SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    230401 4hr2:A (1.95) BS01 ADP 2.7.4.6 GO:0004550 ... Q2SWE7 N/A
    230402 4hr2:B (1.95) BS01 ADP 2.7.4.6 GO:0004550 ... Q2SWE7 N/A
    230403 4hr3:A (1.8) BS01 FAD ? GO:0003995 ... B1MFF5 25613812
    230404 4hr4:A (1.901) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 24101498
    230405 4hr4:A (1.901) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 24101498
    230406 4hr6:C (2.25) BS01 AMG ? N/A U3KRF8 23897472
    230407 4hr6:C (2.25) BS02 AMG ? N/A U3KRF8 23897472
    230408 4hra:A (3.15) BS01 EP6 2.1.1.360 GO:0031151 ... Q8TEK3 23801631 BindingDB: Ki=0.080000nM, IC50=<0.100000nM
    230409 4hrc:H (2.8) BS01 OV2 3.4.25.1 GO:0004298 ... P25043 24930969
    230410 4hrc:K (2.8) BS01 OV2 3.4.25.1 GO:0004298 ... P30656 24930969
    230411 4hrc:L (2.8) BS01 OV2 3.4.25.1 GO:0003674 ... P23724 24930969
    230412 4hrc:N (2.8) BS01 OV2 3.4.25.1 GO:0004175 ... P38624 24930969
    230413 4hrc:V (2.8) BS01 OV2 3.4.25.1 GO:0004298 ... P25043 24930969
    230414 4hrc:V (2.8) BS02 OV2 3.4.25.1 GO:0004298 ... P25043 24930969
    230415 4hrc:W (2.8) BS01 OV2 3.4.25.1 GO:0005515 ... P25451 24930969
    230416 4hrc:Y (2.8) BS01 OV2 3.4.25.1 GO:0004298 ... P30656 24930969
    230417 4hrc:b (2.8) BS01 OV2 3.4.25.1 GO:0004175 ... P38624 24930969
    230418 4hrd:H (2.8) BS01 OV1 3.4.25.1 GO:0004298 ... P25043 24930969
    230419 4hrd:I (2.8) BS01 OV1 3.4.25.1 GO:0005515 ... P25451 24930969
    230420 4hrd:K (2.8) BS01 OV1 3.4.25.1 GO:0004298 ... P30656 24930969
    230421 4hrd:N (2.8) BS01 OV1 3.4.25.1 GO:0004175 ... P38624 24930969
    230422 4hrd:V (2.8) BS01 OV1 3.4.25.1 GO:0004298 ... P25043 24930969
    230423 4hrd:Y (2.8) BS01 OV1 3.4.25.1 GO:0004298 ... P30656 24930969
    230424 4hrd:b (2.8) BS01 OV1 3.4.25.1 GO:0004175 ... P38624 24930969
    230425 4hre:A (2.7852) BS01 peptide ? GO:0001525 ... P07356 23415230
    230426 4hre:B (2.7852) BS01 peptide ? GO:0001525 ... P07356 23415230
    230427 4hre:C (2.7852) BS01 peptide ? GO:0001525 ... P07356 23415230
    230428 4hre:D (2.7852) BS01 peptide ? GO:0001525 ... P07356 23415230
    230429 4hre:E (2.7852) BS01 peptide ? GO:0001765 ... P60903 23415230
    230430 4hre:F (2.7852) BS01 peptide ? GO:0001765 ... P60903 23415230
    230431 4hre:I (2.7852) BS01 peptide ? GO:0001765 ... P60903 23415230
    230432 4hre:J (2.7852) BS01 peptide ? GO:0001765 ... P60903 23415230
    230433 4hrg:A (2.0001) BS01 peptide ? GO:0001765 ... P60903 23415230
    230434 4hrg:B (2.0001) BS01 peptide ? GO:0001765 ... P60903 23415230
    230435 4hrh:A (3.001) BS01 peptide ? GO:0001765 ... P07355
    P60903
    23415230
    230436 4hrh:B (3.001) BS01 peptide ? GO:0001765 ... P07355
    P60903
    23415230
    230437 4hri:A (2.954) BS01 dna 3.4.21.- GO:0003677 ... P27709 N/A
    230438 4hri:A (2.954) BS02 dna 3.4.21.- GO:0003677 ... P27709 N/A
    230439 4hri:B (2.954) BS01 dna 3.4.21.- GO:0003677 ... P27709 N/A
    230440 4hri:B (2.954) BS02 dna 3.4.21.- GO:0003677 ... P27709 N/A
    230441 4hro:A (1.15) BS01 CA ? GO:0006777 ... D4GUF6 N/A
    230442 4hro:B (1.15) BS01 CA ? GO:0006777 ... D4GUF6 N/A
    230443 4hro:B (1.15) BS02 CA ? GO:0006777 ... D4GUF6 N/A
    230444 4hrq:A (1.9) BS01 AZG ? GO:0008270 ... Q82Y41 23557066
    230445 4hrq:A (1.9) BS02 ZN ? GO:0008270 ... Q82Y41 23557066
    230446 4hrq:B (1.9) BS01 AZG ? GO:0008270 ... Q82Y41 23557066
    230447 4hrq:B (1.9) BS02 ZN ? GO:0008270 ... Q82Y41 23557066
    230448 4hrr:A (1.25) BS01 HEM ? GO:0019825 ... P14821 23458680
    230449 4hrr:A (1.25) BS02 HEM ? GO:0019825 ... P14821 23458680
    230450 4hrr:B (1.25) BS01 HEM ? GO:0019825 ... P14822 23458680
    230451 4hrr:B (1.25) BS02 HEM ? GO:0019825 ... P14822 23458680
    230452 4hrr:C (1.25) BS01 HEM ? GO:0019825 ... P14821 23458680
    230453 4hrr:D (1.25) BS01 HEM ? GO:0019825 ... P14822 23458680
    230454 4hrr:D (1.25) BS02 HEM ? GO:0019825 ... P14822 23458680
    230455 4hrr:E (1.25) BS01 HEM ? GO:0019825 ... P14821 23458680
    230456 4hrr:E (1.25) BS02 HEM ? GO:0019825 ... P14821 23458680
    230457 4hrr:F (1.25) BS01 HEM ? GO:0019825 ... P14822 23458680
    230458 4hrr:G (1.25) BS01 HEM ? GO:0019825 ... P14821 23458680
    230459 4hrr:G (1.25) BS02 HEM ? GO:0019825 ... P14821 23458680
    230460 4hrr:H (1.25) BS01 HEM ? GO:0019825 ... P14822 23458680
    230461 4hrr:H (1.25) BS02 HEM ? GO:0019825 ... P14822 23458680
    230462 4hrt:A (1.46) BS01 HEM ? GO:0019825 ... P14821 23458680
    230463 4hrt:A (1.46) BS02 HEM ? GO:0019825 ... P14821 23458680
    230464 4hrt:B (1.46) BS01 HEM ? GO:0019825 ... P14822 23458680
    230465 4hrt:B (1.46) BS02 HEM ? GO:0019825 ... P14822 23458680
    230466 4hrt:C (1.46) BS01 HEM ? GO:0019825 ... P14821 23458680
    230467 4hrt:C (1.46) BS02 HEM ? GO:0019825 ... P14821 23458680
    230468 4hrt:D (1.46) BS01 HEM ? GO:0019825 ... P14822 23458680
    230469 4hrt:D (1.46) BS02 HEM ? GO:0019825 ... P14822 23458680
    230470 4hrt:E (1.46) BS01 HEM ? GO:0019825 ... P14821 23458680
    230471 4hrt:E (1.46) BS02 HEM ? GO:0019825 ... P14821 23458680
    230472 4hrt:F (1.46) BS01 HEM ? GO:0019825 ... P14822 23458680
    230473 4hrt:F (1.46) BS02 HEM ? GO:0019825 ... P14822 23458680
    230474 4hrt:G (1.46) BS01 HEM ? GO:0019825 ... P14821 23458680
    230475 4hrt:G (1.46) BS02 HEM ? GO:0019825 ... P14821 23458680
    230476 4hrt:H (1.46) BS01 HEM ? GO:0019825 ... P14822 23458680
    230477 4hrt:H (1.46) BS02 HEM ? GO:0019825 ... P14822 23458680
    230478 4hrw:A (2.43) BS01 ZN ? N/A Q82Y41 23557066
    230479 4hrw:B (2.43) BS01 ZN ? N/A Q82Y41 23557066
    230480 4hrw:B (2.43) BS02 AZG ? N/A Q82Y41 23557066
    230481 4hs3:A (2.1) BS01 peptide ? N/A P01901 24806963
    230482 4hs4:B (2.1) BS01 FMN ? GO:0005829 ... D5QFC5 N/A
    230483 4hs4:C (2.1) BS01 FMN ? GO:0005829 ... D5QFC5 N/A
    230484 4hs4:D (2.1) BS01 FMN ? GO:0005829 ... D5QFC5 N/A
    230485 4hs4:G (2.1) BS01 FMN ? GO:0005829 ... D5QFC5 N/A
    230486 4hs4:H (2.1) BS01 FMN ? GO:0005829 ... D5QFC5 N/A
    230487 4hs6:A (1.53) BS01 peptide N/A N/A N/A 23458406
    230488 4hs6:B (1.53) BS01 peptide N/A N/A N/A 23458406
    230489 4hs6:H (1.53) BS01 peptide N/A N/A N/A 23458406
    230490 4hs6:L (1.53) BS01 peptide N/A N/A N/A 23458406
    230491 4hs8:H (2.6) BS01 peptide N/A N/A N/A 23458406
    230492 4hs8:L (2.6) BS01 peptide N/A N/A N/A 23458406
    230493 4hs9:A (1.8) BS01 CA 3.1.1.3 GO:0004806 ... B4EVM3 23648063
    230494 4hsa:C (3.15) BS01 FUC ? GO:0030368 ... Q96F46 23695682
    230495 4hsb:A (1.9) BS01 dna 3.2.2.21 GO:0000725 ... O94468 23273506
    230496 4hsb:A (1.9) BS02 dna 3.2.2.21 GO:0000725 ... O94468 23273506
    230497 4hse:A (2.2) BS01 ADP ? GO:0005524 ... Q9RA63 23341453 MOAD: Kd=13.7uM
    230498 4hse:A (2.2) BS02 CL ? GO:0005524 ... Q9RA63 23341453
    230499 4hsf:A (1.82) BS01 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    230500 4hsf:A (1.82) BS02 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    230501 4hsg:A (2.3) BS01 KTD 2.1.1.319 GO:0016274 ... O60678 23445220
    230502 4hsh:A (1.56) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 23704982
    230503 4hsh:A (1.56) BS02 QEI 2.4.2.29 GO:0002099 ... P28720 23704982
    230504 4hsi:C (3.101) BS01 MRY ? N/A P06437 23500487
    230505 4hsj:A (1.883) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 25918158
    230506 4hsj:A (1.883) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 25918158
    230507 4hsj:A (1.883) BS03 6PC 1.13.11.6 GO:0000334 ... Q1LCS4 25918158
    230508 4hsl:A (2.0) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    230509 4hsl:A (2.0) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    230510 4hsl:A (2.0) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    230511 4hsn:A (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230512 4hsn:A (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230513 4hsn:B (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230514 4hsn:B (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230515 4hsn:C (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230516 4hsn:C (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230517 4hsn:D (2.0) BS01 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230518 4hsn:D (2.0) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230519 4hso:A (2.1) BS01 TYR 2.5.1.54 GO:0003849 ... Q9K169 23754471 MOAD: Kd=22uM
    230520 4hso:A (2.1) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230521 4hso:A (2.1) BS03 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230522 4hso:B (2.1) BS01 TYR 2.5.1.54 GO:0003849 ... Q9K169 23754471 MOAD: Kd=22uM
    230523 4hso:B (2.1) BS02 TYR 2.5.1.54 GO:0003849 ... Q9K169 23754471 MOAD: Kd=22uM
    230524 4hso:B (2.1) BS03 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230525 4hso:B (2.1) BS04 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230526 4hso:C (2.1) BS01 TYR 2.5.1.54 GO:0003849 ... Q9K169 23754471 MOAD: Kd=22uM
    230527 4hso:C (2.1) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230528 4hso:C (2.1) BS03 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230529 4hso:C (2.1) BS04 TYR 2.5.1.54 GO:0003849 ... Q9K169 23754471 MOAD: Kd=22uM
    230530 4hso:D (2.1) BS01 TYR 2.5.1.54 GO:0003849 ... Q9K169 23754471 MOAD: Kd=22uM
    230531 4hso:D (2.1) BS02 PEP 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230532 4hso:D (2.1) BS03 MN 2.5.1.54 GO:0003849 ... Q9K169 23754471
    230533 4hsq:A (1.87) BS01 CA ? N/A Q6NK05 24816089
    230534 4hsr:B (2.13) BS01 GLJ N/A GO:0016787 ... N/A 23373797
    230535 4hss:A (2.5) BS01 CA ? N/A Q6NK05 24816089
    230536 4hss:B (2.5) BS01 CA ? N/A Q6NK05 24816089
    230537 4hst:B (1.571) BS01 GLJ N/A GO:0016787 ... N/A 23373797
    230538 4hsu:A (1.988) BS01 peptide 1.14.99.66 GO:0000786 ... Q8NB78 23357850
    230539 4hsu:A (1.988) BS02 peptide 1.14.99.66 GO:0000786 ... Q8NB78 23357850
    230540 4hsu:A (1.988) BS03 FAD 1.14.99.66 GO:0000786 ... Q8NB78 23357850
    230541 4hsu:A (1.988) BS04 ZN 1.14.99.66 GO:0000786 ... Q8NB78 23357850
    230542 4hsu:A (1.988) BS05 ZN 1.14.99.66 GO:0000786 ... Q8NB78 23357850
    230543 4hsu:A (1.988) BS06 ZN 1.14.99.66 GO:0000786 ... Q8NB78 23357850
    230544 4hsw:A (1.22) BS01 HEM 1.11.1.7 GO:0019825 ... Q9NAV8 23480794
    230545 4hsw:B (1.22) BS01 HEM 1.11.1.7 GO:0019825 ... Q9NAV8 23480794
    230546 4hsx:A (1.12) BS01 HEM 1.11.1.7 GO:0019825 ... Q9NAV8 23480794
    230547 4hsx:A (1.12) BS02 BML 1.11.1.7 GO:0019825 ... Q9NAV8 23480794
    230548 4hsx:B (1.12) BS01 HEM 1.11.1.7 GO:0019825 ... Q9NAV8 23480794
    230549 4hsx:B (1.12) BS02 BML 1.11.1.7 GO:0019825 ... Q9NAV8 23480794
    230550 4hsz:A (2.25) BS01 CA ? GO:0001837 ... P26447 N/A
    230551 4hsz:A (2.25) BS02 CA ? GO:0001837 ... P26447 N/A
    230552 4hsz:B (2.25) BS01 CA ? GO:0001837 ... P26447 N/A
    230553 4hsz:B (2.25) BS02 CA ? GO:0001837 ... P26447 N/A
    230554 4hsz:C (2.25) BS01 CA ? GO:0001837 ... P26447 N/A
    230555 4hsz:C (2.25) BS02 CA ? GO:0001837 ... P26447 N/A
    230556 4hsz:D (2.25) BS01 CA ? GO:0001837 ... P26447 N/A
    230557 4hsz:D (2.25) BS02 CA ? GO:0001837 ... P26447 N/A
    230558 4ht0:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 23394791
    230559 4ht0:A (1.6) BS02 V50 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 23394791 MOAD: Kd=10nM
    BindingDB: Kd=10.0nM
    230560 4ht2:A (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 23394791
    230561 4ht2:A (1.45) BS02 V50 4.2.1.1 GO:0004089 ... O43570 23394791 MOAD: Kd=290nM
    BindingDB: Kd=150nM
    230562 4ht2:B (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 23394791
    230563 4ht2:B (1.45) BS02 V50 4.2.1.1 GO:0004089 ... O43570 23394791 MOAD: Kd=290nM
    BindingDB: Kd=150nM
    230564 4ht2:C (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 23394791
    230565 4ht2:C (1.45) BS02 V50 4.2.1.1 GO:0004089 ... O43570 23394791 MOAD: Kd=290nM
    BindingDB: Kd=150nM
    230566 4ht2:D (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 23394791
    230567 4ht2:D (1.45) BS02 V50 4.2.1.1 GO:0004089 ... O43570 23394791 MOAD: Kd=290nM
    BindingDB: Kd=150nM
    230568 4ht3:A (1.3) BS01 F9F 4.2.1.20 GO:0000162 ... P00929 23952479
    230569 4ht3:B (1.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 23952479
    230570 4ht4:A (2.907) BS01 dna ? N/A Q53632 23359708
    230571 4ht4:A (2.907) BS02 CA ? N/A Q53632 23359708
    230572 4ht6:A (1.9) BS01 peptide ? GO:0000132 ... Q02647 23761070
    230573 4ht6:A (1.9) BS02 peptide ? GO:0000132 ... Q02647 23761070
    230574 4ht6:C (1.9) BS01 peptide ? GO:0000132 ... Q02647 23761070
    230575 4ht6:C (1.9) BS02 peptide ? GO:0000132 ... Q02647 23761070
    230576 4ht6:E (1.9) BS01 peptide ? GO:0000132 ... Q02647 23761070
    230577 4ht8:A (1.9) BS01 rna N/A GO:0003723 ... N/A 23605038
    230578 4ht8:B (1.9) BS01 rna N/A GO:0003723 ... N/A 23605038
    230579 4ht8:B (1.9) BS02 rna N/A GO:0003723 ... N/A 23605038
    230580 4ht8:C (1.9) BS01 rna N/A GO:0003723 ... N/A 23605038
    230581 4ht8:D (1.9) BS01 rna N/A GO:0003723 ... N/A 23605038
    230582 4ht8:E (1.9) BS01 rna N/A GO:0003723 ... N/A 23605038
    230583 4ht8:E (1.9) BS02 rna N/A GO:0003723 ... N/A 23605038
    230584 4ht8:F (1.9) BS01 rna N/A GO:0003723 ... N/A 23605038
    230585 4ht9:A (1.8) BS01 rna N/A GO:0003723 ... N/A 23605038
    230586 4ht9:A (1.8) BS02 rna N/A GO:0003723 ... N/A 23605038
    230587 4ht9:B (1.8) BS01 rna N/A GO:0003723 ... N/A 23605038
    230588 4ht9:B (1.8) BS02 rna N/A GO:0003723 ... N/A 23605038
    230589 4ht9:C (1.8) BS01 rna N/A GO:0003723 ... N/A 23605038
    230590 4ht9:C (1.8) BS02 rna N/A GO:0003723 ... N/A 23605038
    230591 4htb:A (1.9) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 25951081
    230592 4hte:A (3.0) BS01 CA ? N/A O87361 23359708
    230593 4htf:A (1.6) BS01 SAM 2.1.1.- GO:0004712 ... Q8XDG3 N/A
    230594 4htf:B (1.6) BS01 SAM 2.1.1.- GO:0004712 ... Q8XDG3 N/A
    230595 4htg:A (1.45) BS01 18W 2.5.1.61 GO:0004418 ... Q43316 23519422
    230596 4hth:A (1.75) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    230597 4htp:A (2.2502) BS01 peptide 6.5.1.1 GO:0003677 ... P49917 23219551
    230598 4htp:B (2.2502) BS01 peptide 6.5.1.1 GO:0003677 ... P49917 23219551
    230599 4htr:A (1.6) BS01 SO3 1.8.1.2 GO:0004783 ... P17846 23153334
    230600 4htr:A (1.6) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 23153334

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).