SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    219801 4e9r:A (1.3) BS01 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219802 4e9r:A (1.3) BS02 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219803 4e9r:A (1.3) BS03 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219804 4e9r:A (1.3) BS04 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219805 4e9s:A (1.06) BS01 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219806 4e9s:A (1.06) BS02 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219807 4e9s:A (1.06) BS03 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219808 4e9s:A (1.06) BS04 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219809 4e9t:A (1.3) BS01 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219810 4e9t:A (1.3) BS02 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219811 4e9t:A (1.3) BS03 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219812 4e9t:A (1.3) BS04 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    219813 4e9u:A (2.1) BS01 RWY 2.5.1.96 GO:0004311 ... A9JQL9 22486710 MOAD: Ki=1.5uM
    BindingDB: Ki=1500nM
    219814 4e9u:A (2.1) BS02 MG 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219815 4e9v:A (1.8) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219816 4e9v:A (1.8) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219817 4e9v:A (1.8) BS03 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219818 4e9v:A (1.8) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219819 4e9v:A (1.8) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219820 4e9v:A (1.8) BS06 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219821 4e9v:A (1.8) BS07 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219822 4e9v:B (1.8) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219823 4e9v:B (1.8) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219824 4e9v:B (1.8) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219825 4e9v:B (1.8) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219826 4e9v:B (1.8) BS05 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219827 4e9v:C (1.8) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219828 4e9v:C (1.8) BS02 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219829 4e9v:C (1.8) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219830 4e9v:C (1.8) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219831 4e9v:C (1.8) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219832 4e9v:C (1.8) BS06 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219833 4e9v:C (1.8) BS07 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219834 4e9w:A (1.45) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219835 4e9w:A (1.45) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219836 4e9w:A (1.45) BS03 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219837 4e9w:A (1.45) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219838 4e9w:A (1.45) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219839 4e9w:A (1.45) BS06 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219840 4e9w:A (1.45) BS07 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219841 4e9w:B (1.45) BS01 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219842 4e9w:B (1.45) BS02 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219843 4e9w:B (1.45) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219844 4e9w:B (1.45) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219845 4e9w:B (1.45) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219846 4e9w:B (1.45) BS06 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219847 4e9w:B (1.45) BS07 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219848 4e9w:B (1.45) BS08 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219849 4e9w:C (1.45) BS01 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219850 4e9w:C (1.45) BS02 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219851 4e9w:C (1.45) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219852 4e9w:C (1.45) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219853 4e9w:C (1.45) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219854 4e9w:C (1.45) BS06 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219855 4e9w:C (1.45) BS07 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219856 4e9w:C (1.45) BS08 O ? GO:0005507 ... A0ACD6B9B7 24598746
    219857 4e9x:A (1.14) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219858 4e9x:A (1.14) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219859 4e9x:A (1.14) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219860 4e9x:A (1.14) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219861 4e9x:A (1.14) BS05 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219862 4e9x:A (1.14) BS06 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219863 4e9x:B (1.14) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219864 4e9x:B (1.14) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219865 4e9x:B (1.14) BS03 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219866 4e9x:B (1.14) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219867 4e9x:B (1.14) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219868 4e9x:B (1.14) BS06 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219869 4e9x:C (1.14) BS01 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219870 4e9x:C (1.14) BS02 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219871 4e9x:C (1.14) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219872 4e9x:C (1.14) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219873 4e9x:C (1.14) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219874 4e9x:C (1.14) BS06 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219875 4e9y:A (1.5) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219876 4e9y:A (1.5) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219877 4e9y:A (1.5) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219878 4e9y:A (1.5) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219879 4e9y:A (1.5) BS05 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219880 4e9y:A (1.5) BS06 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219881 4e9y:B (1.5) BS01 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219882 4e9y:B (1.5) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219883 4e9y:B (1.5) BS03 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219884 4e9y:B (1.5) BS04 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219885 4e9y:B (1.5) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219886 4e9y:B (1.5) BS06 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219887 4e9y:C (1.5) BS01 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219888 4e9y:C (1.5) BS02 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219889 4e9y:C (1.5) BS03 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219890 4e9y:C (1.5) BS04 OXY ? GO:0005507 ... A0ACD6B9B7 24598746
    219891 4e9y:C (1.5) BS05 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219892 4e9y:C (1.5) BS06 CU ? GO:0005507 ... A0ACD6B9B7 24598746
    219893 4e9z:A (2.06) BS01 651 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219894 4ea0:A (2.12) BS01 MG 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219895 4ea0:A (2.12) BS02 MG 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219896 4ea0:A (2.12) BS03 MG 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219897 4ea0:A (2.12) BS04 POP 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219898 4ea0:A (2.12) BS05 651 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219899 4ea0:B (2.12) BS01 MG 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219900 4ea0:B (2.12) BS02 MG 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219901 4ea0:B (2.12) BS03 MG 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219902 4ea0:B (2.12) BS04 POP 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219903 4ea0:B (2.12) BS05 651 2.5.1.96 GO:0004311 ... A9JQL9 22486710
    219904 4ea1:A (2.46) BS01 3RX 2.5.1.96 GO:0004311 ... A9JQL9 22486710 MOAD: Ki=0.36uM
    BindingDB: IC50=100000nM, Ki=360nM
    219905 4ea2:A (2.05) BS01 RWZ 2.5.1.96 GO:0004311 ... A9JQL9 22486710 MOAD: Ki=0.36uM
    219906 4ea3:A (3.013) BS01 0NN ? GO:0001626 ... P0ABE7
    P41146
    22596163
    219907 4ea3:B (3.013) BS01 0NN ? GO:0001626 ... P0ABE7
    P41146
    22596163
    219908 4ea4:A (2.0) BS01 dna 3.2.2.- GO:0003677 ... O95243 22848106
    219909 4ea4:A (2.0) BS02 dna 3.2.2.- GO:0003677 ... O95243 22848106
    219910 4ea5:A (2.14) BS01 dna 3.2.2.- GO:0003677 ... O95243 22848106
    219911 4ea5:A (2.14) BS02 dna 3.2.2.- GO:0003677 ... O95243 22848106
    219912 4ea7:A (1.0) BS01 COA 2.3.1.- N/A O85353 22443398
    219913 4ea7:A (1.0) BS02 JB2 2.3.1.- N/A O85353 22443398
    219914 4ea8:A (1.0) BS01 COA 2.3.1.- N/A O85353 22443398
    219915 4ea8:A (1.0) BS02 JB3 2.3.1.- N/A O85353 22443398
    219916 4ea9:A (0.9) BS01 JBT 2.3.1.- N/A O85353 22443398
    219917 4eaa:A (1.45) BS01 JB2 2.3.1.- N/A O85353 22443398
    219918 4eaa:A (1.45) BS02 COA 2.3.1.- N/A O85353 22443398
    219919 4eab:A (1.35) BS01 JB2 2.3.1.- N/A O85353 22443398
    219920 4eab:A (1.35) BS02 COA 2.3.1.- N/A O85353 22443398
    219921 4eac:A (2.3) BS01 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219922 4eac:B (2.3) BS01 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219923 4eac:C (2.3) BS01 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219924 4eac:D (2.3) BS01 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219925 4ead:A (1.5) BS01 0NP 2.4.2.4 GO:0004645 ... P07650 N/A
    219926 4eag:C (2.701) BS01 ATP ? GO:0004679 ... P80385 22659875
    219927 4eag:C (2.701) BS02 ATP ? GO:0004679 ... P80385 22659875
    219928 4eah:D (3.4) BS01 ATP 3.6.4.- GO:0000287 ... P68135 23222643
    219929 4eah:F (3.4) BS01 ATP 3.6.4.- GO:0000287 ... P68135 23222643
    219930 4eah:G (3.4) BS01 ATP 3.6.4.- GO:0000287 ... P68135 23222643
    219931 4eah:H (3.4) BS01 ATP 3.6.4.- GO:0000287 ... P68135 23222643
    219932 4eai:C (2.285) BS01 AMP ? GO:0004679 ... P80385 22659875
    219933 4eai:C (2.285) BS02 AMP ? GO:0004679 ... P80385 22659875
    219934 4eai:C (2.285) BS03 AMP ? GO:0004679 ... P80385 22659875
    219935 4eaj:C (2.609) BS01 ATP ? GO:0004679 ... P80385 22659875
    219936 4eaj:C (2.609) BS02 ATP ? GO:0004679 ... P80385 22659875
    219937 4eaj:C (2.609) BS03 AMP ? GO:0004679 ... P80385 22659875
    219938 4eak:C (2.5) BS01 ATP ? GO:0004679 ... P80385 22659875
    219939 4eak:C (2.5) BS02 ATP ? GO:0004679 ... P80385 22659875
    219940 4eal:C (2.506) BS01 AMP ? GO:0004679 ... P80385 22659875
    219941 4eal:C (2.506) BS02 AMP ? GO:0004679 ... P80385 22659875
    219942 4ean:A (1.75) BS01 IND 3.2.1.23 GO:0004553 ... P22498 22655749
    219943 4ean:B (1.75) BS01 IND 3.2.1.23 GO:0004553 ... P22498 22655749
    219944 4eaq:A (1.85) BS01 ATM 2.7.4.9 GO:0004798 ... P65248 N/A
    219945 4eaq:B (1.85) BS01 ATM 2.7.4.9 GO:0004798 ... P65248 N/A
    219946 4ear:A (1.7) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 23438750 BindingDB: Ki=7nM
    219947 4ear:A (1.7) BS02 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    219948 4ear:B (1.7) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 23438750 BindingDB: Ki=7nM
    219949 4ear:B (1.7) BS02 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    219950 4ear:C (1.7) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 23438750 BindingDB: Ki=7nM
    219951 4ear:C (1.7) BS02 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    219952 4eaw:A (2.0) BS01 0NQ 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 N/A
    219953 4eaw:B (2.0) BS01 0NQ 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 N/A
    219954 4eax:A (2.3) BS01 S12 ? GO:0005102 ... P01139 22649032
    219955 4eax:B (2.3) BS01 S12 ? GO:0005102 ... P01139 22649032
    219956 4eax:D (2.3) BS01 S12 ? GO:0005102 ... P01139 22649032
    219957 4eay:A (2.35) BS01 CS2 4.2.1.8 GO:0005975 ... P24215 22796868
    219958 4eay:A (2.35) BS02 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219959 4eay:B (2.35) BS01 CS2 4.2.1.8 GO:0005975 ... P24215 22796868
    219960 4eay:B (2.35) BS02 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219961 4eay:C (2.35) BS01 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219962 4eay:D (2.35) BS01 MN 4.2.1.8 GO:0005975 ... P24215 22796868
    219963 4eb3:A (1.9) BS01 SF4 1.17.7.4 GO:0005737 ... P62623 22687151
    219964 4eb3:A (1.9) BS02 0O3 1.17.7.4 GO:0005737 ... P62623 22687151
    219965 4eb3:B (1.9) BS01 SF4 1.17.7.4 GO:0005737 ... P62623 22687151
    219966 4eb3:B (1.9) BS02 0O3 1.17.7.4 GO:0005737 ... P62623 22687151
    219967 4eb4:A (1.74) BS01 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219968 4eb4:A (1.74) BS02 D16 2.1.1.45 GO:0000900 ... P07607 24995339
    219969 4eb4:A (1.74) BS03 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219970 4eb4:B (1.74) BS01 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219971 4eb4:B (1.74) BS02 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219972 4eb4:B (1.74) BS03 D16 2.1.1.45 GO:0000900 ... P07607 24995339
    219973 4eb4:C (1.74) BS01 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219974 4eb4:C (1.74) BS02 D16 2.1.1.45 GO:0000900 ... P07607 24995339
    219975 4eb4:C (1.74) BS03 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219976 4eb4:D (1.74) BS01 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219977 4eb4:D (1.74) BS02 UMP 2.1.1.45 GO:0000900 ... P07607 24995339
    219978 4eb4:D (1.74) BS03 D16 2.1.1.45 GO:0000900 ... P07607 24995339
    219979 4eb5:A (2.53) BS01 PLP 2.8.1.7 GO:0005737 ... O29689 22511353
    219980 4eb5:B (2.53) BS01 PLP 2.8.1.7 GO:0005737 ... O29689 22511353
    219981 4eb5:C (2.53) BS01 FES ? GO:0005506 ... P0DMG2 22511353
    219982 4eb5:D (2.53) BS01 FES ? GO:0005506 ... P0DMG2 22511353
    219983 4eb6:A (3.47) BS01 GTP ? GO:0000226 ... D0VWZ0 22868758
    219984 4eb6:B (3.47) BS01 GDP ? GO:0003924 ... D0VWY9 22868758
    219985 4eb6:B (3.47) BS02 VLB ? GO:0003924 ... D0VWY9 22868758
    219986 4eb6:C (3.47) BS01 GTP ? GO:0000226 ... D0VWZ0 22868758
    219987 4eb6:C (3.47) BS02 VLB ? GO:0000226 ... D0VWZ0 22868758
    219988 4eb6:D (3.47) BS01 GDP ? GO:0003924 ... D0VWY9 22868758
    219989 4eb7:A (2.75) BS01 PLP 2.8.1.7 GO:0005737 ... O29689 22511353
    219990 4eb7:B (2.75) BS01 PLP 2.8.1.7 GO:0005737 ... O29689 22511353
    219991 4eb7:B (2.75) BS02 PLP 2.8.1.7 GO:0005737 ... O29689 22511353
    219992 4eb7:C (2.75) BS01 FES ? GO:0005506 ... P0DMG2 22511353
    219993 4eb7:C (2.75) BS02 FES ? GO:0005506 ... P0DMG2 22511353
    219994 4eb8:A (2.3) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    219995 4eb8:A (2.3) BS02 IM5 2.4.2.1 GO:0000255 ... P00491 23438750 BindingDB: Ki=7nM
    219996 4eb8:B (2.3) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    219997 4eb8:B (2.3) BS02 IM5 2.4.2.1 GO:0000255 ... P00491 23438750 BindingDB: Ki=7nM
    219998 4eb8:C (2.3) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    219999 4eb8:C (2.3) BS02 IM5 2.4.2.1 GO:0000255 ... P00491 23438750 BindingDB: Ki=7nM
    220000 4eb9:A (2.6) BS01 ZN 2.3.2.27 N/A Q13490 23166698

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).