SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    226601 4gjj:B (2.38) BS02 MN 5.3.1.14 N/A Q75WH8 23772372
    226602 4gjj:B (2.38) BS03 AFD 5.3.1.14 N/A Q75WH8 23772372
    226603 4gjj:C (2.38) BS01 MN 5.3.1.14 N/A Q75WH8 23772372
    226604 4gjj:C (2.38) BS02 MN 5.3.1.14 N/A Q75WH8 23772372
    226605 4gjj:C (2.38) BS03 AOS 5.3.1.14 N/A Q75WH8 23772372
    226606 4gjj:D (2.38) BS01 MN 5.3.1.14 N/A Q75WH8 23772372
    226607 4gjj:D (2.38) BS02 MN 5.3.1.14 N/A Q75WH8 23772372
    226608 4gjj:D (2.38) BS03 AOS 5.3.1.14 N/A Q75WH8 23772372
    226609 4gjp:A (1.94) BS01 dna ? N/A Q3ZD72 N/A
    226610 4gjp:B (1.94) BS01 dna ? N/A Q3ZD72 N/A
    226611 4gjp:B (1.94) BS02 dna ? N/A Q3ZD72 N/A
    226612 4gjq:A (2.0) BS01 CIS ? GO:0005515 ... Q9NZD2 23519669
    226613 4gjq:B (2.0) BS01 CIS ? GO:0005515 ... Q9NZD2 23519669
    226614 4gjq:B (2.0) BS02 CIS ? GO:0005515 ... Q9NZD2 23519669
    226615 4gjr:A (1.85) BS01 dna ? N/A Q3ZD72 N/A
    226616 4gjr:A (1.85) BS02 dna ? N/A Q3ZD72 N/A
    226617 4gjr:B (1.85) BS01 dna ? N/A Q3ZD72 N/A
    226618 4gjr:B (1.85) BS02 dna ? N/A Q3ZD72 N/A
    226619 4gjs:A (1.85) BS01 0OD ? GO:0005576 ... P22629 23496309
    226620 4gjs:B (1.85) BS01 0OD ? GO:0005576 ... P22629 23496309
    226621 4gjv:A (2.4) BS01 0OD ? GO:0005576 ... P22629 23496309
    226622 4gjw:B (3.0) BS01 ARG ? N/A Q9IK91 N/A
    226623 4gjy:A (1.2492) BS01 CO 1.14.11.73
    3.4.-.-
    N/A Q8N371 22851697
    226624 4gjy:A (1.2492) BS02 OGA 1.14.11.73
    3.4.-.-
    N/A Q8N371 22851697
    226625 4gjz:A (1.0481) BS01 CO 1.14.11.73
    3.4.-.-
    N/A Q8N371 22851697
    226626 4gjz:A (1.0481) BS02 AKG 1.14.11.73
    3.4.-.-
    N/A Q8N371 22851697
    226627 4gk0:A (2.7) BS01 peptide ? GO:0000122 ... Q9UI95 23143872
    226628 4gk0:B (2.7) BS01 peptide ? GO:0000122 ... Q9UI95 23143872
    226629 4gk2:A (2.195) BS01 L66 2.7.10.1 GO:0004672 ... P29320 23253074 BindingDB: IC50=40nM
    226630 4gk3:A (1.898) BS01 L87 2.7.10.1 GO:0004672 ... P29320 23253074
    226631 4gk4:A (2.1) BS01 L90 2.7.10.1 GO:0004672 ... P29320 23253074
    226632 4gk5:A (3.21) BS01 peptide ? GO:0000122 ... Q9UI95 23143872
    226633 4gk5:B (3.21) BS01 peptide ? GO:0000122 ... Q9UI95 23143872
    226634 4gk5:E (3.21) BS01 peptide 2.7.7.- N/A Q9UBZ9 23143872
    226635 4gk7:H (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 22870914
    226636 4gk7:H (2.8) BS02 peptide 3.4.25.1 GO:0004298 ... P25043 22870914
    226637 4gk7:I (2.8) BS01 peptide 3.4.25.1 GO:0005515 ... P25451 22870914
    226638 4gk7:K (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 22870914
    226639 4gk7:K (2.8) BS02 peptide 3.4.25.1 GO:0004298 ... P30656 22870914
    226640 4gk7:L (2.8) BS01 peptide 3.4.25.1 GO:0003674 ... P23724 22870914
    226641 4gk7:N (2.8) BS01 peptide 3.4.25.1 GO:0004175 ... P38624 22870914
    226642 4gk7:N (2.8) BS02 peptide 3.4.25.1 GO:0004175 ... P38624 22870914
    226643 4gk7:V (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 22870914
    226644 4gk7:V (2.8) BS02 peptide 3.4.25.1 GO:0004298 ... P25043 22870914
    226645 4gk7:W (2.8) BS01 peptide 3.4.25.1 GO:0005515 ... P25451 22870914
    226646 4gk7:Y (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 22870914
    226647 4gk7:Y (2.8) BS02 peptide 3.4.25.1 GO:0004298 ... P30656 22870914
    226648 4gk7:Z (2.8) BS01 peptide 3.4.25.1 GO:0003674 ... P23724 22870914
    226649 4gk7:b (2.8) BS01 peptide 3.4.25.1 GO:0004175 ... P38624 22870914
    226650 4gk8:A (1.933) BS01 ZN 3.1.3.15 GO:0000105 ... Q02150 23327428
    226651 4gk8:A (1.933) BS02 ZN 3.1.3.15 GO:0000105 ... Q02150 23327428
    226652 4gk8:A (1.933) BS03 ZN 3.1.3.15 GO:0000105 ... Q02150 23327428
    226653 4gk8:A (1.933) BS04 ZN 3.1.3.15 GO:0000105 ... Q02150 23327428
    226654 4gk8:A (1.933) BS05 GK8 3.1.3.15 GO:0000105 ... Q02150 23327428
    226655 4gk9:A (1.9) BS01 BMA ? N/A R4GRU1 23480609
    226656 4gk9:A (1.9) BS02 MAN ? N/A R4GRU1 23480609
    226657 4gk9:A (1.9) BS03 MAN ? N/A R4GRU1 23480609
    226658 4gk9:A (1.9) BS04 BMA ? N/A R4GRU1 23480609
    226659 4gk9:A (1.9) BS05 MAN ? N/A R4GRU1 23480609
    226660 4gk9:A (1.9) BS06 MAN ? N/A R4GRU1 23480609
    226661 4gk9:A (1.9) BS07 MAN ? N/A R4GRU1 23480609
    226662 4gk9:A (1.9) BS08 BMA ? N/A R4GRU1 23480609
    226663 4gk9:A (1.9) BS09 MAN ? N/A R4GRU1 23480609
    226664 4gk9:A (1.9) BS10 MAN ? N/A R4GRU1 23480609
    226665 4gk9:A (1.9) BS11 BMA ? N/A R4GRU1 23480609
    226666 4gk9:A (1.9) BS12 MAN ? N/A R4GRU1 23480609
    226667 4gk9:A (1.9) BS13 MAN ? N/A R4GRU1 23480609
    226668 4gka:A (2.2) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    226669 4gka:B (2.2) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    226670 4gka:C (2.2) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    226671 4gka:D (2.2) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    226672 4gka:E (2.2) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    226673 4gka:F (2.2) BS01 PO4 2.4.2.1 GO:0000255 ... P00491 23438750
    226674 4gkb:A (1.5) BS01 CA 1.1.1.435 GO:0019317 ... A0A0H3KNE7 N/A
    226675 4gkb:B (1.5) BS01 CA 1.1.1.435 GO:0019317 ... A0A0H3KNE7 N/A
    226676 4gkb:C (1.5) BS01 CA 1.1.1.435 GO:0019317 ... A0A0H3KNE7 N/A
    226677 4gkc:A (1.3) BS01 RET ? GO:0001523 ... P50120 23224553
    226678 4gkc:B (1.3) BS01 RET ? GO:0001523 ... P50120 23224553
    226679 4gkh:A (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226680 4gkh:A (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226681 4gkh:B (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226682 4gkh:B (1.863) BS02 KAN N/A GO:0005524 ... N/A 23758273
    226683 4gkh:B (1.863) BS03 0J9 N/A GO:0005524 ... N/A 23758273
    226684 4gkh:C (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226685 4gkh:C (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226686 4gkh:D (1.863) BS01 0J9 N/A GO:0005524 ... N/A 23758273
    226687 4gkh:D (1.863) BS02 KAN N/A GO:0005524 ... N/A 23758273
    226688 4gkh:E (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226689 4gkh:E (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226690 4gkh:F (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226691 4gkh:F (1.863) BS02 KAN N/A GO:0005524 ... N/A 23758273
    226692 4gkh:F (1.863) BS03 0J9 N/A GO:0005524 ... N/A 23758273
    226693 4gkh:G (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226694 4gkh:G (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226695 4gkh:H (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226696 4gkh:H (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226697 4gkh:I (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226698 4gkh:I (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226699 4gkh:J (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226700 4gkh:J (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226701 4gkh:K (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226702 4gkh:K (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226703 4gkh:L (1.863) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226704 4gkh:L (1.863) BS02 0J9 N/A GO:0005524 ... N/A 23758273
    226705 4gki:A (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226706 4gki:A (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226707 4gki:A (1.88) BS03 KAN N/A GO:0005524 ... N/A 23758273
    226708 4gki:B (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226709 4gki:B (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226710 4gki:C (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226711 4gki:C (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226712 4gki:D (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226713 4gki:D (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226714 4gki:E (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226715 4gki:E (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226716 4gki:F (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226717 4gki:F (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226718 4gki:G (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226719 4gki:G (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226720 4gki:G (1.88) BS03 KAN N/A GO:0005524 ... N/A 23758273
    226721 4gki:H (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226722 4gki:H (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226723 4gki:I (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226724 4gki:I (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226725 4gki:J (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226726 4gki:J (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226727 4gki:K (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226728 4gki:K (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226729 4gki:L (1.88) BS01 KAN N/A GO:0005524 ... N/A 23758273
    226730 4gki:L (1.88) BS02 0JN N/A GO:0005524 ... N/A 23758273
    226731 4gkj:B (3.298) BS01 rna ? GO:0003735 ... P80371 23781103
    226732 4gkj:C (3.298) BS01 rna ? GO:0003676 ... P80372 23781103
    226733 4gkj:D (3.298) BS01 rna ? GO:0003723 ... P80373 23781103
    226734 4gkj:E (3.298) BS01 rna ? GO:0003723 ... Q5SHQ5 23781103
    226735 4gkj:F (3.298) BS01 rna ? GO:0003735 ... Q5SLP8 23781103
    226736 4gkj:G (3.298) BS01 rna ? GO:0000049 ... P17291 23781103
    226737 4gkj:H (3.298) BS01 rna N/A GO:0003735 ... P0DOY9 23781103
    226738 4gkj:I (3.298) BS01 rna ? GO:0003723 ... P80374 23781103
    226739 4gkj:J (3.298) BS01 rna ? GO:0000049 ... Q5SHN7 23781103
    226740 4gkj:K (3.298) BS01 rna ? GO:0003735 ... P80376 23781103
    226741 4gkj:L (3.298) BS01 rna ? GO:0000049 ... Q5SHN3 23781103
    226742 4gkj:M (3.298) BS01 rna ? GO:0000049 ... P80377 23781103
    226743 4gkj:N (3.298) BS01 rna N/A GO:0003735 ... P0DOY6 23781103
    226744 4gkj:N (3.298) BS02 ZN N/A GO:0003735 ... P0DOY6 23781103
    226745 4gkj:O (3.298) BS01 rna ? GO:0003735 ... Q5SJ76 23781103
    226746 4gkj:P (3.298) BS01 rna ? GO:0003735 ... Q5SJH3 23781103
    226747 4gkj:Q (3.298) BS01 rna N/A GO:0003735 ... P0DOY7 23781103
    226748 4gkj:R (3.298) BS01 rna ? GO:0003735 ... Q5SLQ0 23781103
    226749 4gkj:S (3.298) BS01 rna ? GO:0003723 ... Q5SHP2 23781103
    226750 4gkj:T (3.298) BS01 rna ? GO:0003723 ... P80380 23781103
    226751 4gkk:B (3.2) BS01 rna ? GO:0003735 ... P80371 23781103
    226752 4gkk:C (3.2) BS01 rna ? GO:0003676 ... P80372 23781103
    226753 4gkk:D (3.2) BS01 rna ? GO:0003723 ... P80373 23781103
    226754 4gkk:E (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 23781103
    226755 4gkk:F (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 23781103
    226756 4gkk:G (3.2) BS01 rna ? GO:0000049 ... P17291 23781103
    226757 4gkk:H (3.2) BS01 rna N/A GO:0003735 ... P0DOY9 23781103
    226758 4gkk:I (3.2) BS01 rna ? GO:0003723 ... P80374 23781103
    226759 4gkk:J (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 23781103
    226760 4gkk:K (3.2) BS01 rna ? GO:0003735 ... P80376 23781103
    226761 4gkk:L (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 23781103
    226762 4gkk:M (3.2) BS01 rna ? GO:0000049 ... P80377 23781103
    226763 4gkk:N (3.2) BS01 rna N/A GO:0003735 ... P0DOY6 23781103
    226764 4gkk:N (3.2) BS02 ZN N/A GO:0003735 ... P0DOY6 23781103
    226765 4gkk:O (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 23781103
    226766 4gkk:P (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 23781103
    226767 4gkk:Q (3.2) BS01 rna N/A GO:0003735 ... P0DOY7 23781103
    226768 4gkk:R (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 23781103
    226769 4gkk:S (3.2) BS01 rna ? GO:0003723 ... Q5SHP2 23781103
    226770 4gkk:T (3.2) BS01 rna ? GO:0003723 ... P80380 23781103
    226771 4gkm:A (1.6683) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    226772 4gkm:A (1.6683) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    226773 4gkm:A (1.6683) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    226774 4gkm:A (1.6683) BS04 683 2.4.2.18 GO:0000162 ... P9WFX5 24623674 MOAD: Ki=6.8uM
    226775 4gkm:B (1.6683) BS01 PRP 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    226776 4gkm:B (1.6683) BS02 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    226777 4gkm:B (1.6683) BS03 MG 2.4.2.18 GO:0000162 ... P9WFX5 24623674
    226778 4gkm:B (1.6683) BS04 683 2.4.2.18 GO:0000162 ... P9WFX5 24623674 MOAD: Ki=6.8uM
    226779 4gkn:A (2.753) BS01 peptide ? N/A P04439 22952231
    226780 4gkn:D (2.753) BS01 peptide ? N/A P04439 22952231
    226781 4gko:C (3.3) BS01 MAN ? N/A P01854 23775083
    226782 4gko:C (3.3) BS02 MAN ? N/A P01854 23775083
    226783 4gko:G (3.3) BS01 CA ? N/A P06734 23775083
    226784 4gko:H (3.3) BS01 CA ? N/A P06734 23775083
    226785 4gko:I (3.3) BS01 CA ? N/A P06734 23775083
    226786 4gko:J (3.3) BS01 CA ? N/A P06734 23775083
    226787 4gko:K (3.3) BS01 CA ? N/A P06734 23775083
    226788 4gko:L (3.3) BS01 CA ? N/A P06734 23775083
    226789 4gkr:A (2.69) BS01 ADP ? GO:0003777 ... Q6FVW6 23043140
    226790 4gkr:B (2.69) BS01 ADP ? GO:0003777 ... Q6FVW6 23043140
    226791 4gks:A (2.346) BS01 peptide ? N/A P04439 22952231
    226792 4gks:D (2.346) BS01 peptide ? N/A P04439 22952231
    226793 4gkt:A (1.53) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 23999303
    226794 4gkt:A (1.53) BS02 0O1 2.4.2.29 GO:0002099 ... P28720 23999303
    226795 4gkv:A (2.008) BS01 NAD 1.1.1.1 GO:0004022 ... P39451 23832197
    226796 4gkv:A (2.008) BS02 ZN 1.1.1.1 GO:0004022 ... P39451 23832197
    226797 4gkv:A (2.008) BS03 ZN 1.1.1.1 GO:0004022 ... P39451 23832197
    226798 4gkv:B (2.008) BS01 peptide 1.1.1.1 GO:0004022 ... P39451 23832197
    226799 4gkv:B (2.008) BS02 NAD 1.1.1.1 GO:0004022 ... P39451 23832197
    226800 4gkv:B (2.008) BS03 ZN 1.1.1.1 GO:0004022 ... P39451 23832197

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).