SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    235201 4j6b:A (2.2) BS03 MG ? GO:0004497 ... Q5YNS8 25372679
    235202 4j6b:B (2.2) BS01 HEM ? GO:0004497 ... Q5YNS8 25372679
    235203 4j6b:B (2.2) BS02 MG ? GO:0004497 ... Q5YNS8 25372679
    235204 4j6b:B (2.2) BS03 PLO ? GO:0004497 ... Q5YNS8 25372679
    235205 4j6c:A (1.9) BS01 STR ? GO:0004497 ... Q5YNS8 25372679
    235206 4j6c:A (1.9) BS02 HEM ? GO:0004497 ... Q5YNS8 25372679
    235207 4j6c:A (1.9) BS03 MG ? GO:0004497 ... Q5YNS8 25372679
    235208 4j6c:B (1.9) BS01 HEM ? GO:0004497 ... Q5YNS8 25372679
    235209 4j6c:B (1.9) BS02 MG ? GO:0004497 ... Q5YNS8 25372679
    235210 4j6c:B (1.9) BS03 STR ? GO:0004497 ... Q5YNS8 25372679
    235211 4j6d:A (2.4) BS01 HEM ? GO:0004497 ... Q5YNS8 25372679
    235212 4j6d:A (2.4) BS02 MG ? GO:0004497 ... Q5YNS8 25372679
    235213 4j6d:A (2.4) BS03 TES ? GO:0004497 ... Q5YNS8 25372679
    235214 4j6d:B (2.4) BS01 HEM ? GO:0004497 ... Q5YNS8 25372679
    235215 4j6d:B (2.4) BS02 TES ? GO:0004497 ... Q5YNS8 25372679
    235216 4j6d:B (2.4) BS03 MG ? GO:0004497 ... Q5YNS8 25372679
    235217 4j6e:A (2.52) BS01 UDG 3.6.1.54 GO:0042802 ... A0A0H3C8Q1 23042606
    235218 4j6g:C (2.4) BS01 MG ? N/A O95407 25087510
    235219 4j6g:D (2.4) BS01 MG ? N/A O95407 25087510
    235220 4j6h:A (1.6) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    235221 4j6h:A (1.6) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    235222 4j6i:A (2.9) BS01 1JV 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 23540645 BindingDB: IC50=1.4nM
    235223 4j6o:A (1.6) BS01 MN 3.1.3.16 GO:0016787 ... A3DJ38 23595150
    235224 4j6o:B (1.6) BS01 MN 3.1.3.16 GO:0016787 ... A3DJ38 23595150
    235225 4j6r:G (1.64) BS01 CA ? GO:0019031 ... Q8J581 23661761
    235226 4j6r:L (1.64) BS01 BU3 N/A N/A N/A 23661761
    235227 4j6s:A (3.08) BS01 peptide ? GO:0002842 ... P61981 24055376
    235228 4j6s:B (3.08) BS01 peptide ? GO:0002842 ... P61981 24055376
    235229 4j6s:C (3.08) BS01 peptide ? GO:0002842 ... P61981 24055376
    235230 4j6s:D (3.08) BS01 peptide ? GO:0002842 ... P61981 24055376
    235231 4j6t:A (2.43) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    235232 4j6t:A (2.43) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    235233 4j6t:B (2.43) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    235234 4j6t:B (2.43) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    235235 4j6v:A (1.9) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    235236 4j6v:B (1.9) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    235237 4j6w:A (1.8) BS01 CTP ? GO:0003723 ... Q9HUM0 23897473
    235238 4j6w:A (1.8) BS02 C ? GO:0003723 ... Q9HUM0 23897473
    235239 4j6w:A (1.8) BS03 MG ? GO:0003723 ... Q9HUM0 23897473
    235240 4j6w:A (1.8) BS04 CTP ? GO:0003723 ... Q9HUM0 23897473
    235241 4j6w:B (1.8) BS01 CTP ? GO:0003723 ... Q9HUM0 23897473
    235242 4j6w:B (1.8) BS02 C ? GO:0003723 ... Q9HUM0 23897473
    235243 4j6w:C (1.8) BS01 CTP ? GO:0003723 ... Q9HUM0 23897473
    235244 4j6w:C (1.8) BS02 C ? GO:0003723 ... Q9HUM0 23897473
    235245 4j6w:C (1.8) BS03 C ? GO:0003723 ... Q9HUM0 23897473
    235246 4j6w:D (1.8) BS01 C ? GO:0003723 ... Q9HUM0 23897473
    235247 4j6w:D (1.8) BS02 CTP ? GO:0003723 ... Q9HUM0 23897473
    235248 4j6w:D (1.8) BS03 MG ? GO:0003723 ... Q9HUM0 23897473
    235249 4j6w:D (1.8) BS04 CDP ? GO:0003723 ... Q9HUM0 23897473
    235250 4j6w:E (1.8) BS01 C ? GO:0003723 ... Q9HUM0 23897473
    235251 4j6w:E (1.8) BS02 C ? GO:0003723 ... Q9HUM0 23897473
    235252 4j6w:E (1.8) BS03 CTP ? GO:0003723 ... Q9HUM0 23897473
    235253 4j6w:F (1.8) BS01 C ? GO:0003723 ... Q9HUM0 23897473
    235254 4j6w:F (1.8) BS02 CDP ? GO:0003723 ... Q9HUM0 23897473
    235255 4j6w:F (1.8) BS03 CTP ? GO:0003723 ... Q9HUM0 23897473
    235256 4j6x:A (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    235257 4j6x:B (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    235258 4j6x:C (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    235259 4j6x:D (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    235260 4j6x:E (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    235261 4j6x:F (2.222) BS01 UTP ? GO:0003723 ... Q9HUM0 23897473
    235262 4j70:K (2.8) BS01 1KR 3.4.25.1 GO:0004298 ... P30656 23547757
    235263 4j70:Y (2.8) BS01 1KR 3.4.25.1 GO:0004298 ... P30656 23547757
    235264 4j71:A (2.31) BS01 1JX 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 N/A BindingDB: Kd=600000nM
    235265 4j71:B (2.31) BS01 1JX 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 N/A BindingDB: Kd=600000nM
    235266 4j73:A (1.439) BS01 peptide ? N/A P41811 23481256
    235267 4j74:A (1.2) BS01 I18 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=26uM
    235268 4j74:A (1.2) BS02 I18 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=26uM
    235269 4j75:A (2.4) BS01 TYM 6.1.1.2 GO:0000166 ... Q8IDW3 23665145
    235270 4j75:B (2.4) BS01 TYM 6.1.1.2 GO:0000166 ... Q8IDW3 23665145
    235271 4j77:A (1.756) BS01 peptide ? N/A P41811 23481256
    235272 4j77:B (1.756) BS01 peptide ? N/A P41811 23481256
    235273 4j78:A (1.478) BS01 peptide ? N/A P41811 23481256
    235274 4j79:A (1.559) BS01 peptide ? N/A P41811 23481256
    235275 4j7c:A (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235276 4j7c:B (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235277 4j7c:C (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235278 4j7c:D (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235279 4j7c:E (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235280 4j7c:F (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235281 4j7c:G (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235282 4j7c:G (3.5) BS02 ATP ? GO:0005267 ... O32080 23598340
    235283 4j7c:H (3.5) BS01 ATP ? GO:0005267 ... O32080 23598340
    235284 4j7c:I (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    235285 4j7c:J (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    235286 4j7c:K (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    235287 4j7c:L (3.5) BS01 K ? GO:0005515 ... O32081 23598340
    235288 4j7d:A (1.25) BS01 I31 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=20uM
    235289 4j7e:A (1.63) BS01 I29 2.3.2.27 GO:0005634 ... P56273 24900726 MOAD: Kd=14uM
    235290 4j7f:A (1.59) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 N/A
    235291 4j7f:A (1.59) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 N/A
    235292 4j7g:A (1.7) BS01 TRH 4.2.1.159 GO:0016829 ... O52793 23473392
    235293 4j7g:A (1.7) BS02 1JB 4.2.1.159 GO:0016829 ... O52793 23473392
    235294 4j7g:B (1.7) BS01 TRH 4.2.1.159 GO:0016829 ... O52793 23473392
    235295 4j7g:B (1.7) BS02 1JB 4.2.1.159 GO:0016829 ... O52793 23473392
    235296 4j7h:A (1.69) BS01 TLO 4.2.1.159 GO:0016829 ... O52793 23473392
    235297 4j7h:A (1.69) BS02 TRH 4.2.1.159 GO:0016829 ... O52793 23473392
    235298 4j7h:B (1.69) BS01 TLO 4.2.1.159 GO:0016829 ... O52793 23473392
    235299 4j7h:B (1.69) BS02 TRH 4.2.1.159 GO:0016829 ... O52793 23473392
    235300 4j7i:A (2.56) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    235301 4j7i:A (2.56) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    235302 4j7l:A (1.8) BS01 rna 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235303 4j7l:A (1.8) BS02 UBD 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235304 4j7l:A (1.8) BS03 MG 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235305 4j7l:A (1.8) BS04 MG 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235306 4j7m:A (1.7) BS01 rna 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235307 4j7m:A (1.7) BS02 UBD 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235308 4j7m:A (1.7) BS03 UBD 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235309 4j7m:A (1.7) BS04 CA 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235310 4j7n:A (1.5) BS01 GTG 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235311 4j7n:A (1.5) BS02 GTG 3.1.13.-
    3.6.1.-
    GO:0000287 ... O70348 23523372
    235312 4j7q:A (1.55) BS01 B7N ? GO:0005737 ... P53860 23603387
    235313 4j7q:A (1.55) BS02 B7N ? GO:0005737 ... P53860 23603387
    235314 4j7q:B (1.55) BS01 B7N ? GO:0005737 ... P53860 23603387
    235315 4j7q:B (1.55) BS02 B7N ? GO:0005737 ... P53860 23603387
    235316 4j7t:A (3.203) BS01 1JO 2.5.1.-
    4.4.1.20
    GO:0004364 ... Q16873 24366866
    235317 4j7u:A (2.44) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 23704574
    235318 4j7u:A (2.44) BS02 YTZ 1.1.1.153 GO:0004757 ... P35270 23704574 MOAD: Ki=14nM
    235319 4j7u:B (2.44) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 23704574
    235320 4j7u:B (2.44) BS02 YTZ 1.1.1.153 GO:0004757 ... P35270 23704574 MOAD: Ki=14nM
    235321 4j7u:C (2.44) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 23704574
    235322 4j7u:C (2.44) BS02 YTZ 1.1.1.153 GO:0004757 ... P35270 23704574 MOAD: Ki=14nM
    235323 4j7u:D (2.44) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 23704574
    235324 4j7u:D (2.44) BS02 YTZ 1.1.1.153 GO:0004757 ... P35270 23704574 MOAD: Ki=14nM
    235325 4j7v:A (1.54) BS01 RBN 3.2.1.17 GO:0003796 ... P00698 24677803
    235326 4j7x:A (2.6) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 N/A
    235327 4j7x:A (2.6) BS02 SAS 1.1.1.153 GO:0004757 ... P35270 N/A
    235328 4j7x:B (2.6) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 N/A
    235329 4j7x:B (2.6) BS02 SAS 1.1.1.153 GO:0004757 ... P35270 N/A
    235330 4j7x:F (2.6) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 N/A
    235331 4j7x:F (2.6) BS02 SAS 1.1.1.153 GO:0004757 ... P35270 N/A
    235332 4j7x:J (2.6) BS01 NAP 1.1.1.153 GO:0004757 ... P35270 N/A
    235333 4j7x:J (2.6) BS02 SAS 1.1.1.153 GO:0004757 ... P35270 N/A
    235334 4j7y:A (2.901) BS01 1JP 2.5.1.-
    4.4.1.20
    GO:0004364 ... Q16873 24366866
    235335 4j81:A (1.745) BS01 peptide ? N/A P41811 23481256
    235336 4j81:B (1.745) BS01 peptide ? N/A P41811 23481256
    235337 4j82:A (1.461) BS01 peptide ? N/A P41811 23481256
    235338 4j82:B (1.461) BS01 peptide ? N/A P41811 23481256
    235339 4j83:A (1.7) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    235340 4j83:A (1.7) BS02 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    235341 4j84:A (1.473) BS01 peptide ? N/A P41811 23481256
    235342 4j84:B (1.473) BS01 peptide ? N/A P41811 23481256
    235343 4j86:A (1.48) BS01 peptide ? N/A P41811 23481256
    235344 4j86:B (1.48) BS01 peptide ? N/A P41811 23481256
    235345 4j8b:A (1.878) BS01 peptide ? N/A Q96WV5 23481256
    235346 4j8f:A (2.7) BS01 ADP ? GO:0005524 ... P0DMV9 23812373
    235347 4j8g:A (1.895) BS01 peptide ? N/A Q96WV5 23481256
    235348 4j8g:B (1.895) BS01 peptide ? N/A Q96WV5 23481256
    235349 4j8m:A (1.853) BS01 CJ5 2.7.11.1 GO:0000212 ... O14965 25175806 MOAD: ic50=48nM
    235350 4j8o:A (1.63) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 24093804
    235351 4j8o:A (1.63) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 24093804 BindingDB: IC50=30000nM
    235352 4j8p:A (1.5) BS01 FMN ? GO:0010181 ... N/A N/A
    235353 4j8r:A (2.303) BS01 peptide N/A N/A N/A 23629842
    235354 4j8r:B (2.303) BS01 peptide N/A N/A N/A 23629842
    235355 4j8r:C (2.303) BS01 peptide N/A N/A N/A 23629842
    235356 4j8r:D (2.303) BS01 peptide N/A N/A N/A 23629842
    235357 4j8s:A (1.55) BS01 peptide ? GO:0017148 ... A5YKK6 23644599
    235358 4j8t:A (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    BindingDB: Kd=474nM
    235359 4j8t:B (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    BindingDB: Kd=474nM
    235360 4j8t:C (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    BindingDB: Kd=474nM
    235361 4j8t:D (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    BindingDB: Kd=474nM
    235362 4j8u:A (2.38) BS01 dna ? GO:0000786 ... P84233 N/A
    235363 4j8u:A (2.38) BS02 dna ? GO:0000786 ... P84233 N/A
    235364 4j8u:B (2.38) BS01 dna ? GO:0000786 ... P62799 N/A
    235365 4j8u:B (2.38) BS02 dna ? GO:0000786 ... P62799 N/A
    235366 4j8u:C (2.38) BS01 dna ? GO:0000786 ... P06897 N/A
    235367 4j8u:C (2.38) BS02 dna ? GO:0000786 ... P06897 N/A
    235368 4j8u:D (2.38) BS01 dna ? GO:0000786 ... P02281 N/A
    235369 4j8u:D (2.38) BS02 dna ? GO:0000786 ... P02281 N/A
    235370 4j8u:E (2.38) BS01 dna ? GO:0000786 ... P84233 N/A
    235371 4j8u:E (2.38) BS02 dna ? GO:0000786 ... P84233 N/A
    235372 4j8u:F (2.38) BS01 dna ? GO:0000786 ... P62799 N/A
    235373 4j8u:F (2.38) BS02 dna ? GO:0000786 ... P62799 N/A
    235374 4j8u:F (2.38) BS03 ELJ ? GO:0000786 ... P62799 N/A
    235375 4j8u:G (2.38) BS01 dna ? GO:0000786 ... P06897 N/A
    235376 4j8u:G (2.38) BS02 dna ? GO:0000786 ... P06897 N/A
    235377 4j8u:H (2.38) BS01 dna ? GO:0000786 ... P02281 N/A
    235378 4j8u:H (2.38) BS02 dna ? GO:0000786 ... P02281 N/A
    235379 4j8u:H (2.38) BS03 ELJ ? GO:0000786 ... P02281 N/A
    235380 4j8u:H (2.38) BS04 ELJ ? GO:0000786 ... P02281 N/A
    235381 4j8v:A (2.58) BS01 dna ? GO:0000786 ... P84233 N/A
    235382 4j8v:A (2.58) BS02 dna ? GO:0000786 ... P84233 N/A
    235383 4j8v:B (2.58) BS01 dna ? GO:0000786 ... P62799 N/A
    235384 4j8v:B (2.58) BS02 dna ? GO:0000786 ... P62799 N/A
    235385 4j8v:C (2.58) BS01 dna ? GO:0000786 ... P06897 N/A
    235386 4j8v:C (2.58) BS02 dna ? GO:0000786 ... P06897 N/A
    235387 4j8v:D (2.58) BS01 dna ? GO:0000786 ... P02281 N/A
    235388 4j8v:D (2.58) BS02 dna ? GO:0000786 ... P02281 N/A
    235389 4j8v:E (2.58) BS01 dna ? GO:0000786 ... P84233 N/A
    235390 4j8v:E (2.58) BS02 dna ? GO:0000786 ... P84233 N/A
    235391 4j8v:F (2.58) BS01 dna ? GO:0000786 ... P62799 N/A
    235392 4j8v:F (2.58) BS02 dna ? GO:0000786 ... P62799 N/A
    235393 4j8v:G (2.58) BS01 dna ? GO:0000786 ... P06897 N/A
    235394 4j8v:G (2.58) BS02 dna ? GO:0000786 ... P06897 N/A
    235395 4j8v:H (2.58) BS01 dna ? GO:0000786 ... P02281 N/A
    235396 4j8v:H (2.58) BS02 dna ? GO:0000786 ... P02281 N/A
    235397 4j8w:A (2.41) BS01 dna ? GO:0000786 ... P84233 N/A
    235398 4j8w:A (2.41) BS02 dna ? GO:0000786 ... P84233 N/A
    235399 4j8w:B (2.41) BS01 dna ? GO:0000786 ... P62799 N/A
    235400 4j8w:B (2.41) BS02 dna ? GO:0000786 ... P62799 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).