SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    227801 4gwn:A (3.0) BS01 FUC 3.4.24.63 GO:0004222 ... Q16820 22988105
    227802 4gwn:A (3.0) BS02 MAN 3.4.24.63 GO:0004222 ... Q16820 22988105
    227803 4gwq:B (4.5) BS01 peptide ? GO:0000979 ... P32569 23071300
    227804 4gwq:G (4.5) BS01 peptide ? GO:0003712 ... P38782 23071300
    227805 4gws:A (2.75) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227806 4gws:A (2.75) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227807 4gws:A (2.75) BS03 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227808 4gws:B (2.75) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227809 4gws:B (2.75) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227810 4gws:B (2.75) BS03 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227811 4gwu:A (3.0) BS01 FDP 3.1.3.11 GO:0000122 ... P00636 N/A
    227812 4gwu:A (3.0) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227813 4gwv:A (3.05) BS01 FLC 5.2.1.8 N/A Q13526 24311591
    227814 4gww:A (3.2) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227815 4gww:A (3.2) BS02 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227816 4gww:A (3.2) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227817 4gww:A (3.2) BS04 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227818 4gwx:A (2.35) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227819 4gwx:A (2.35) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227820 4gwx:A (2.35) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227821 4gwx:A (2.35) BS04 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227822 4gwy:A (3.0) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227823 4gwy:A (3.0) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227824 4gwy:A (3.0) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227825 4gwy:A (3.0) BS04 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227826 4gwy:A (3.0) BS05 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227827 4gwz:A (2.6) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227828 4gwz:A (2.6) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227829 4gwz:A (2.6) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227830 4gwz:A (2.6) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227831 4gwz:B (2.6) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227832 4gwz:B (2.6) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227833 4gwz:B (2.6) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227834 4gwz:B (2.6) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227835 4gx0:A (2.601) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227836 4gx0:A (2.601) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227837 4gx0:B (2.601) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227838 4gx0:B (2.601) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227839 4gx0:B (2.601) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227840 4gx0:B (2.601) BS04 GLC ? GO:0005267 ... Q74FS9 23240087
    227841 4gx0:C (2.601) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227842 4gx0:C (2.601) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227843 4gx0:C (2.601) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227844 4gx0:D (2.601) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227845 4gx0:D (2.601) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227846 4gx1:A (2.8) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227847 4gx1:A (2.8) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227848 4gx1:A (2.8) BS03 ADP ? GO:0005267 ... Q74FS9 23240087
    227849 4gx1:B (2.8) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227850 4gx1:B (2.8) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227851 4gx1:B (2.8) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227852 4gx1:B (2.8) BS04 ADP ? GO:0005267 ... Q74FS9 23240087
    227853 4gx1:C (2.8) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227854 4gx1:C (2.8) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227855 4gx1:C (2.8) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227856 4gx1:C (2.8) BS04 ADP ? GO:0005267 ... Q74FS9 23240087
    227857 4gx1:C (2.8) BS05 GLC ? GO:0005267 ... Q74FS9 23240087
    227858 4gx1:D (2.8) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227859 4gx1:D (2.8) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227860 4gx1:D (2.8) BS03 ADP ? GO:0005267 ... Q74FS9 23240087
    227861 4gx2:A (3.2) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227862 4gx2:A (3.2) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227863 4gx2:A (3.2) BS03 NAD ? GO:0005267 ... Q74FS9 23240087
    227864 4gx2:B (3.2) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227865 4gx2:B (3.2) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227866 4gx2:B (3.2) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227867 4gx2:B (3.2) BS04 NAD ? GO:0005267 ... Q74FS9 23240087
    227868 4gx2:C (3.2) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227869 4gx2:C (3.2) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227870 4gx2:C (3.2) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227871 4gx2:C (3.2) BS04 NAD ? GO:0005267 ... Q74FS9 23240087
    227872 4gx2:D (3.2) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227873 4gx2:D (3.2) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227874 4gx2:D (3.2) BS03 NAD ? GO:0005267 ... Q74FS9 23240087
    227875 4gx3:A (2.25) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227876 4gx3:A (2.25) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227877 4gx3:A (2.25) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227878 4gx3:B (2.25) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227879 4gx3:B (2.25) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227880 4gx3:B (2.25) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227881 4gx4:A (2.5) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227882 4gx4:A (2.5) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227883 4gx4:A (2.5) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227884 4gx4:A (2.5) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227885 4gx4:B (2.5) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227886 4gx4:B (2.5) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227887 4gx4:B (2.5) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227888 4gx4:B (2.5) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227889 4gx5:A (3.7) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227890 4gx5:A (3.7) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227891 4gx5:B (3.7) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227892 4gx5:B (3.7) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227893 4gx5:B (3.7) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227894 4gx5:C (3.7) BS01 ZN ? GO:0005267 ... Q74FS9 23240087
    227895 4gx5:C (3.7) BS02 CA ? GO:0005267 ... Q74FS9 23240087
    227896 4gx5:C (3.7) BS03 CA ? GO:0005267 ... Q74FS9 23240087
    227897 4gx5:D (3.7) BS01 CA ? GO:0005267 ... Q74FS9 23240087
    227898 4gx5:D (3.7) BS02 ZN ? GO:0005267 ... Q74FS9 23240087
    227899 4gx6:A (2.5) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227900 4gx6:A (2.5) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227901 4gx6:A (2.5) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227902 4gx6:A (2.5) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227903 4gx6:B (2.5) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 N/A
    227904 4gx6:B (2.5) BS02 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227905 4gx6:B (2.5) BS03 MG 3.1.3.11 GO:0000122 ... P00636 N/A
    227906 4gx6:B (2.5) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 N/A
    227907 4gx7:A (2.85) BS01 MMA ? N/A P09545 23274141
    227908 4gx7:B (2.85) BS01 MMA ? N/A P09545 23274141
    227909 4gx7:C (2.85) BS01 MMA ? N/A P09545 23274141
    227910 4gx7:D (2.85) BS01 MMA ? N/A P09545 23274141
    227911 4gx7:D (2.85) BS02 MMA ? N/A P09545 23274141
    227912 4gx7:E (2.85) BS01 MMA ? N/A P09545 23274141
    227913 4gx7:F (2.85) BS01 MMA ? N/A P09545 23274141
    227914 4gxb:A (1.8) BS01 peptide ? GO:0007165 ... Q15036 23382219
    227915 4gxd:A (2.1) BS01 0SG ? GO:0005515 ... Q9NZD2 23519669
    227916 4gxe:B (3.0) BS01 URE ? GO:0015979 ... Q71RW8 23201474
    227917 4gxe:B (3.0) BS02 URE ? GO:0015979 ... Q71RW8 23201474
    227918 4gxf:A (2.734) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    227919 4gxf:A (2.734) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    227920 4gxf:A (2.734) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    227921 4gxf:A (2.734) BS04 CU ? GO:0005507 ... Q9XAL8 23094962
    227922 4gxf:A (2.734) BS05 O ? GO:0005507 ... Q9XAL8 23094962
    227923 4gxf:B (2.734) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    227924 4gxf:B (2.734) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    227925 4gxf:B (2.734) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    227926 4gxf:B (2.734) BS04 O ? GO:0005507 ... Q9XAL8 23094962
    227927 4gxf:C (2.734) BS01 O ? GO:0005507 ... Q9XAL8 23094962
    227928 4gxf:C (2.734) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    227929 4gxf:C (2.734) BS03 O ? GO:0005507 ... Q9XAL8 23094962
    227930 4gxf:C (2.734) BS04 CU ? GO:0005507 ... Q9XAL8 23094962
    227931 4gxf:C (2.734) BS05 CU ? GO:0005507 ... Q9XAL8 23094962
    227932 4gxf:C (2.734) BS06 CU ? GO:0005507 ... Q9XAL8 23094962
    227933 4gxg:A (2.4) BS01 EIS ? GO:0005515 ... Q9NZD2 23519669
    227934 4gxg:A (2.4) BS02 EIS ? GO:0005515 ... Q9NZD2 23519669
    227935 4gxg:B (2.4) BS01 EIS ? GO:0005515 ... Q9NZD2 23519669
    227936 4gxg:B (2.4) BS02 EIS ? GO:0005515 ... Q9NZD2 23519669
    227937 4gxg:D (2.4) BS01 EIS ? GO:0005515 ... Q9NZD2 23519669
    227938 4gxg:D (2.4) BS02 EIS ? GO:0005515 ... Q9NZD2 23519669
    227939 4gxg:E (2.4) BS01 EIS ? GO:0005515 ... Q9NZD2 23519669
    227940 4gxg:E (2.4) BS02 EIS ? GO:0005515 ... Q9NZD2 23519669
    227941 4gxi:A (1.949) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227942 4gxi:A (1.949) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227943 4gxi:A (1.949) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227944 4gxj:A (2.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227945 4gxj:A (2.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227946 4gxj:A (2.2) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227947 4gxj:A (2.2) BS04 6CF 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227948 4gxj:A (2.2) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227949 4gxj:A (2.2) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227950 4gxk:A (1.998) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227951 4gxk:A (1.998) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227952 4gxk:A (1.998) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227953 4gxk:A (1.998) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227954 4gxk:A (1.998) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011
    227955 4gxk:A (1.998) BS06 F2A 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 23267011 BindingDB: Ki=5000nM
    227956 4gxl:A (2.023) BS01 peptide ? GO:0030246 ... O00214 23386746
    227957 4gxm:A (1.362) BS01 FMN 1.6.99.1 GO:0003959 ... Q02899 N/A
    227958 4gxm:A (1.362) BS02 0WV 1.6.99.1 GO:0003959 ... Q02899 N/A
    227959 4gxn:A (2.2) BS01 CA 3.1.1.3 GO:0004806 ... B4EVM3 23300806
    227960 4gxq:A (2.0) BS01 ATP 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227961 4gxq:A (2.0) BS02 CO3 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227962 4gxq:B (2.0) BS01 ATP 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227963 4gxq:B (2.0) BS02 CO3 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227964 4gxq:C (2.0) BS01 ATP 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227965 4gxq:C (2.0) BS02 CO3 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227966 4gxr:A (2.0) BS01 ATP 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227967 4gxr:A (2.0) BS02 CO3 6.2.1.-
    6.2.1.25
    N/A Q13WK3
    Q6ND88
    23076154
    227968 4gxs:B (1.9634) BS01 0YS ? GO:0015276 ... P19491 23076153
    227969 4gxs:B (1.9634) BS02 ZN ? GO:0015276 ... P19491 23076153
    227970 4gxs:D (1.9634) BS01 0YS ? GO:0015276 ... P19491 23076153
    227971 4gxs:D (1.9634) BS02 ZN ? GO:0015276 ... P19491 23076153
    227972 4gxs:D (1.9634) BS03 ZN ? GO:0015276 ... P19491 23076153
    227973 4gxw:A (1.3) BS01 ZN 3.5.4.4 GO:0000034 ... Q0B6Q2 N/A
    227974 4gxw:B (1.3) BS01 ZN 3.5.4.4 GO:0000034 ... Q0B6Q2 N/A
    227975 4gxx:A (1.799) BS01 MAN ? GO:0019031 ... Q9WFX3 23236279
    227976 4gy0:A (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227977 4gy0:A (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227978 4gy0:A (1.85) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227979 4gy0:B (1.85) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227980 4gy0:B (1.85) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227981 4gy0:B (1.85) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227982 4gy1:A (1.5) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227983 4gy1:A (1.5) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227984 4gy1:A (1.5) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227985 4gy1:B (1.5) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227986 4gy1:B (1.5) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227987 4gy1:B (1.5) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 23212386
    227988 4gy2:B (2.71) BS01 ATP 3.6.4.- GO:0000287 ... P68135 23382240
    227989 4gy2:B (2.71) BS02 LAR 3.6.4.- GO:0000287 ... P68135 23382240
    227990 4gy4:A (2.67) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    227991 4gy4:A (2.67) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    227992 4gy4:A (2.67) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    227993 4gy4:A (2.67) BS04 O ? GO:0005507 ... Q9XAL8 23094962
    227994 4gy4:B (2.67) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    227995 4gy4:B (2.67) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    227996 4gy4:B (2.67) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    227997 4gy4:B (2.67) BS04 CU ? GO:0005507 ... Q9XAL8 23094962
    227998 4gy4:B (2.67) BS05 O ? GO:0005507 ... Q9XAL8 23094962
    227999 4gy4:C (2.67) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    228000 4gy4:C (2.67) BS02 O ? GO:0005507 ... Q9XAL8 23094962

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).