    216062 4d5l:f (9.0) BS01 rna ? GO:0003735 ... G1SK22 25601755
    216063 4d5l:g (9.0) BS01 rna ? GO:0001891 ... G1SJB4 25601755
    216064 4d5o:A (1.52) BS01 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216065 4d5o:A (1.52) BS02 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216066 4d5o:A (1.52) BS03 GAL 3.2.1.91 GO:0004553 ... P62694 25765184
    216067 4d5o:A (1.52) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216068 4d5o:A (1.52) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216069 4d5p:A (1.89) BS01 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216070 4d5p:A (1.89) BS02 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216071 4d5p:A (1.89) BS03 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216072 4d5p:A (1.89) BS04 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216073 4d5q:A (1.68) BS01 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216074 4d5q:A (1.68) BS02 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216075 4d5q:A (1.68) BS03 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216076 4d5q:A (1.68) BS04 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216077 4d5q:A (1.68) BS05 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216078 4d5q:A (1.68) BS06 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216079 4d5v:A (1.62) BS01 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216080 4d5v:A (1.62) BS02 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216081 4d5v:A (1.62) BS03 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216082 4d5v:A (1.62) BS04 XLS 3.2.1.91 GO:0004553 ... P62694 25765184
    216083 4d5v:A (1.62) BS05 XYP 3.2.1.91 GO:0004553 ... P62694 25765184
    216084 4d5v:A (1.62) BS06 CO 3.2.1.91 GO:0004553 ... P62694 25765184
    216085 4d5y:A (9.0) BS01 rna ? GO:0002181 ... G1TT27 25601755
    216086 4d5y:B (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216087 4d5y:C (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216088 4d5y:C (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216089 4d5y:D (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216090 4d5y:D (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216091 4d5y:E (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216092 4d5y:F (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216093 4d5y:F (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    216094 4d5y:G (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216095 4d5y:G (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    216096 4d5y:H (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216097 4d5y:I (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216098 4d5y:I (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216099 4d5y:J (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216100 4d5y:J (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216101 4d5y:L (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216102 4d5y:L (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216103 4d5y:M (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216104 4d5y:N (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216105 4d5y:N (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216106 4d5y:O (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216107 4d5y:P (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216108 4d5y:P (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216109 4d5y:Q (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216110 4d5y:R (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216111 4d5y:S (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216112 4d5y:S (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216113 4d5y:T (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216114 4d5y:T (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216115 4d5y:U (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216116 4d5y:V (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216117 4d5y:W (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216118 4d5y:X (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216119 4d5y:X (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216120 4d5y:Y (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216121 4d5y:Y (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    216122 4d5y:Z (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216123 4d5y:a (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216124 4d5y:b (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216125 4d5y:c (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216126 4d5y:d (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216127 4d5y:e (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216128 4d5y:f (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216129 4d5y:g (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216130 4d5y:h (9.0) BS01 rna N/A GO:0000463 ... N/A 25601755
    216131 4d5y:h (9.0) BS02 rna N/A GO:0000463 ... N/A 25601755
    216132 4d5y:i (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216133 4d5y:j (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216134 4d5y:j (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216135 4d5y:k (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216136 4d5y:l (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216137 4d5y:l (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216138 4d5y:m (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216139 4d5y:o (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216140 4d5y:p (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216141 4d5y:t (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216142 4d5y:u (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216143 4d61:A (9.0) BS01 rna ? GO:0000028 ... G1TLT8 25601755
    216144 4d61:B (9.0) BS01 rna ? GO:0003735 ... G1SS70 25601755
    216145 4d61:C (9.0) BS01 rna ? GO:0003723 ... G1SWM1 25601755
    216146 4d61:C (9.0) BS02 rna ? GO:0003723 ... G1SWM1 25601755
    216147 4d61:D (9.0) BS01 rna 4.2.99.18 GO:0003723 ... G1TNM3 25601755
    216148 4d61:D (9.0) BS02 rna 4.2.99.18 GO:0003723 ... G1TNM3 25601755
    216149 4d61:E (9.0) BS01 rna ? GO:0003723 ... G1TK17 25601755
    216150 4d61:F (9.0) BS01 rna ? GO:0003723 ... G1TFM5 25601755
    216151 4d61:F (9.0) BS02 rna ? GO:0003723 ... G1TFM5 25601755
    216152 4d61:G (9.0) BS01 rna ? GO:0003735 ... G1TM55 25601755
    216153 4d61:H (9.0) BS01 rna ? GO:0003735 ... G1SVB0 25601755
    216154 4d61:I (9.0) BS01 rna ? GO:0003735 ... G1TJW1 25601755
    216155 4d61:J (9.0) BS01 rna ? GO:0003723 ... B7NZS8 25601755
    216156 4d61:K (9.0) BS01 rna ? GO:0003723 ... G1T168 25601755
    216157 4d61:L (9.0) BS01 rna ? GO:0003735 ... G1TRM4 25601755
    216158 4d61:M (9.0) BS01 rna ? GO:0003735 ... G1SFR8 25601755
    216159 4d61:N (9.0) BS01 rna ? GO:0003735 ... G1SP51 25601755
    216160 4d61:O (9.0) BS01 rna ? GO:0003735 ... G1T1F0 25601755
    216161 4d61:P (9.0) BS01 rna ? GO:0000028 ... G1U0Q2 25601755
    216162 4d61:Q (9.0) BS01 rna ? GO:0000462 ... G1SGX4 25601755
    216163 4d61:Q (9.0) BS02 rna ? GO:0000462 ... G1SGX4 25601755
    216164 4d61:R (9.0) BS01 rna ? GO:0003735 ... G1TU13 25601755
    216165 4d61:S (9.0) BS01 rna ? GO:0003676 ... G1TPG3 25601755
    216166 4d61:T (9.0) BS01 rna ? GO:0000028 ... G1TN62 25601755
    216167 4d61:U (9.0) BS01 rna ? GO:0003723 ... G1SIZ2 25601755
    216168 4d61:W (9.0) BS01 rna ? GO:0003735 ... G1TG89 25601755
    216169 4d61:X (9.0) BS01 rna ? GO:0003735 ... G1SZ47 25601755
    216170 4d61:Y (9.0) BS01 rna ? GO:0003735 ... G1TS40 25601755
    216171 4d61:Z (9.0) BS01 rna ? GO:0003735 ... G1TDB3 25601755
    216172 4d61:a (9.0) BS01 rna ? GO:0003729 ... G1TFE8 25601755
    216173 4d61:b (9.0) BS01 rna ? GO:0003735 ... G1TZ76 25601755
    216174 4d61:c (9.0) BS01 rna ? GO:0000028 ... G1TIB4 25601755
    216175 4d61:d (9.0) BS01 rna ? GO:0002181 ... G1U7M4 25601755
    216176 4d61:e (9.0) BS01 rna ? GO:0003735 ... G1T8A2 25601755
    216177 4d61:e (9.0) BS02 rna ? GO:0003735 ... G1T8A2 25601755
    216178 4d61:f (9.0) BS01 rna ? GO:0003735 ... G1SK22 25601755
    216179 4d61:g (9.0) BS01 rna ? GO:0001891 ... G1SJB4 25601755
    216180 4d61:h (9.0) BS01 rna ? GO:0002184 ... P62495 25601755
    216181 4d61:i (9.0) BS01 rna 3.6.5.- GO:0003924 ... P15170 25601755
    216182 4d62:A (2.5) BS01 SIA N/A N/A N/A 26418008 MOAD: Kd=3.64mM
    216183 4d63:A (2.2) BS01 SIA N/A N/A N/A 26418008 MOAD: Kd~7mM
    216184 4d67:A (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216185 4d67:B (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216186 4d67:C (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216187 4d67:C (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216188 4d67:D (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216189 4d67:D (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216190 4d67:E (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216191 4d67:F (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216192 4d67:F (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    216193 4d67:G (9.0) BS01 rna N/A GO:0003723 ... N/A 25601755
    216194 4d67:G (9.0) BS02 rna N/A GO:0003723 ... N/A 25601755
    216195 4d67:H (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216196 4d67:I (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216197 4d67:I (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216198 4d67:J (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755
    216199 4d67:J (9.0) BS02 rna N/A GO:0003735 ... N/A 25601755
    216200 4d67:L (9.0) BS01 rna N/A GO:0003735 ... N/A 25601755

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).