SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    226201 4ger:B (1.59) BS01 ZN 3.4.24.28 GO:0004222 ... P29148 23275160
    226202 4ger:B (1.59) BS02 CA 3.4.24.28 GO:0004222 ... P29148 23275160
    226203 4ger:B (1.59) BS03 CA 3.4.24.28 GO:0004222 ... P29148 23275160
    226204 4ger:B (1.59) BS04 CA 3.4.24.28 GO:0004222 ... P29148 23275160
    226205 4ger:B (1.59) BS05 THR 3.4.24.28 GO:0004222 ... P29148 23275160
    226206 4ger:B (1.59) BS06 LYS 3.4.24.28 GO:0004222 ... P29148 23275160
    226207 4gev:A (1.3) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    226208 4gev:A (1.3) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    226209 4gev:B (1.3) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    226210 4gev:B (1.3) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    226211 4gey:A (2.7) BS01 BGC ? GO:0008643 ... A5VZA8 23066028
    226212 4gey:A (2.7) BS02 C8E ? GO:0008643 ... A5VZA8 23066028
    226213 4gey:A (2.7) BS03 C8E ? GO:0008643 ... A5VZA8 23066028
    226214 4gey:A (2.7) BS04 DMU ? GO:0008643 ... A5VZA8 23066028
    226215 4gey:A (2.7) BS05 DMU ? GO:0008643 ... A5VZA8 23066028
    226216 4gey:A (2.7) BS06 DMU ? GO:0008643 ... A5VZA8 23066028
    226217 4gey:A (2.7) BS07 DMU ? GO:0008643 ... A5VZA8 23066028
    226218 4gez:A (2.5) BS01 FUC 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226219 4gez:A (2.5) BS02 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226220 4gez:B (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226221 4gez:C (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226222 4gez:D (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226223 4gez:E (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226224 4gez:F (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226225 4gez:G (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226226 4gez:H (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226227 4gez:I (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226228 4gez:J (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226229 4gez:K (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226230 4gez:L (2.5) BS01 CA 3.2.1.18 GO:0004308 ... H6QM85 23012478
    226231 4gf0:A (1.75) BS01 GSH N/A N/A N/A N/A
    226232 4gf0:B (1.75) BS01 GSH N/A N/A N/A N/A
    226233 4gf3:A (1.9) BS01 peptide ? GO:0030254 ... Q7BTX0 23519663
    226234 4gf4:A (3.1) BS01 C8E ? GO:0008643 ... A5VZA8 23066028
    226235 4gf4:A (3.1) BS02 C8E ? GO:0008643 ... A5VZA8 23066028
    226236 4gf4:A (3.1) BS03 C8E ? GO:0008643 ... A5VZA8 23066028
    226237 4gf5:A (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226238 4gf5:B (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226239 4gf5:C (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226240 4gf5:D (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226241 4gf5:E (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226242 4gf5:F (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226243 4gf5:G (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226244 4gf5:H (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226245 4gf5:I (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226246 4gf5:J (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226247 4gf5:K (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226248 4gf5:L (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226249 4gf5:M (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226250 4gf5:N (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226251 4gf5:O (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226252 4gf5:P (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226253 4gf5:Q (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226254 4gf5:R (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226255 4gf5:S (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226256 4gf5:T (2.2) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    226257 4gf6:B (1.1) BS01 CA ? GO:0006091 ... P42212 22936654
    226258 4gf6:B (1.1) BS02 CA ? GO:0006091 ... P42212 22936654
    226259 4gf6:B (1.1) BS03 CA ? GO:0006091 ... P42212 22936654
    226260 4gf7:A (1.581) BS01 FAD 1.14.12.4 GO:0004497 ... Q988D3 N/A
    226261 4gf9:C (2.8) BS01 LP5 ? GO:0001818 ... Q9GK12 23326499
    226262 4gf9:D (2.8) BS01 STE ? GO:0001818 ... Q9GK12 23326499
    226263 4gf9:D (2.8) BS02 LP5 ? GO:0001818 ... Q9GK12 23326499
    226264 4gfb:A (2.99) BS01 dna ? GO:0000723 ... P11938 23519416
    226265 4gfb:A (2.99) BS02 dna ? GO:0000723 ... P11938 23519416
    226266 4gfd:A (1.8) BS01 0YB 2.7.4.9 GO:0004798 ... P65248 22908966 MOAD: Ki=330pM
    226267 4gfd:B (1.8) BS01 0YB 2.7.4.9 GO:0004798 ... P65248 22908966 MOAD: Ki=330pM
    226268 4gfg:A (2.35) BS01 0XF 2.7.10.2 GO:0004672 ... P43405 N/A BindingDB: IC50=32nM
    226269 4gfh:A (4.408) BS01 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226270 4gfh:A (4.408) BS02 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226271 4gfh:A (4.408) BS03 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226272 4gfh:A (4.408) BS04 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226273 4gfh:A (4.408) BS05 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226274 4gfh:A (4.408) BS06 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226275 4gfh:A (4.408) BS07 ANP 5.6.2.2 GO:0003677 ... P06786 23022727
    226276 4gfh:F (4.408) BS01 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226277 4gfh:F (4.408) BS02 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226278 4gfh:F (4.408) BS03 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226279 4gfh:F (4.408) BS04 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226280 4gfh:F (4.408) BS05 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226281 4gfh:F (4.408) BS06 dna 5.6.2.2 GO:0003677 ... P06786 23022727
    226282 4gfh:F (4.408) BS07 MG 5.6.2.2 GO:0003677 ... P06786 23022727
    226283 4gfh:F (4.408) BS08 ANP 5.6.2.2 GO:0003677 ... P06786 23022727
    226284 4gfi:A (1.9) BS01 ALA 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226285 4gfi:A (1.9) BS02 GLU 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226286 4gfi:B (1.9) BS01 ALA 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226287 4gfi:B (1.9) BS02 GLU 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226288 4gfi:C (1.9) BS01 ALA 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226289 4gfi:C (1.9) BS02 GLU 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226290 4gfi:D (1.9) BS01 ALA 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226291 4gfi:D (1.9) BS02 GLU 5.1.1.- GO:0016854 ... A9CIT6 N/A
    226292 4gfj:A (2.91) BS01 ZN ? GO:0003677 ... F1SVL0 23125368
    226293 4gfm:A (2.3) BS01 0X2 2.7.10.2 GO:0004672 ... O60674 23867602 MOAD: Ki=0.06uM
    226294 4gfn:A (1.9) BS01 SUY 5.6.2.2 GO:0003677 ... Q839Z1 23352267 MOAD: Ki=5nM
    226295 4gfo:A (2.3) BS01 0X2 2.7.10.2 GO:0004672 ... P29597 23867602 MOAD: Ki=0.24uM
    226296 4gfr:A (2.2) BS01 MN ? GO:0030288 ... Q9KUA3 N/A
    226297 4gfu:A (2.0) BS01 peptide 3.1.3.48 GO:0004725 ... Q99952 N/A
    226298 4gfv:A (2.095) BS01 peptide 3.1.3.48 GO:0004725 ... Q99952 N/A
    226299 4gfv:B (2.095) BS01 peptide 3.1.3.48 GO:0004725 ... Q99952 N/A
    226300 4gfy:A (2.7) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    226301 4gg1:A (1.069) BS01 TZD 4.1.1.7 GO:0000287 ... P20906 23607689
    226302 4gg1:A (1.069) BS02 CA 4.1.1.7 GO:0000287 ... P20906 23607689
    226303 4gg2:B (2.21) BS01 GLU 2.3.2.2
    3.4.19.13
    3.4.19.14
    GO:0006751 ... P19440 24047895
    226304 4gg2:B (2.21) BS02 CL 2.3.2.2
    3.4.19.13
    3.4.19.14
    GO:0006751 ... P19440 24047895
    226305 4gg4:A (2.501) BS01 dna ? N/A Q3ZD72 23022487
    226306 4gg4:A (2.501) BS02 rna ? N/A Q3ZD72 23022487
    226307 4gg5:A (2.423) BS01 0J3 2.7.10.1 GO:0004672 ... P08581 22985853 MOAD: ic50=0.93nM
    BindingDB: IC50=0.930000nM
    226308 4gg6:A (3.2) BS01 peptide ? GO:0006955 ... P01909 23063329
    226309 4gg6:B (3.2) BS01 peptide ? GO:0006955 ... P01920 23063329
    226310 4gg6:C (3.2) BS01 peptide ? GO:0006955 ... P01909 23063329
    226311 4gg6:D (3.2) BS01 peptide ? GO:0006955 ... P01920 23063329
    226312 4gg6:F (3.2) BS01 peptide ? N/A P01850 23063329
    226313 4gg6:H (3.2) BS01 peptide ? N/A P01850 23063329
    226314 4gg7:A (2.27) BS01 0J8 2.7.10.1 GO:0004672 ... P08581 22985853 MOAD: ic50=6.5nM
    BindingDB: IC50=6.5nM
    226315 4gg8:A (3.2) BS01 GLC ? GO:0005886 ... K7N5N2 23063329
    226316 4gg8:E (3.2) BS01 GLC ? GO:0005886 ... K7N5N2 23063329
    226317 4gg9:A (1.48) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 23999303
    226318 4gg9:A (1.48) BS02 0WW 2.4.2.29 GO:0002099 ... P28720 23999303
    226319 4ggb:A (2.0) BS01 CA 5.5.1.27 GO:0000287 ... A9CEQ8 26750482
    226320 4ggb:A (2.0) BS02 CA 5.5.1.27 GO:0000287 ... A9CEQ8 26750482
    226321 4ggb:A (2.0) BS03 CA 5.5.1.27 GO:0000287 ... A9CEQ8 26750482
    226322 4ggd:A (2.435) BS01 peptide ? GO:0010997 ... Q12834 23091007
    226323 4ggd:B (2.435) BS01 peptide ? GO:0010997 ... Q12834 23091007
    226324 4ggf:A (1.6) BS01 CA ? GO:0002523 ... P05109 23431180
    226325 4ggf:A (1.6) BS02 MN ? GO:0002523 ... P05109 23431180
    226326 4ggf:A (1.6) BS03 MN ? GO:0002523 ... P05109 23431180
    226327 4ggf:C (1.6) BS01 MN ? GO:0002523 ... P06702 23431180
    226328 4ggf:C (1.6) BS02 MN ? GO:0002523 ... P06702 23431180
    226329 4ggf:C (1.6) BS03 CA ? GO:0002523 ... P06702 23431180
    226330 4ggf:C (1.6) BS04 CA ? GO:0002523 ... P06702 23431180
    226331 4ggf:K (1.6) BS01 CA ? GO:0002523 ... P05109 23431180
    226332 4ggf:K (1.6) BS02 MN ? GO:0002523 ... P05109 23431180
    226333 4ggf:K (1.6) BS03 MN ? GO:0002523 ... P05109 23431180
    226334 4ggf:L (1.6) BS01 MN ? GO:0002523 ... P06702 23431180
    226335 4ggf:L (1.6) BS02 MN ? GO:0002523 ... P06702 23431180
    226336 4ggf:L (1.6) BS03 CA ? GO:0002523 ... P06702 23431180
    226337 4ggf:L (1.6) BS04 CA ? GO:0002523 ... P06702 23431180
    226338 4ggf:S (1.6) BS01 CA ? GO:0002523 ... P05109 23431180
    226339 4ggf:S (1.6) BS02 MN ? GO:0002523 ... P05109 23431180
    226340 4ggf:S (1.6) BS03 MN ? GO:0002523 ... P05109 23431180
    226341 4ggf:T (1.6) BS01 MN ? GO:0002523 ... P06702 23431180
    226342 4ggf:T (1.6) BS02 MN ? GO:0002523 ... P06702 23431180
    226343 4ggf:T (1.6) BS03 CA ? GO:0002523 ... P06702 23431180
    226344 4ggf:T (1.6) BS04 CA ? GO:0002523 ... P06702 23431180
    226345 4ggf:U (1.6) BS01 CA ? GO:0002523 ... P05109 23431180
    226346 4ggf:U (1.6) BS02 MN ? GO:0002523 ... P05109 23431180
    226347 4ggf:V (1.6) BS01 MN ? GO:0002523 ... P06702 23431180
    226348 4ggf:V (1.6) BS02 CA ? GO:0002523 ... P06702 23431180
    226349 4ggf:V (1.6) BS03 CA ? GO:0002523 ... P06702 23431180
    226350 4ggg:A (1.998) BS01 ZN ? GO:0003700 ... N/A 23353829
    226351 4ggg:B (1.998) BS01 ZN ? GO:0003700 ... N/A 23353829
    226352 4ggh:A (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    226353 4ggh:B (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    226354 4ggh:C (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    226355 4ggh:D (1.9) BS01 MG ? GO:0000287 ... D0X4R4 N/A
    226356 4ggj:A (1.75) BS01 ZN 3.1.4.- GO:0003824 ... Q5SWZ9 23064227
    226357 4ggk:A (2.1) BS01 ZN 3.1.4.- GO:0003824 ... Q5SWZ9 23064227
    226358 4ggk:A (2.1) BS02 WO4 3.1.4.- GO:0003824 ... Q5SWZ9 23064227
    226359 4ggl:A (1.69) BS01 CJC 5.6.2.2 GO:0003677 ... Q839Z1 23352267 MOAD: Ki<1nM
    226360 4ggm:X (2.897) BS01 LP5 3.6.1.54 GO:0042802 ... A0A0H3C8Q1 23042606
    226361 4ggn:A (2.29) BS01 peptide ? GO:0005509 ... A0A384KCF1 23831371
    226362 4ggn:B (2.29) BS01 peptide ? GO:0005509 ... A0A384KCF1 23831371
    226363 4ggn:C (2.29) BS01 peptide ? GO:0005509 ... A0A384KCF1 23831371
    226364 4ggq:A (1.95) BS01 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    24366729
    226365 4ggq:A (1.95) BS02 861 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    24366729
    226366 4ggq:B (1.95) BS01 861 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    24366729
    226367 4ggq:C (1.95) BS01 CA 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    24366729
    226368 4ggq:C (1.95) BS02 861 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    24366729
    226369 4ggq:D (1.95) BS01 861 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    24366729
    226370 4ggv:A (2.331) BS01 HEM 1.14.13.- GO:0004497 ... D9WMR2 23611984
    226371 4ggz:A (1.75) BS01 BTN ? GO:0009374 ... Q89U61 23661323 MOAD: Kd=0.066nM
    226372 4ggz:B (1.75) BS01 BTN ? GO:0009374 ... Q89U61 23661323 MOAD: Kd=0.066nM
    226373 4ggz:C (1.75) BS01 BTN ? GO:0009374 ... Q89U61 23661323 MOAD: Kd=0.066nM
    226374 4ggz:D (1.75) BS01 BTN ? GO:0009374 ... Q89U61 23661323 MOAD: Kd=0.066nM
    226375 4gh0:A (1.35) BS01 EIS ? GO:0005515 ... Q9NZD2 23519669
    226376 4gh1:A (1.45) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 23999303
    226377 4gh1:A (1.45) BS02 0WX 2.4.2.29 GO:0002099 ... P28720 23999303
    226378 4gh2:A (2.03) BS01 HK0 2.7.11.1 GO:0000077 ... O14757 N/A
    226379 4gh3:A (2.06) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 23999303
    226380 4gh3:A (2.06) BS02 0EV 2.4.2.29 GO:0002099 ... P28720 23999303
    226381 4gh5:A (1.6) BS01 NAD 1.1.1.269 GO:0003824 ... A7IQH5 23474457
    226382 4gh5:B (1.6) BS01 NAD 1.1.1.269 GO:0003824 ... A7IQH5 23474457
    226383 4gh5:C (1.6) BS01 NAD 1.1.1.269 GO:0003824 ... A7IQH5 23474457
    226384 4gh5:D (1.6) BS01 NAD 1.1.1.269 GO:0003824 ... A7IQH5 23474457
    226385 4gh6:A (2.7) BS01 LUO 3.1.4.35 GO:0004114 ... O76083 22985069
    226386 4gh6:A (2.7) BS02 ZN 3.1.4.35 GO:0004114 ... O76083 22985069
    226387 4gh6:B (2.7) BS01 LUO 3.1.4.35 GO:0004114 ... O76083 22985069
    226388 4gh6:B (2.7) BS02 LUO 3.1.4.35 GO:0004114 ... O76083 22985069
    226389 4gh6:B (2.7) BS03 ZN 3.1.4.35 GO:0004114 ... O76083 22985069
    226390 4gh6:B (2.7) BS04 MG 3.1.4.35 GO:0004114 ... O76083 22985069
    226391 4gh8:A (1.85) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 23733948 BindingDB: IC50=8.8nM, EC50=1nM
    226392 4gh8:A (1.85) BS02 NDP 1.5.1.3 GO:0004146 ... P0ABQ4 23733948 MOAD: Kd=2.6uM
    226393 4gh8:A (1.85) BS03 CA 1.5.1.3 GO:0004146 ... P0ABQ4 23733948
    226394 4gh8:A (1.85) BS04 CA 1.5.1.3 GO:0004146 ... P0ABQ4 23733948
    226395 4gh8:B (1.85) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 23733948 BindingDB: IC50=8.8nM, EC50=1nM
    226396 4gh8:B (1.85) BS02 NDP 1.5.1.3 GO:0004146 ... P0ABQ4 23733948 MOAD: Kd=2.6uM
    226397 4gh8:B (1.85) BS03 CA 1.5.1.3 GO:0004146 ... P0ABQ4 23733948
    226398 4gha:A (2.5) BS01 rna ? N/A P35259 23028316
    226399 4gha:A (2.5) BS02 rna ? N/A P35259 23028316
    226400 4gha:C (2.5) BS01 rna ? N/A P35259 23028316

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).