SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    236201 4ji3:T (3.35) BS01 rna ? GO:0003723 ... P80380 24152548
    236202 4ji4:B (3.692) BS01 rna ? GO:0003735 ... P80371 24152548
    236203 4ji4:C (3.692) BS01 rna ? GO:0003676 ... P80372 24152548
    236204 4ji4:C (3.692) BS02 MG ? GO:0003676 ... P80372 24152548
    236205 4ji4:D (3.692) BS01 rna ? GO:0003723 ... P80373 24152548
    236206 4ji4:D (3.692) BS02 MG ? GO:0003723 ... P80373 24152548
    236207 4ji4:E (3.692) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    236208 4ji4:F (3.692) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    236209 4ji4:G (3.692) BS01 rna ? GO:0000049 ... P17291 24152548
    236210 4ji4:H (3.692) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    236211 4ji4:I (3.692) BS01 rna ? GO:0003723 ... P80374 24152548
    236212 4ji4:J (3.692) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    236213 4ji4:J (3.692) BS02 MG ? GO:0000049 ... Q5SHN7 24152548
    236214 4ji4:K (3.692) BS01 rna ? GO:0003735 ... P80376 24152548
    236215 4ji4:L (3.692) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    236216 4ji4:M (3.692) BS01 rna ? GO:0000049 ... P80377 24152548
    236217 4ji4:N (3.692) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    236218 4ji4:N (3.692) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    236219 4ji4:O (3.692) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    236220 4ji4:P (3.692) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    236221 4ji4:Q (3.692) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    236222 4ji4:Q (3.692) BS02 MG ? GO:0003735 ... P0DOY7 24152548
    236223 4ji4:R (3.692) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    236224 4ji4:S (3.692) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    236225 4ji4:S (3.692) BS02 MG ? GO:0000028 ... Q5SHP2 24152548
    236226 4ji4:T (3.692) BS01 rna ? GO:0003723 ... P80380 24152548
    236227 4ji5:B (3.85) BS01 rna ? GO:0003735 ... P80371 24152548
    236228 4ji5:C (3.85) BS01 rna ? GO:0003676 ... P80372 24152548
    236229 4ji5:D (3.85) BS01 rna ? GO:0003723 ... P80373 24152548
    236230 4ji5:E (3.85) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    236231 4ji5:F (3.85) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    236232 4ji5:G (3.85) BS01 rna ? GO:0000049 ... P17291 24152548
    236233 4ji5:H (3.85) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    236234 4ji5:I (3.85) BS01 rna ? GO:0003723 ... P80374 24152548
    236235 4ji5:J (3.85) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    236236 4ji5:K (3.85) BS01 rna ? GO:0003735 ... P80376 24152548
    236237 4ji5:K (3.85) BS02 MG ? GO:0003735 ... P80376 24152548
    236238 4ji5:L (3.85) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    236239 4ji5:L (3.85) BS02 MG ? GO:0000049 ... Q5SHN3 24152548
    236240 4ji5:M (3.85) BS01 rna ? GO:0000049 ... P80377 24152548
    236241 4ji5:N (3.85) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    236242 4ji5:N (3.85) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    236243 4ji5:O (3.85) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    236244 4ji5:P (3.85) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    236245 4ji5:Q (3.85) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    236246 4ji5:R (3.85) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    236247 4ji5:S (3.85) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    236248 4ji5:T (3.85) BS01 rna ? GO:0003723 ... P80380 24152548
    236249 4ji6:B (3.55) BS01 rna ? GO:0003735 ... P80371 24152548
    236250 4ji6:B (3.55) BS02 MG ? GO:0003735 ... P80371 24152548
    236251 4ji6:C (3.55) BS01 rna ? GO:0003676 ... P80372 24152548
    236252 4ji6:D (3.55) BS01 rna ? GO:0003723 ... P80373 24152548
    236253 4ji6:E (3.55) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    236254 4ji6:F (3.55) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    236255 4ji6:G (3.55) BS01 rna ? GO:0000049 ... P17291 24152548
    236256 4ji6:H (3.55) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    236257 4ji6:I (3.55) BS01 rna ? GO:0003723 ... P80374 24152548
    236258 4ji6:J (3.55) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    236259 4ji6:K (3.55) BS01 rna ? GO:0003735 ... P80376 24152548
    236260 4ji6:K (3.55) BS02 MG ? GO:0003735 ... P80376 24152548
    236261 4ji6:K (3.55) BS03 MG ? GO:0003735 ... P80376 24152548
    236262 4ji6:L (3.55) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    236263 4ji6:M (3.55) BS01 rna ? GO:0000049 ... P80377 24152548
    236264 4ji6:N (3.55) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    236265 4ji6:N (3.55) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    236266 4ji6:O (3.55) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    236267 4ji6:P (3.55) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    236268 4ji6:Q (3.55) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    236269 4ji6:R (3.55) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    236270 4ji6:S (3.55) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    236271 4ji6:T (3.55) BS01 rna ? GO:0003723 ... P80380 24152548
    236272 4ji7:B (3.5) BS01 rna ? GO:0003735 ... P80371 24152548
    236273 4ji7:B (3.5) BS02 MG ? GO:0003735 ... P80371 24152548
    236274 4ji7:C (3.5) BS01 rna ? GO:0003676 ... P80372 24152548
    236275 4ji7:D (3.5) BS01 rna ? GO:0003723 ... P80373 24152548
    236276 4ji7:D (3.5) BS02 MG ? GO:0003723 ... P80373 24152548
    236277 4ji7:E (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    236278 4ji7:F (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    236279 4ji7:G (3.5) BS01 rna ? GO:0000049 ... P17291 24152548
    236280 4ji7:H (3.5) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    236281 4ji7:I (3.5) BS01 rna ? GO:0003723 ... P80374 24152548
    236282 4ji7:J (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    236283 4ji7:K (3.5) BS01 rna ? GO:0003735 ... P80376 24152548
    236284 4ji7:K (3.5) BS02 MG ? GO:0003735 ... P80376 24152548
    236285 4ji7:L (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    236286 4ji7:M (3.5) BS01 rna ? GO:0000049 ... P80377 24152548
    236287 4ji7:N (3.5) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    236288 4ji7:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    236289 4ji7:O (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    236290 4ji7:P (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    236291 4ji7:Q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    236292 4ji7:R (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    236293 4ji7:S (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    236294 4ji7:T (3.5) BS01 rna ? GO:0003723 ... P80380 24152548
    236295 4ji8:B (3.742) BS01 rna ? GO:0003735 ... P80371 24152548
    236296 4ji8:B (3.742) BS02 MG ? GO:0003735 ... P80371 24152548
    236297 4ji8:C (3.742) BS01 rna ? GO:0003676 ... P80372 24152548
    236298 4ji8:D (3.742) BS01 rna ? GO:0003723 ... P80373 24152548
    236299 4ji8:D (3.742) BS02 ZN ? GO:0003723 ... P80373 24152548
    236300 4ji8:E (3.742) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    236301 4ji8:F (3.742) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    236302 4ji8:G (3.742) BS01 rna ? GO:0000049 ... P17291 24152548
    236303 4ji8:H (3.742) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    236304 4ji8:I (3.742) BS01 rna ? GO:0003723 ... P80374 24152548
    236305 4ji8:J (3.742) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    236306 4ji8:K (3.742) BS01 rna ? GO:0003735 ... P80376 24152548
    236307 4ji8:K (3.742) BS02 MG ? GO:0003735 ... P80376 24152548
    236308 4ji8:L (3.742) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    236309 4ji8:L (3.742) BS02 SRY ? GO:0000049 ... Q5SHN3 24152548
    236310 4ji8:M (3.742) BS01 rna ? GO:0000049 ... P80377 24152548
    236311 4ji8:N (3.742) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    236312 4ji8:N (3.742) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    236313 4ji8:O (3.742) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    236314 4ji8:P (3.742) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    236315 4ji8:Q (3.742) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    236316 4ji8:R (3.742) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    236317 4ji8:S (3.742) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    236318 4ji8:T (3.742) BS01 rna ? GO:0003723 ... P80380 24152548
    236319 4ji9:A (2.4) BS01 1M3 2.7.10.2 GO:0004672 ... O60674 23870430 BindingDB: IC50=6.0nM
    236320 4ji9:B (2.4) BS01 1M3 2.7.10.2 GO:0004672 ... O60674 23870430 BindingDB: IC50=6.0nM
    236321 4jia:A (1.85) BS01 1K3 2.7.10.2 GO:0004672 ... O60674 23870430 MOAD: Ki=0.0006uM
    BindingDB: Ki=0.600000nM, IC50=22nM
    236322 4jib:A (1.72) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 23582272
    236323 4jib:A (1.72) BS02 1L6 3.1.4.17 GO:0004114 ... O00408 23582272 MOAD: ic50=45nM
    BindingDB: IC50=45nM
    236324 4jib:B (1.72) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 23582272
    236325 4jib:B (1.72) BS02 1L6 3.1.4.17 GO:0004114 ... O00408 23582272 MOAD: ic50=45nM
    BindingDB: IC50=45nM
    236326 4jib:C (1.72) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 23582272
    236327 4jib:C (1.72) BS02 1L6 3.1.4.17 GO:0004114 ... O00408 23582272 MOAD: ic50=45nM
    BindingDB: IC50=45nM
    236328 4jib:D (1.72) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 23582272
    236329 4jib:D (1.72) BS02 1L6 3.1.4.17 GO:0004114 ... O00408 23582272 MOAD: ic50=45nM
    BindingDB: IC50=45nM
    236330 4jic:A (1.6) BS01 FMN ? GO:0005829 ... O31246 23606302
    236331 4jic:B (1.6) BS01 FMN ? GO:0005829 ... O31246 23606302
    236332 4jic:C (1.6) BS01 FMN ? GO:0005829 ... O31246 23606302
    236333 4jie:A (2.45) BS01 BMA 3.2.1.25 GO:0004553 ... A2YPH1 24100330
    236334 4jif:A (1.701) BS01 peptide ? N/A O14713 23695561
    236335 4jih:A (2.3) BS01 EPR 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 24100137 MOAD: ic50=0.33uM
    236336 4jih:A (2.3) BS02 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 24100137
    236337 4jii:X (2.2) BS01 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 24100137
    236338 4jii:X (2.2) BS02 ZST 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 24100137 MOAD: ic50=0.62uM
    BindingDB: IC50=620nM
    236339 4jij:A (1.698) BS01 peptide 3.4.24.35 GO:0004222 ... P14780 24583051
    236340 4jij:A (1.698) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    236341 4jij:A (1.698) BS03 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    236342 4jij:A (1.698) BS04 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    236343 4jij:A (1.698) BS05 CA 3.4.24.35 GO:0004222 ... P14780 24583051
    236344 4jij:B (1.698) BS01 peptide 3.4.24.35 GO:0004222 ... P14780 24583051
    236345 4jij:B (1.698) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    236346 4jij:B (1.698) BS03 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    236347 4jij:B (1.698) BS04 ZN 3.4.24.35 GO:0004222 ... P14780 24583051
    236348 4jij:B (1.698) BS05 CA 3.4.24.35 GO:0004222 ... P14780 24583051
    236349 4jik:A (1.9) BS01 1KO 2.7.11.1 GO:0000077 ... O14757 23587425 MOAD: ic50=0.018uM
    BindingDB: IC50=18nM
    236350 4jin:A (2.095) BS01 1L7 2.7.11.1 GO:0003824 ... O28471 23523885
    236351 4jip:A (2.29) BS01 FMN ? GO:0005829 ... O31246 23606302
    236352 4jip:A (2.29) BS02 HBA ? GO:0005829 ... O31246 23606302
    236353 4jiq:A (2.49) BS01 FMN ? GO:0005829 ... O31246 23606302
    236354 4jiq:A (2.49) BS02 1L5 ? GO:0005829 ... O31246 23606302 MOAD: Kd=0.73mM
    236355 4jir:A (2.0) BS01 EPR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 24100137 MOAD: ic50=0.021uM
    236356 4jir:A (2.0) BS02 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 24100137
    236357 4jit:B (2.8) BS01 3ZF 2.4.2.-
    2.4.2.22
    GO:0000287 ... P0A9M5 23927482
    236358 4jit:C (2.8) BS01 3ZF 2.4.2.-
    2.4.2.22
    GO:0000287 ... P0A9M5 23927482
    236359 4jiu:A (1.15) BS01 ZN ? N/A Q9V1Y2 23733187
    236360 4jiv:C (1.903) BS01 ELA 3.2.1.17 N/A P16009 23925114
    236361 4jiv:D (1.903) BS01 ZN ? N/A Q9KN60 23925114
    236362 4jiw:D (3.402) BS01 ZN ? N/A A0A0H2V7J1 23925114
    236363 4jiw:H (3.402) BS01 ZN ? N/A A0A0H2V7J1 23925114
    236364 4jiw:L (3.402) BS01 ZN ? N/A A0A0H2V7J1 23925114
    236365 4jiw:P (3.402) BS01 ZN ? N/A A0A0H2V7J1 23925114
    236366 4jix:A (2.0) BS01 ZN ? N/A Q57587 23733187
    236367 4jix:B (2.0) BS01 ZN ? N/A Q57587 23733187
    236368 4jiz:A (2.1) BS01 peptide ? N/A Q9H8S9 23579499
    236369 4jiz:A (2.1) BS02 ZN ? N/A Q9H8S9 23579499
    236370 4jj0:A (1.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    236371 4jj0:A (1.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    236372 4jj0:B (1.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    236373 4jj0:B (1.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    236374 4jj2:A (1.28) BS01 ELA 3.2.1.17 N/A P16009 26295253
    236375 4jj3:A (2.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    236376 4jj3:A (2.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    236377 4jj3:B (2.8) BS01 HEC ? GO:0016020 ... A0L9W2 24097349
    236378 4jj3:B (2.8) BS02 HEC ? GO:0016020 ... A0L9W2 24097349
    236379 4jj7:A (1.178) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 23614665
    236380 4jj8:A (2.937) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 23614665
    236381 4jj8:B (2.937) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 23614665
    236382 4jje:A (1.481) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 23614665
    236383 4jjf:A (2.2) BS01 FE9 1.12.98.2 GO:0006730 ... P32440 23873755
    236384 4jjf:A (2.2) BS02 N2I 1.12.98.2 GO:0006730 ... P32440 23873755 MOAD: Ki=10nM
    236385 4jjf:B (2.2) BS01 FE9 1.12.98.2 GO:0006730 ... P32440 23873755
    236386 4jjf:B (2.2) BS02 N2I 1.12.98.2 GO:0006730 ... P32440 23873755 MOAD: Ki=10nM
    236387 4jjg:A (2.5) BS01 FE9 1.12.98.2 GO:0006730 ... P32440 23873755
    236388 4jjg:B (2.5) BS01 FE9 1.12.98.2 GO:0006730 ... P32440 23873755
    236389 4jjg:B (2.5) BS02 IC9 1.12.98.2 GO:0006730 ... P32440 23873755
    236390 4jji:A (1.8) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 N/A
    236391 4jji:A (1.8) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 N/A
    236392 4jji:A (1.8) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 N/A
    236393 4jji:B (1.8) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 N/A
    236394 4jji:B (1.8) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 N/A
    236395 4jji:B (1.8) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 N/A
    236396 4jjj:A (1.6) BS01 BGC 3.2.1.91 GO:0004553 ... Q47NH7 24264519
    236397 4jjj:A (1.6) BS02 BGC 3.2.1.91 GO:0004553 ... Q47NH7 24264519
    236398 4jjj:A (1.6) BS03 GLC 3.2.1.91 GO:0004553 ... Q47NH7 24264519
    236399 4jjj:A (1.6) BS04 BGC 3.2.1.91 GO:0004553 ... Q47NH7 24264519
    236400 4jjj:A (1.6) BS05 BGC 3.2.1.91 GO:0004553 ... Q47NH7 24264519

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).