SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    235401 4j8w:B (2.41) BS03 1MK ? GO:0000786 ... P62799 N/A
    235402 4j8w:C (2.41) BS01 dna ? GO:0000786 ... P06897 N/A
    235403 4j8w:C (2.41) BS02 dna ? GO:0000786 ... P06897 N/A
    235404 4j8w:D (2.41) BS01 dna ? GO:0000786 ... P02281 N/A
    235405 4j8w:D (2.41) BS02 dna ? GO:0000786 ... P02281 N/A
    235406 4j8w:D (2.41) BS03 1MK ? GO:0000786 ... P02281 N/A
    235407 4j8w:E (2.41) BS01 dna ? GO:0000786 ... P84233 N/A
    235408 4j8w:E (2.41) BS02 dna ? GO:0000786 ... P84233 N/A
    235409 4j8w:F (2.41) BS01 dna ? GO:0000786 ... P62799 N/A
    235410 4j8w:F (2.41) BS02 dna ? GO:0000786 ... P62799 N/A
    235411 4j8w:F (2.41) BS03 1MK ? GO:0000786 ... P62799 N/A
    235412 4j8w:G (2.41) BS01 dna ? GO:0000786 ... P06897 N/A
    235413 4j8w:G (2.41) BS02 dna ? GO:0000786 ... P06897 N/A
    235414 4j8w:G (2.41) BS03 1MK ? GO:0000786 ... P06897 N/A
    235415 4j8w:H (2.41) BS01 dna ? GO:0000786 ... P02281 N/A
    235416 4j8w:H (2.41) BS02 dna ? GO:0000786 ... P02281 N/A
    235417 4j8w:H (2.41) BS03 1MK ? GO:0000786 ... P02281 N/A
    235418 4j8x:A (2.87) BS01 dna ? GO:0000786 ... P84233 N/A
    235419 4j8x:A (2.87) BS02 dna ? GO:0000786 ... P84233 N/A
    235420 4j8x:B (2.87) BS01 dna ? GO:0000786 ... P62799 N/A
    235421 4j8x:B (2.87) BS02 dna ? GO:0000786 ... P62799 N/A
    235422 4j8x:C (2.87) BS01 dna ? GO:0000786 ... P06897 N/A
    235423 4j8x:C (2.87) BS02 dna ? GO:0000786 ... P06897 N/A
    235424 4j8x:D (2.87) BS01 dna ? GO:0000786 ... P02281 N/A
    235425 4j8x:D (2.87) BS02 dna ? GO:0000786 ... P02281 N/A
    235426 4j8x:E (2.87) BS01 dna ? GO:0000786 ... P84233 N/A
    235427 4j8x:E (2.87) BS02 dna ? GO:0000786 ... P84233 N/A
    235428 4j8x:F (2.87) BS01 dna ? GO:0000786 ... P62799 N/A
    235429 4j8x:F (2.87) BS02 dna ? GO:0000786 ... P62799 N/A
    235430 4j8x:G (2.87) BS01 dna ? GO:0000786 ... P06897 N/A
    235431 4j8x:G (2.87) BS02 dna ? GO:0000786 ... P06897 N/A
    235432 4j8x:H (2.87) BS01 dna ? GO:0000786 ... P02281 N/A
    235433 4j8x:H (2.87) BS02 dna ? GO:0000786 ... P02281 N/A
    235434 4j8x:H (2.87) BS03 RU7 ? GO:0000786 ... P02281 N/A
    235435 4j90:A (3.24) BS01 ATP ? GO:0005267 ... O32080 23598340
    235436 4j90:B (3.24) BS01 ATP ? GO:0005267 ... O32080 23598340
    235437 4j90:B (3.24) BS02 ATP ? GO:0005267 ... O32080 23598340
    235438 4j91:A (2.93) BS01 ADP ? GO:0005267 ... O32080 23598340
    235439 4j91:B (2.93) BS01 ADP ? GO:0005267 ... O32080 23598340
    235440 4j91:C (2.93) BS01 ADP ? GO:0005267 ... O32080 23598340
    235441 4j91:D (2.93) BS01 ADP ? GO:0005267 ... O32080 23598340
    235442 4j93:A (1.74) BS01 0OE ? GO:0016032 ... Q79791 23817385
    235443 4j93:A (1.74) BS02 1JR ? GO:0016032 ... Q79791 23817385
    235444 4j95:A (2.3767) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235445 4j95:B (2.3767) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235446 4j95:C (2.3767) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235447 4j95:D (2.3767) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235448 4j96:B (2.2972) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235449 4j97:A (2.5482) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235450 4j97:B (2.5482) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235451 4j97:C (2.5482) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235452 4j97:D (2.5482) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235453 4j98:B (2.3067) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235454 4j99:A (1.8474) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235455 4j99:B (1.8474) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235456 4j99:C (1.8474) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235457 4j99:C (1.8474) BS02 MG 2.7.10.1 GO:0004672 ... P21802 23871672
    235458 4j99:D (1.8474) BS01 ACP 2.7.10.1 GO:0004672 ... P21802 23871672
    235459 4j99:D (1.8474) BS02 MG 2.7.10.1 GO:0004672 ... P21802 23871672
    235460 4j99:D (1.8474) BS03 MG 2.7.10.1 GO:0004672 ... P21802 23871672
    235461 4j9a:A (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235462 4j9a:B (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235463 4j9a:C (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235464 4j9a:D (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235465 4j9a:E (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235466 4j9a:F (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235467 4j9a:G (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235468 4j9a:H (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235469 4j9a:I (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    235470 4j9c:A (1.051) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235471 4j9d:A (1.5) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235472 4j9d:C (1.5) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235473 4j9d:E (1.5) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235474 4j9e:A (1.4) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235475 4j9e:C (1.4) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235476 4j9e:E (1.4) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235477 4j9f:A (1.094) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235478 4j9f:C (1.094) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235479 4j9f:E (1.094) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235480 4j9g:A (1.8) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235481 4j9g:C (1.8) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235482 4j9g:E (1.8) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235483 4j9h:A (1.7) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235484 4j9h:B (1.7) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235485 4j9h:C (1.7) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235486 4j9h:D (1.7) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235487 4j9h:E (1.7) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235488 4j9h:F (1.7) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235489 4j9i:A (2.2) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235490 4j9i:C (2.2) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235491 4j9i:E (2.2) BS01 peptide 2.7.10.2 N/A P00519 N/A
    235492 4j9k:A (2.03) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235493 4j9k:A (2.03) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235494 4j9k:A (2.03) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235495 4j9k:A (2.03) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235496 4j9k:A (2.03) BS05 XG4 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235497 4j9k:A (2.03) BS06 XG4 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235498 4j9l:A (1.85) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235499 4j9l:A (1.85) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235500 4j9l:A (1.85) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235501 4j9l:A (1.85) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235502 4j9l:A (1.85) BS05 XG4 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235503 4j9m:A (2.25) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235504 4j9m:A (2.25) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235505 4j9m:A (2.25) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235506 4j9m:A (2.25) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235507 4j9m:A (2.25) BS05 XG4 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235508 4j9n:A (1.956) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235509 4j9n:A (1.956) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235510 4j9n:A (1.956) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235511 4j9n:A (1.956) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235512 4j9n:A (1.956) BS05 XG4 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235513 4j9o:A (2.597) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235514 4j9o:A (2.597) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235515 4j9o:A (2.597) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235516 4j9o:A (2.597) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235517 4j9o:A (2.597) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235518 4j9p:A (2.3) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235519 4j9p:A (2.3) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235520 4j9q:A (1.96) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235521 4j9q:A (1.96) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235522 4j9q:A (1.96) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235523 4j9r:A (2.35) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235524 4j9r:A (2.35) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235525 4j9s:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235526 4j9s:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    235527 4j9u:C (3.8) BS01 TBR ? GO:0005267 ... Q87TN7 23598339
    235528 4j9u:D (3.8) BS01 TBR ? GO:0005267 ... Q87TN7 23598339
    235529 4j9u:E (3.8) BS01 TBR ? GO:0005886 ... Q87KD2 23598339
    235530 4j9u:E (3.8) BS02 NAD ? GO:0005886 ... Q87KD2 23598339
    235531 4j9u:E (3.8) BS03 TBR ? GO:0005886 ... Q87KD2 23598339
    235532 4j9u:F (3.8) BS01 NAD ? GO:0005886 ... Q87KD2 23598339
    235533 4j9u:F (3.8) BS02 TBR ? GO:0005886 ... Q87KD2 23598339
    235534 4j9u:F (3.8) BS03 TBR ? GO:0005886 ... Q87KD2 23598339
    235535 4j9u:G (3.8) BS01 TBR ? GO:0005886 ... Q87KD2 23598339
    235536 4j9u:G (3.8) BS02 NAD ? GO:0005886 ... Q87KD2 23598339
    235537 4j9u:G (3.8) BS03 TBR ? GO:0005886 ... Q87KD2 23598339
    235538 4j9u:H (3.8) BS01 TBR ? GO:0005886 ... Q87KD2 23598339
    235539 4j9u:H (3.8) BS02 NAD ? GO:0005886 ... Q87KD2 23598339
    235540 4j9u:H (3.8) BS03 TBR ? GO:0005886 ... Q87KD2 23598339
    235541 4j9v:A (3.051) BS01 AGS ? GO:0005886 ... Q87KD2 23598339
    235542 4j9v:A (3.051) BS02 AGS ? GO:0005886 ... Q87KD2 23598339
    235543 4j9v:A (3.051) BS03 MG ? GO:0005886 ... Q87KD2 23598339
    235544 4j9v:B (3.051) BS01 MG ? GO:0005886 ... Q87KD2 23598339
    235545 4j9v:B (3.051) BS02 AGS ? GO:0005886 ... Q87KD2 23598339
    235546 4j9v:B (3.051) BS03 AGS ? GO:0005886 ... Q87KD2 23598339
    235547 4j9w:A (1.6) BS01 PYC 5.1.1.8 GO:0047580 ... Q4KGU2 N/A
    235548 4j9w:B (1.6) BS01 PYC 5.1.1.8 GO:0047580 ... Q4KGU2 N/A
    235549 4j9x:A (1.7) BS01 HYP 5.1.1.8 GO:0047580 ... Q4KGU2 N/A
    235550 4j9x:B (1.7) BS01 HYP 5.1.1.8 GO:0047580 ... Q4KGU2 N/A
    235551 4j9y:R (1.51) BS01 CA ? GO:0000785 ... P0DP29 23487779
    235552 4j9y:R (1.51) BS02 CA ? GO:0000785 ... P0DP29 23487779
    235553 4j9z:B (1.66) BS01 1KP ? GO:0005516 ... P70604 23487779
    235554 4j9z:R (1.66) BS01 1KP ? GO:0000785 ... P0DP29 23487779
    235555 4j9z:R (1.66) BS02 CA ? GO:0000785 ... P0DP29 23487779
    235556 4j9z:R (1.66) BS03 CA ? GO:0000785 ... P0DP29 23487779
    235557 4ja1:A (1.96) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    235558 4ja1:A (1.96) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    235559 4ja1:A (1.96) BS03 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    235560 4ja1:A (1.96) BS04 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    235561 4ja1:A (1.96) BS05 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    235562 4ja1:A (1.96) BS06 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    235563 4ja1:B (1.96) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    235564 4ja1:B (1.96) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 23660647
    235565 4ja1:B (1.96) BS03 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    235566 4ja1:B (1.96) BS04 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    235567 4ja1:B (1.96) BS05 CA 3.4.24.17 GO:0004222 ... P08254 23660647
    235568 4ja1:B (1.96) BS06 NGH 3.4.24.17 GO:0004222 ... P08254 23660647 BindingDB: Ki=132nM, IC50=6500nM
    235569 4ja1:B (1.96) BS07 PT 3.4.24.17 GO:0004222 ... P08254 23660647
    235570 4ja2:A (1.79) BS01 MG ? GO:0000156 ... Q9WYT9 23954504
    235571 4ja7:A (2.0) BS01 MG 3.1.3.16 GO:0001933 ... P53042 26182372
    235572 4ja7:A (2.0) BS02 MG 3.1.3.16 GO:0001933 ... P53042 26182372
    235573 4ja8:A (1.55) BS01 NDP 1.1.1.42 GO:0000287 ... P48735 23558173
    235574 4ja8:A (1.55) BS02 1K9 1.1.1.42 GO:0000287 ... P48735 23558173 BindingDB: IC50=60nM
    235575 4ja8:A (1.55) BS03 CA 1.1.1.42 GO:0000287 ... P48735 23558173
    235576 4ja8:B (1.55) BS01 1K9 1.1.1.42 GO:0000287 ... P48735 23558173 BindingDB: IC50=60nM
    235577 4ja8:B (1.55) BS02 NDP 1.1.1.42 GO:0000287 ... P48735 23558173
    235578 4ja8:B (1.55) BS03 CA 1.1.1.42 GO:0000287 ... P48735 23558173
    235579 4ja9:A (2.3) BS01 MG 3.1.3.16 GO:0001933 ... P53042 26182372
    235580 4ja9:A (2.3) BS02 MG 3.1.3.16 GO:0001933 ... P53042 26182372
    235581 4jaa:A (2.39) BS01 peptide 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 N/A
    235582 4jaa:A (2.39) BS02 ZN 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 N/A
    235583 4jac:A (1.934) BS01 HEM ? GO:0019825 ... Q9NAV8 23792762
    235584 4jac:A (1.934) BS02 AZI ? GO:0019825 ... Q9NAV8 23792762
    235585 4jac:B (1.934) BS01 HEM ? GO:0019825 ... Q9NAV8 23792762
    235586 4jac:B (1.934) BS02 AZI ? GO:0019825 ... Q9NAV8 23792762
    235587 4jac:B (1.934) BS03 AZI ? GO:0019825 ... Q9NAV8 23792762
    235588 4jae:A (2.7) BS01 CMC 2.3.3.16 GO:0005515 ... P0ABH7 23954305
    235589 4jae:B (2.7) BS01 CMC 2.3.3.16 GO:0005515 ... P0ABH7 23954305
    235590 4jaf:A (2.3) BS01 NAI 2.3.3.16 GO:0005515 ... P0ABH7 23954305
    235591 4jaf:B (2.3) BS01 NAI 2.3.3.16 GO:0005515 ... P0ABH7 23954305
    235592 4jag:A (2.1) BS01 OAA 2.3.3.16 GO:0005515 ... P0ABH7 23954305
    235593 4jag:B (2.1) BS01 OAA 2.3.3.16 GO:0005515 ... P0ABH7 23954305
    235594 4jai:A (3.2) BS01 XU2 2.7.11.1 GO:0000212 ... O14965 23570792 BindingDB: IC50=4.0nM
    235595 4jaj:A (2.7) BS01 XU1 2.7.11.1 GO:0000212 ... O14965 23570792 BindingDB: IC50=5540nM
    235596 4jal:A (2.0) BS01 SAH 2.1.1.207 GO:0001510 ... P0AGJ7 23804755
    235597 4jal:B (2.0) BS01 SAH 2.1.1.207 GO:0001510 ... P0AGJ7 23804755
    235598 4jao:B (2.05) BS01 JAO 2.3.1.- GO:0006633 ... P9WPF3 23615910
    235599 4jao:C (2.05) BS01 JAO 2.3.1.- GO:0006633 ... P9WPF3 23615910
    235600 4jap:A (1.833) BS01 14U 2.3.1.- GO:0006633 ... P9WPF3 23615910

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).