SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    217801 4dqi:A (1.69) BS04 DCP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217802 4dqi:A (1.69) BS05 DCP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217803 4dqi:D (1.69) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217804 4dqi:D (1.69) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217805 4dqi:D (1.69) BS03 MG 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217806 4dqi:D (1.69) BS04 DCP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217807 4dqj:A (1.23) BS01 AES ? N/A Q283U5 23209446
    217808 4dqk:A (2.4) BS01 FAD 1.14.14.1
    1.6.2.4
    GO:0016491 ... P14779 22356131
    217809 4dqk:B (2.4) BS01 FAD 1.14.14.1
    1.6.2.4
    GO:0016491 ... P14779 22356131
    217810 4dql:A (2.15) BS01 FAD 1.14.14.1
    1.6.2.4
    GO:0016491 ... P14779 22356131
    217811 4dql:A (2.15) BS02 NAP 1.14.14.1
    1.6.2.4
    GO:0016491 ... P14779 22356131
    217812 4dql:B (2.15) BS01 FAD 1.14.14.1
    1.6.2.4
    GO:0016491 ... P14779 22356131
    217813 4dql:B (2.15) BS02 NAP 1.14.14.1
    1.6.2.4
    GO:0016491 ... P14779 22356131
    217814 4dqm:A (2.75) BS01 peptide ? GO:0003677 ... P10276 22642567
    217815 4dqm:A (2.75) BS02 LUF ? GO:0003677 ... P10276 22642567
    217816 4dqm:C (2.75) BS01 peptide ? GO:0003677 ... P10276 22642567
    217817 4dqm:C (2.75) BS02 LUF ? GO:0003677 ... P10276 22642567
    217818 4dqo:H (2.438) BS01 MAN N/A N/A N/A 23708607
    217819 4dqo:H (2.438) BS02 SIA N/A N/A N/A 23708607
    217820 4dqo:L (2.438) BS01 MAN N/A N/A N/A 23708607
    217821 4dqo:L (2.438) BS02 SIA N/A N/A N/A 23708607
    217822 4dqp:A (1.74) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217823 4dqp:A (1.74) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217824 4dqp:A (1.74) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217825 4dqp:A (1.74) BS04 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217826 4dqp:D (1.74) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217827 4dqp:D (1.74) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217828 4dqp:D (1.74) BS03 DCT 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217829 4dqq:A (1.595) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217830 4dqq:A (1.595) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217831 4dqq:A (1.595) BS03 CTP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217832 4dqq:D (1.595) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217833 4dqq:D (1.595) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217834 4dqq:D (1.595) BS03 CTP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217835 4dqr:A (1.95) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217836 4dqr:A (1.95) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217837 4dqr:A (1.95) BS03 CTP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217838 4dqr:D (1.95) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217839 4dqr:D (1.95) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217840 4dqr:D (1.95) BS03 CTP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217841 4dqs:A (1.66) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217842 4dqs:A (1.66) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217843 4dqs:A (1.66) BS03 CTP 2.7.7.7 GO:0003676 ... Q5KWC1 22648417
    217844 4dqu:A (2.45) BS01 NAI 1.3.1.9 GO:0004318 ... P9WGR1 22987724
    217845 4dqw:A (2.51) BS01 ATP 1.1.1.205 GO:0000166 ... Q9HXM5 23643948
    217846 4dqw:A (2.51) BS02 ATP 1.1.1.205 GO:0000166 ... Q9HXM5 23643948
    217847 4dqw:B (2.51) BS01 ATP 1.1.1.205 GO:0000166 ... Q9HXM5 23643948
    217848 4dqw:B (2.51) BS02 ATP 1.1.1.205 GO:0000166 ... Q9HXM5 23643948
    217849 4dqy:A (3.25) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 22582261
    217850 4dqy:A (3.25) BS02 ZN 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 22582261
    217851 4dqy:B (3.25) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0008270 ... P09874 22582261
    217852 4dqy:C (3.25) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 22582261
    217853 4dqy:D (3.25) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 22582261
    217854 4dqy:D (3.25) BS02 ZN 2.4.2.-
    2.4.2.30
    GO:0003677 ... P09874 22582261
    217855 4dqy:E (3.25) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0008270 ... P09874 22582261
    217856 4dqy:F (3.25) BS01 dna 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 22582261
    217857 4dr0:A (1.9) BS01 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    217858 4dr0:A (1.9) BS02 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    217859 4dr0:B (1.9) BS01 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    217860 4dr0:B (1.9) BS02 MN 1.17.4.1 GO:0004748 ... P50621 22443445
    217861 4dr1:B (3.6) BS01 rna ? GO:0003735 ... P80371 23322043
    217862 4dr1:B (3.6) BS02 MG ? GO:0003735 ... P80371 23322043
    217863 4dr1:B (3.6) BS03 MG ? GO:0003735 ... P80371 23322043
    217864 4dr1:C (3.6) BS01 rna ? GO:0003676 ... P80372 23322043
    217865 4dr1:C (3.6) BS02 MG ? GO:0003676 ... P80372 23322043
    217866 4dr1:C (3.6) BS03 MG ? GO:0003676 ... P80372 23322043
    217867 4dr1:C (3.6) BS04 MG ? GO:0003676 ... P80372 23322043
    217868 4dr1:D (3.6) BS01 rna ? GO:0003723 ... P80373 23322043
    217869 4dr1:D (3.6) BS02 MG ? GO:0003723 ... P80373 23322043
    217870 4dr1:E (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 23322043
    217871 4dr1:F (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 23322043
    217872 4dr1:G (3.6) BS01 rna ? GO:0000049 ... P17291 23322043
    217873 4dr1:H (3.6) BS01 rna ? GO:0003735 ... P0DOY9 23322043
    217874 4dr1:I (3.6) BS01 rna ? GO:0003723 ... P80374 23322043
    217875 4dr1:J (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 23322043
    217876 4dr1:K (3.6) BS01 rna ? GO:0003735 ... P80376 23322043
    217877 4dr1:L (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 23322043
    217878 4dr1:L (3.6) BS02 MG ? GO:0000049 ... Q5SHN3 23322043
    217879 4dr1:M (3.6) BS01 rna ? GO:0000049 ... P80377 23322043
    217880 4dr1:N (3.6) BS01 rna ? GO:0003735 ... P0DOY6 23322043
    217881 4dr1:N (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 23322043
    217882 4dr1:O (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 23322043
    217883 4dr1:P (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 23322043
    217884 4dr1:Q (3.6) BS01 rna ? GO:0003735 ... P0DOY7 23322043
    217885 4dr1:R (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 23322043
    217886 4dr1:S (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 23322043
    217887 4dr1:T (3.6) BS01 rna ? GO:0003723 ... P80380 23322043
    217888 4dr2:B (3.249) BS01 rna ? GO:0003735 ... P80371 23322043
    217889 4dr2:C (3.249) BS01 rna ? GO:0003676 ... P80372 23322043
    217890 4dr2:D (3.249) BS01 rna ? GO:0003723 ... P80373 23322043
    217891 4dr2:D (3.249) BS02 MG ? GO:0003723 ... P80373 23322043
    217892 4dr2:E (3.249) BS01 rna ? GO:0003723 ... Q5SHQ5 23322043
    217893 4dr2:E (3.249) BS02 MG ? GO:0003723 ... Q5SHQ5 23322043
    217894 4dr2:F (3.249) BS01 rna ? GO:0003735 ... Q5SLP8 23322043
    217895 4dr2:G (3.249) BS01 rna ? GO:0000049 ... P17291 23322043
    217896 4dr2:H (3.249) BS01 rna ? GO:0003735 ... P0DOY9 23322043
    217897 4dr2:I (3.249) BS01 rna ? GO:0003723 ... P80374 23322043
    217898 4dr2:J (3.249) BS01 rna ? GO:0000049 ... Q5SHN7 23322043
    217899 4dr2:K (3.249) BS01 rna ? GO:0003735 ... P80376 23322043
    217900 4dr2:L (3.249) BS01 rna ? GO:0000049 ... Q5SHN3 23322043
    217901 4dr2:M (3.249) BS01 rna ? GO:0000049 ... P80377 23322043
    217902 4dr2:N (3.249) BS01 rna ? GO:0003735 ... P0DOY6 23322043
    217903 4dr2:N (3.249) BS02 ZN ? GO:0003735 ... P0DOY6 23322043
    217904 4dr2:O (3.249) BS01 rna ? GO:0003735 ... Q5SJ76 23322043
    217905 4dr2:P (3.249) BS01 rna ? GO:0003735 ... Q5SJH3 23322043
    217906 4dr2:Q (3.249) BS01 rna ? GO:0003735 ... P0DOY7 23322043
    217907 4dr2:R (3.249) BS01 rna ? GO:0003735 ... Q5SLQ0 23322043
    217908 4dr2:S (3.249) BS01 rna ? GO:0000028 ... Q5SHP2 23322043
    217909 4dr2:T (3.249) BS01 rna ? GO:0003723 ... P80380 23322043
    217910 4dr2:T (3.249) BS02 MG ? GO:0003723 ... P80380 23322043
    217911 4dr3:B (3.348) BS01 rna ? GO:0003735 ... P80371 23322043
    217912 4dr3:B (3.348) BS02 MG ? GO:0003735 ... P80371 23322043
    217913 4dr3:C (3.348) BS01 rna ? GO:0003676 ... P80372 23322043
    217914 4dr3:D (3.348) BS01 rna ? GO:0003723 ... P80373 23322043
    217915 4dr3:D (3.348) BS02 MG ? GO:0003723 ... P80373 23322043
    217916 4dr3:E (3.348) BS01 rna ? GO:0003723 ... Q5SHQ5 23322043
    217917 4dr3:F (3.348) BS01 rna ? GO:0003735 ... Q5SLP8 23322043
    217918 4dr3:G (3.348) BS01 rna ? GO:0000049 ... P17291 23322043
    217919 4dr3:H (3.348) BS01 rna ? GO:0003735 ... P0DOY9 23322043
    217920 4dr3:I (3.348) BS01 rna ? GO:0003723 ... P80374 23322043
    217921 4dr3:J (3.348) BS01 rna ? GO:0000049 ... Q5SHN7 23322043
    217922 4dr3:K (3.348) BS01 rna ? GO:0003735 ... P80376 23322043
    217923 4dr3:L (3.348) BS01 rna ? GO:0000049 ... Q5SHN3 23322043
    217924 4dr3:L (3.348) BS02 SRY ? GO:0000049 ... Q5SHN3 23322043
    217925 4dr3:M (3.348) BS01 rna ? GO:0000049 ... P80377 23322043
    217926 4dr3:N (3.348) BS01 rna ? GO:0003735 ... P0DOY6 23322043
    217927 4dr3:N (3.348) BS02 ZN ? GO:0003735 ... P0DOY6 23322043
    217928 4dr3:O (3.348) BS01 rna ? GO:0003735 ... Q5SJ76 23322043
    217929 4dr3:P (3.348) BS01 rna ? GO:0003735 ... Q5SJH3 23322043
    217930 4dr3:Q (3.348) BS01 rna ? GO:0003735 ... P0DOY7 23322043
    217931 4dr3:Q (3.348) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    217932 4dr3:R (3.348) BS01 rna ? GO:0003735 ... Q5SLQ0 23322043
    217933 4dr3:S (3.348) BS01 rna ? GO:0000028 ... Q5SHP2 23322043
    217934 4dr3:T (3.348) BS01 rna ? GO:0003723 ... P80380 23322043
    217935 4dr3:T (3.348) BS02 MG ? GO:0003723 ... P80380 23322043
    217936 4dr4:B (3.969) BS01 rna ? GO:0003735 ... P80371 23322043
    217937 4dr4:C (3.969) BS01 rna ? GO:0003676 ... P80372 23322043
    217938 4dr4:D (3.969) BS01 rna ? GO:0003723 ... P80373 23322043
    217939 4dr4:D (3.969) BS02 MG ? GO:0003723 ... P80373 23322043
    217940 4dr4:E (3.969) BS01 rna ? GO:0003723 ... Q5SHQ5 23322043
    217941 4dr4:F (3.969) BS01 rna ? GO:0003735 ... Q5SLP8 23322043
    217942 4dr4:G (3.969) BS01 rna ? GO:0000049 ... P17291 23322043
    217943 4dr4:H (3.969) BS01 rna ? GO:0003735 ... P0DOY9 23322043
    217944 4dr4:I (3.969) BS01 rna ? GO:0003723 ... P80374 23322043
    217945 4dr4:J (3.969) BS01 rna ? GO:0000049 ... Q5SHN7 23322043
    217946 4dr4:K (3.969) BS01 rna ? GO:0003735 ... P80376 23322043
    217947 4dr4:K (3.969) BS02 MG ? GO:0003735 ... P80376 23322043
    217948 4dr4:L (3.969) BS01 rna ? GO:0000049 ... Q5SHN3 23322043
    217949 4dr4:M (3.969) BS01 rna ? GO:0000049 ... P80377 23322043
    217950 4dr4:N (3.969) BS01 rna ? GO:0003735 ... P0DOY6 23322043
    217951 4dr4:N (3.969) BS02 ZN ? GO:0003735 ... P0DOY6 23322043
    217952 4dr4:O (3.969) BS01 rna ? GO:0003735 ... Q5SJ76 23322043
    217953 4dr4:P (3.969) BS01 rna ? GO:0003735 ... Q5SJH3 23322043
    217954 4dr4:Q (3.969) BS01 rna ? GO:0003735 ... P0DOY7 23322043
    217955 4dr4:Q (3.969) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    217956 4dr4:R (3.969) BS01 rna ? GO:0003735 ... Q5SLQ0 23322043
    217957 4dr4:S (3.969) BS01 rna ? GO:0000028 ... Q5SHP2 23322043
    217958 4dr4:T (3.969) BS01 rna ? GO:0003723 ... P80380 23322043
    217959 4dr5:B (3.45) BS01 rna ? GO:0003735 ... P80371 23322043
    217960 4dr5:C (3.45) BS01 rna ? GO:0003676 ... P80372 23322043
    217961 4dr5:D (3.45) BS01 rna ? GO:0003723 ... P80373 23322043
    217962 4dr5:D (3.45) BS02 MG ? GO:0003723 ... P80373 23322043
    217963 4dr5:E (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 23322043
    217964 4dr5:F (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 23322043
    217965 4dr5:G (3.45) BS01 rna ? GO:0000049 ... P17291 23322043
    217966 4dr5:H (3.45) BS01 rna ? GO:0003735 ... P0DOY9 23322043
    217967 4dr5:I (3.45) BS01 rna ? GO:0003723 ... P80374 23322043
    217968 4dr5:J (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 23322043
    217969 4dr5:J (3.45) BS02 MG ? GO:0000049 ... Q5SHN7 23322043
    217970 4dr5:K (3.45) BS01 rna ? GO:0003735 ... P80376 23322043
    217971 4dr5:L (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 23322043
    217972 4dr5:L (3.45) BS02 SRY ? GO:0000049 ... Q5SHN3 23322043
    217973 4dr5:M (3.45) BS01 rna ? GO:0000049 ... P80377 23322043
    217974 4dr5:N (3.45) BS01 rna ? GO:0003735 ... P0DOY6 23322043
    217975 4dr5:N (3.45) BS02 ZN ? GO:0003735 ... P0DOY6 23322043
    217976 4dr5:O (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 23322043
    217977 4dr5:P (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 23322043
    217978 4dr5:Q (3.45) BS01 rna ? GO:0003735 ... P0DOY7 23322043
    217979 4dr5:Q (3.45) BS02 MG ? GO:0003735 ... P0DOY7 23322043
    217980 4dr5:R (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 23322043
    217981 4dr5:S (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 23322043
    217982 4dr5:T (3.45) BS01 rna ? GO:0003723 ... P80380 23322043
    217983 4dr6:B (3.3) BS01 rna ? GO:0003735 ... P80371 23322043
    217984 4dr6:C (3.3) BS01 rna ? GO:0003676 ... P80372 23322043
    217985 4dr6:D (3.3) BS01 rna ? GO:0003723 ... P80373 23322043
    217986 4dr6:D (3.3) BS02 MG ? GO:0003723 ... P80373 23322043
    217987 4dr6:E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 23322043
    217988 4dr6:F (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 23322043
    217989 4dr6:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 23322043
    217990 4dr6:G (3.3) BS01 rna ? GO:0000049 ... P17291 23322043
    217991 4dr6:H (3.3) BS01 rna ? GO:0003735 ... P0DOY9 23322043
    217992 4dr6:I (3.3) BS01 rna ? GO:0003723 ... P80374 23322043
    217993 4dr6:J (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 23322043
    217994 4dr6:J (3.3) BS02 MG ? GO:0000049 ... Q5SHN7 23322043
    217995 4dr6:K (3.3) BS01 rna ? GO:0003735 ... P80376 23322043
    217996 4dr6:L (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 23322043
    217997 4dr6:L (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 23322043
    217998 4dr6:L (3.3) BS03 SRY ? GO:0000049 ... Q5SHN3 23322043
    217999 4dr6:M (3.3) BS01 rna ? GO:0000049 ... P80377 23322043
    218000 4dr6:N (3.3) BS01 rna ? GO:0003735 ... P0DOY6 23322043

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).