SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    233401 4ioa:F (3.2) BS01 rna ? GO:0003735 ... Q9RSS7 23414806
    233402 4ioa:G (3.2) BS01 rna ? GO:0003729 ... Q9RXY1 23414806
    233403 4ioa:H (3.2) BS01 rna ? GO:0003735 ... Q9RXJ2 23414806
    233404 4ioa:I (3.2) BS01 rna ? GO:0003735 ... Q9RSK9 23414806
    233405 4ioa:J (3.2) BS01 rna ? GO:0003735 ... Q9RXJ5 23414806
    233406 4ioa:J (3.2) BS02 rna ? GO:0003735 ... Q9RXJ5 23414806
    233407 4ioa:K (3.2) BS01 rna ? GO:0003735 ... Q9RSJ5 23414806
    233408 4ioa:L (3.2) BS01 rna ? GO:0003735 ... Q9RSL2 23414806
    233409 4ioa:L (3.2) BS02 rna ? GO:0003735 ... Q9RSL2 23414806
    233410 4ioa:M (3.2) BS01 rna ? GO:0003735 ... Q9RWB4 23414806
    233411 4ioa:N (3.2) BS01 rna ? GO:0000027 ... Q9RSW7 23414806
    233412 4ioa:O (3.2) BS01 rna ? GO:0003723 ... Q9RY64 23414806
    233413 4ioa:P (3.2) BS01 rna ? GO:0003735 ... Q9RXJ7 23414806
    233414 4ioa:Q (3.2) BS01 rna ? GO:0003735 ... Q9RXK0 23414806
    233415 4ioa:R (3.2) BS01 rna ? GO:0003723 ... Q9RXJ1 23414806
    233416 4ioa:S (3.2) BS01 rna ? GO:0003723 ... Q9RX88 23414806
    233417 4ioa:S (3.2) BS02 rna ? GO:0003723 ... Q9RX88 23414806
    233418 4ioa:T (3.2) BS01 rna ? GO:0003735 ... Q9RY65 23414806
    233419 4ioa:U (3.2) BS01 rna ? GO:0003735 ... Q9RRG8 23414806
    233420 4ioa:V (3.2) BS01 rna ? GO:0003735 ... Q9RXJ4 23414806
    233421 4ioa:W (3.2) BS01 rna ? GO:0003735 ... Q9RSL0 23414806
    233422 4ioa:W (3.2) BS02 rna ? GO:0003735 ... Q9RSL0 23414806
    233423 4ioa:Z (3.2) BS01 rna ? GO:0003735 ... P49228 23414806
    233424 4ioc:1 (3.6) BS01 rna ? GO:0003735 ... Q9RSS4 23414806
    233425 4ioc:2 (3.6) BS01 rna ? GO:0003735 ... Q9RSH2 23414806
    233426 4ioc:3 (3.6) BS01 rna ? GO:0003735 ... Q9RSW6 23414806
    233427 4ioc:4 (3.6) BS01 rna ? GO:0003735 ... Q9RSK0 23414806
    233428 4ioc:A (3.6) BS01 rna ? GO:0002181 ... Q9RXJ9 23414806
    233429 4ioc:B (3.6) BS01 rna ? GO:0003735 ... Q9RXK2 23414806
    233430 4ioc:C (3.6) BS01 rna ? GO:0003735 ... Q9RXK1 23414806
    233431 4ioc:D (3.6) BS01 rna ? GO:0000049 ... Q9RXJ0 23414806
    233432 4ioc:D (3.6) BS02 rna ? GO:0000049 ... Q9RXJ0 23414806
    233433 4ioc:E (3.6) BS01 rna ? GO:0002181 ... Q9RSL3 23414806
    233434 4ioc:F (3.6) BS01 rna ? GO:0003735 ... Q9RSS7 23414806
    233435 4ioc:G (3.6) BS01 rna ? GO:0003729 ... Q9RXY1 23414806
    233436 4ioc:H (3.6) BS01 rna ? GO:0003735 ... Q9RXJ2 23414806
    233437 4ioc:I (3.6) BS01 rna ? GO:0003735 ... Q9RSK9 23414806
    233438 4ioc:J (3.6) BS01 rna ? GO:0003735 ... Q9RXJ5 23414806
    233439 4ioc:J (3.6) BS02 rna ? GO:0003735 ... Q9RXJ5 23414806
    233440 4ioc:K (3.6) BS01 rna ? GO:0003735 ... Q9RSJ5 23414806
    233441 4ioc:L (3.6) BS01 rna ? GO:0003735 ... Q9RSL2 23414806
    233442 4ioc:L (3.6) BS02 rna ? GO:0003735 ... Q9RSL2 23414806
    233443 4ioc:M (3.6) BS01 rna ? GO:0003735 ... Q9RWB4 23414806
    233444 4ioc:N (3.6) BS01 rna ? GO:0000027 ... Q9RSW7 23414806
    233445 4ioc:O (3.6) BS01 rna ? GO:0003723 ... Q9RY64 23414806
    233446 4ioc:P (3.6) BS01 rna ? GO:0003735 ... Q9RXJ7 23414806
    233447 4ioc:Q (3.6) BS01 rna ? GO:0003735 ... Q9RXK0 23414806
    233448 4ioc:R (3.6) BS01 rna ? GO:0003723 ... Q9RXJ1 23414806
    233449 4ioc:S (3.6) BS01 rna ? GO:0003723 ... Q9RX88 23414806
    233450 4ioc:S (3.6) BS02 rna ? GO:0003723 ... Q9RX88 23414806
    233451 4ioc:T (3.6) BS01 rna ? GO:0003735 ... Q9RY65 23414806
    233452 4ioc:U (3.6) BS01 rna ? GO:0003735 ... Q9RRG8 23414806
    233453 4ioc:V (3.6) BS01 rna ? GO:0003735 ... Q9RXJ4 23414806
    233454 4ioc:W (3.6) BS01 rna ? GO:0003735 ... Q9RSL0 23414806
    233455 4ioc:W (3.6) BS02 rna ? GO:0003735 ... Q9RSL0 23414806
    233456 4ioc:Z (3.6) BS01 rna ? GO:0003735 ... P49228 23414806
    233457 4iof:A (3.353) BS01 ZN 3.4.24.56 GO:0001540 ... P14735 23922390
    233458 4ioi:A (1.95) BS01 peptide N/A N/A N/A 24101516
    233459 4ioi:B (1.95) BS01 peptide N/A N/A N/A 24101516
    233460 4iok:A (2.497) BS01 ADP 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233461 4iok:A (2.497) BS02 XPO 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233462 4iok:A (2.497) BS03 MG 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233463 4iok:B (2.497) BS01 ADP 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233464 4iok:B (2.497) BS02 XPO 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233465 4iok:B (2.497) BS03 MG 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233466 4iol:A (2.563) BS01 ADP 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233467 4iol:A (2.563) BS02 ZD9 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233468 4iol:A (2.563) BS03 XPO 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233469 4iol:B (2.563) BS01 ADP 6.3.4.3 GO:0004329 ... Q2RM91 23533144
    233470 4ioo:A (1.25) BS01 BAE ? N/A O60885 24100334
    233471 4iou:A (2.751) BS01 ZN 3.5.4.38 GO:0008270 ... Q8IUX4 23685212
    233472 4iou:B (2.751) BS01 ZN 3.5.4.38 GO:0008270 ... Q8IUX4 23685212
    233473 4iou:C (2.751) BS01 ZN 3.5.4.38 GO:0008270 ... Q8IUX4 23685212
    233474 4iou:D (2.751) BS01 ZN 3.5.4.38 GO:0008270 ... Q8IUX4 23685212
    233475 4iov:A (3.5) BS01 D5M ? GO:0005198 ... B4Y891 24704217
    233476 4iox:C (2.458) BS01 peptide 3.1.-.- GO:0051276 ... P04295 23596306
    233477 4ip2:A (1.95) BS01 MG 4.1.1.93 GO:0005737 ... Q9I6N5 23671667
    233478 4ip2:B (1.95) BS01 MG 4.1.1.93 GO:0005737 ... Q9I6N5 23671667
    233479 4ip2:C (1.95) BS01 MG 4.1.1.93 GO:0005737 ... Q9I6N5 23671667
    233480 4ip4:A (2.128) BS01 MG 4.2.1.68 GO:0000287 ... A0ACD6B8A2 N/A
    233481 4ip4:B (2.128) BS01 MG 4.2.1.68 GO:0000287 ... A0ACD6B8A2 N/A
    233482 4ip5:A (2.13) BS01 EHM 4.2.1.68 GO:0000287 ... A0ACD6B8A2 N/A
    233483 4ip5:A (2.13) BS02 MG 4.2.1.68 GO:0000287 ... A0ACD6B8A2 N/A
    233484 4ip5:B (2.13) BS01 EHM 4.2.1.68 GO:0000287 ... A0ACD6B8A2 N/A
    233485 4ip5:B (2.13) BS02 MG 4.2.1.68 GO:0000287 ... A0ACD6B8A2 N/A
    233486 4ip7:A (1.8) BS01 MN 2.7.1.40 GO:0000287 ... P30613 23270483
    233487 4ip7:A (1.8) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 23270483
    233488 4ip7:B (1.8) BS01 MN 2.7.1.40 GO:0000287 ... P30613 23270483
    233489 4ip7:B (1.8) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 23270483
    233490 4ip7:C (1.8) BS01 MN 2.7.1.40 GO:0000287 ... P30613 23270483
    233491 4ip7:C (1.8) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 23270483
    233492 4ip7:D (1.8) BS01 MN 2.7.1.40 GO:0000287 ... P30613 23270483
    233493 4ip7:D (1.8) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 23270483
    233494 4ip7:D (1.8) BS03 ADN 2.7.1.40 GO:0000287 ... P30613 23270483
    233495 4ipe:A (2.289) BS01 ANP ? GO:0000287 ... A8WFV1 24462206
    233496 4ipe:B (2.289) BS01 ANP ? GO:0000287 ... A8WFV1 24462206
    233497 4ipf:A (1.7) BS01 1F0 2.3.2.27 GO:0005634 ... P56273 23400593 MOAD: ic50=18nM
    233498 4iph:A (1.94) BS01 1FJ ? GO:0003677 ... P27694 23962067 MOAD: Kd=5.01uM
    233499 4ipi:A (1.75) BS01 MN 2.5.1.56 GO:0016051 ... Q57265 23534460
    233500 4ipj:A (2.15) BS01 MN 2.5.1.56 GO:0016051 ... Q57265 23534460
    233501 4ipm:A (1.14) BS01 SGC 3.2.1.91 GO:0004553 ... D4HRL0 23733951
    233502 4ipm:A (1.14) BS02 BGC 3.2.1.91 GO:0004553 ... D4HRL0 23733951
    233503 4ipn:B (2.411) BS01 SGC 3.2.1.86 GO:0004553 ... A0A0H2UP35 23580646
    233504 4ipn:B (2.411) BS02 RTG 3.2.1.86 GO:0004553 ... A0A0H2UP35 23580646
    233505 4ipn:E (2.411) BS01 RTG 3.2.1.86 GO:0004553 ... A0A0H2UP35 23580646
    233506 4ipp:A (1.33) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    233507 4ips:A (1.2) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 23620594
    233508 4ips:A (1.2) BS02 1G4 1.14.19.70 GO:0004497 ... P9WPP7 23620594 MOAD: Kd=657uM
    233509 4ipw:A (1.4) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 23620594
    233510 4ipw:A (1.4) BS02 1G7 1.14.19.70 GO:0004497 ... P9WPP7 23620594 MOAD: Kd=14.5uM
    233511 4ipz:A (1.67) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 24196705
    233512 4iq6:A (3.12) BS01 IQ6 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 24900653 BindingDB: Ki=58nM
    233513 4iq6:B (3.12) BS01 IQ6 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 24900653 BindingDB: Ki=58nM
    233514 4iq7:A (1.9) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 23620594
    233515 4iq7:A (1.9) BS02 1G9 1.14.19.70 GO:0004497 ... P9WPP7 23620594 MOAD: Kd=1561uM
    233516 4iq9:A (1.4) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 23620594
    233517 4iq9:A (1.4) BS02 1GB 1.14.19.70 GO:0004497 ... P9WPP7 23620594 MOAD: Kd=39uM
    233518 4iqd:A (2.0) BS01 PYR 4.1.3.30 GO:0003824 ... A0A6L7HJ56 N/A
    233519 4iqd:A (2.0) BS02 PYR 4.1.3.30 GO:0003824 ... A0A6L7HJ56 N/A
    233520 4iqd:A (2.0) BS03 PYR 4.1.3.30 GO:0003824 ... A0A6L7HJ56 N/A
    233521 4iqd:B (2.0) BS01 PYR 4.1.3.30 GO:0003824 ... A0A6L7HJ56 N/A
    233522 4iqg:A (1.85) BS01 NAP ? GO:0016614 ... A0ACD6B888 N/A
    233523 4iqg:B (1.85) BS01 NAP ? GO:0016614 ... A0ACD6B888 N/A
    233524 4iqg:C (1.85) BS01 NAP ? GO:0016614 ... A0ACD6B888 N/A
    233525 4iqg:D (1.85) BS01 NAP ? GO:0016614 ... A0ACD6B888 N/A
    233526 4iqi:A (1.5) BS01 CYT 1.7.1.13 GO:0005737 ... Q9KTK0 N/A
    233527 4iqi:B (1.5) BS01 CYT 1.7.1.13 GO:0005737 ... Q9KTK0 N/A
    233528 4iqj:A (3.2) BS01 dna 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233529 4iqj:A (3.2) BS02 dna 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233530 4iqj:A (3.2) BS03 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233531 4iqj:A (3.2) BS04 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233532 4iqj:A (3.2) BS05 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233533 4iqj:A (3.2) BS06 MG 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233534 4iqj:B (3.2) BS01 dna 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233535 4iqj:B (3.2) BS02 dna 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233536 4iqj:B (3.2) BS03 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233537 4iqj:B (3.2) BS04 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233538 4iqj:B (3.2) BS05 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233539 4iqj:B (3.2) BS06 MG 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233540 4iqj:C (3.2) BS01 dna 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233541 4iqj:C (3.2) BS02 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233542 4iqj:C (3.2) BS03 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233543 4iqj:C (3.2) BS04 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233544 4iqj:C (3.2) BS05 MG 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233545 4iqj:D (3.2) BS01 dna 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233546 4iqj:D (3.2) BS02 dna 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233547 4iqj:D (3.2) BS03 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233548 4iqj:D (3.2) BS04 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233549 4iqj:D (3.2) BS05 ZN 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233550 4iqj:D (3.2) BS06 MG 2.7.7.7 GO:0003676 ... Q9XDH5 23478062
    233551 4iqk:A (1.97) BS01 IQK ? N/A Q14145 23647822 MOAD: ic50=2.7uM
    BindingDB: IC50=1600nM, Kd=500nM, Ki=250nM, EC50=5800nM
    233552 4iql:A (1.938) BS01 FMN 1.3.1.9 GO:0018580 ... Q7MAW0 29400320
    233553 4iql:A (1.938) BS02 NDP 1.3.1.9 GO:0018580 ... Q7MAW0 29400320
    233554 4iql:A (1.938) BS03 NDP 1.3.1.9 GO:0018580 ... Q7MAW0 29400320
    233555 4iql:B (1.938) BS01 FMN 1.3.1.9 GO:0018580 ... Q7MAW0 29400320
    233556 4iql:B (1.938) BS02 NDP 1.3.1.9 GO:0018580 ... Q7MAW0 29400320
    233557 4iql:B (1.938) BS03 NDP 1.3.1.9 GO:0018580 ... Q7MAW0 29400320
    233558 4iqr:A (2.9) BS01 dna ? GO:0000978 ... P41235 23485969
    233559 4iqr:A (2.9) BS02 dna ? GO:0000978 ... P41235 23485969
    233560 4iqr:A (2.9) BS03 peptide ? GO:0000978 ... P41235 23485969
    233561 4iqr:A (2.9) BS04 ZN ? GO:0000978 ... P41235 23485969
    233562 4iqr:A (2.9) BS05 ZN ? GO:0000978 ... P41235 23485969
    233563 4iqr:B (2.9) BS01 dna ? GO:0000978 ... P41235 23485969
    233564 4iqr:B (2.9) BS02 dna ? GO:0000978 ... P41235 23485969
    233565 4iqr:B (2.9) BS03 peptide ? GO:0000978 ... P41235 23485969
    233566 4iqr:B (2.9) BS04 ZN ? GO:0000978 ... P41235 23485969
    233567 4iqr:B (2.9) BS05 ZN ? GO:0000978 ... P41235 23485969
    233568 4iqr:E (2.9) BS01 dna ? GO:0000978 ... P41235 23485969
    233569 4iqr:E (2.9) BS02 dna ? GO:0000978 ... P41235 23485969
    233570 4iqr:E (2.9) BS03 peptide ? GO:0000978 ... P41235 23485969
    233571 4iqr:E (2.9) BS04 ZN ? GO:0000978 ... P41235 23485969
    233572 4iqr:E (2.9) BS05 ZN ? GO:0000978 ... P41235 23485969
    233573 4iqr:F (2.9) BS01 dna ? GO:0000978 ... P41235 23485969
    233574 4iqr:F (2.9) BS02 dna ? GO:0000978 ... P41235 23485969
    233575 4iqr:F (2.9) BS03 peptide ? GO:0000978 ... P41235 23485969
    233576 4iqr:F (2.9) BS04 ZN ? GO:0000978 ... P41235 23485969
    233577 4iqr:F (2.9) BS05 ZN ? GO:0000978 ... P41235 23485969
    233578 4iqt:A (2.6) BS01 1FO 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23968551
    233579 4iqu:A (2.4) BS01 1FQ 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23968551
    233580 4iqv:A (2.9) BS01 dna 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23968551
    233581 4iqv:A (2.9) BS02 1FO 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23968551
    233582 4iqw:A (2.6) BS01 dna 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23968551
    233583 4iqw:A (2.6) BS02 1FQ 2.7.7.31
    3.1.11.-    		 GO:0003677 ... P09838 23968551
    233584 4iqx:A (2.5) BS01 rna 3.4.22.46
    3.6.1.15    		 GO:0003723 ... Q9QCE4 20865120
    233585 4iqx:A (2.5) BS02 rna 3.4.22.46
    3.6.1.15    		 GO:0003723 ... Q9QCE4 20865120
    233586 4iqy:A (1.55) BS01 AR6 3.2.2.-
    3.5.1.-    		 N/A A1Z1Q3 23474712
    233587 4iqy:B (1.55) BS01 AR6 3.2.2.-
    3.5.1.-    		 N/A A1Z1Q3 23474712
    233588 4ir0:A (1.6) BS01 ZN 2.5.1.- GO:0000287 ... Q81W73 N/A
    233589 4ir0:A (1.6) BS02 FCN 2.5.1.- GO:0000287 ... Q81W73 N/A
    233590 4ir0:A (1.6) BS03 FCN 2.5.1.- GO:0000287 ... Q81W73 N/A
    233591 4ir0:B (1.6) BS01 FCN 2.5.1.- GO:0000287 ... Q81W73 N/A
    233592 4ir0:B (1.6) BS02 ZN 2.5.1.- GO:0000287 ... Q81W73 N/A
    233593 4ir0:B (1.6) BS03 FCN 2.5.1.- GO:0000287 ... Q81W73 N/A
    233594 4ir1:A (2.38) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 23525461
    233595 4ir1:A (2.38) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 23525461
    233596 4ir1:A (2.38) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 23525461
    233597 4ir1:A (2.38) BS04 1FZ 2.7.7.7 GO:0000287 ... Q47155 23525461
    233598 4ir1:A (2.38) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 23525461
    233599 4ir1:A (2.38) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 23525461
    233600 4ir1:F (2.38) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 23525461
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).