SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24001 1j3y:G (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    24002 1j3y:H (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    24003 1j3z:A (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    24004 1j3z:B (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    24005 1j3z:C (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    24006 1j3z:D (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    24007 1j3z:E (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    24008 1j3z:F (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    24009 1j3z:G (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    24010 1j3z:H (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    24011 1j40:A (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24012 1j40:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24013 1j40:C (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24014 1j40:C (1.45) BS02 HNI ? GO:0004601 ... P69905 12773618
    24015 1j40:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24016 1j40:E (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24017 1j40:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24018 1j40:G (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24019 1j40:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24020 1j41:A (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24021 1j41:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24022 1j41:C (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24023 1j41:C (1.45) BS02 HNI ? GO:0004601 ... P69905 12773618
    24024 1j41:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24025 1j41:E (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24026 1j41:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24027 1j41:G (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    24028 1j41:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    24029 1j46:A (-1.00) BS01 dna ? N/A Q05066 11563911
    24030 1j46:A (-1.00) BS02 dna ? N/A Q05066 11563911
    24031 1j47:A (-1.00) BS01 dna ? N/A Q05066 11563911
    24032 1j47:A (-1.00) BS02 dna ? N/A Q05066 11563911
    24033 1j49:A (2.2) BS01 NAD 1.1.1.28 GO:0006089 ... P26297 12054772
    24034 1j49:B (2.2) BS01 NAD 1.1.1.28 GO:0006089 ... P26297 12054772
    24035 1j4h:A (1.8) BS01 SUB 5.2.1.8 GO:0003007 ... P62942 14581219
    24036 1j4i:A (1.8) BS01 TST 5.2.1.8 GO:0003007 ... P62942 14581219
    24037 1j4j:A (2.55) BS01 ACO 2.3.1.- GO:0016747 ... P16966 12527305
    24038 1j4j:B (2.55) BS01 ACO 2.3.1.- GO:0016747 ... P16966 12527305
    24039 1j4k:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846568
    24040 1j4l:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846568
    24041 1j4p:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846567
    24042 1j4q:A (-1.00) BS01 peptide 2.7.12.1 N/A P22216 11846567
    24043 1j4r:A (1.8) BS01 001 5.2.1.8 GO:0003007 ... P62942 11735566 MOAD: Ki=0.019uM
    24044 1j4r:B (1.8) BS01 001 5.2.1.8 GO:0003007 ... P62942 11735566 MOAD: Ki=0.019uM
    24045 1j4r:D (1.8) BS01 001 5.2.1.8 GO:0003007 ... P62942 11735566 MOAD: Ki=0.019uM
    24046 1j4u:A (2.9) BS01 MMA ? GO:0005536 ... Q7M1T4 11902840
    24047 1j4u:B (2.9) BS01 MMA ? GO:0005536 ... Q7M1T4 11902840
    24048 1j4u:C (2.9) BS01 MMA ? GO:0005536 ... Q7M1T4 11902840
    24049 1j4u:D (2.9) BS01 MMA ? GO:0005536 ... Q7M1T4 11902840
    24050 1j4w:A (-1.00) BS01 dna ? GO:0003676 ... Q96AE4 11875576
    24051 1j4x:A (2.75) BS01 peptide 3.1.3.16
    3.1.3.48
    GO:0001772 ... P51452 11863439
    24052 1j51:A (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    24053 1j51:A (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    24054 1j51:B (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    24055 1j51:B (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    24056 1j51:C (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    24057 1j51:C (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    24058 1j51:D (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    24059 1j52:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    24060 1j53:A (1.8) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    24061 1j53:A (1.8) BS02 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    24062 1j53:A (1.8) BS03 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    24063 1j54:A (1.7) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    24064 1j54:A (1.7) BS02 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    24065 1j55:A (2.0) BS01 CA ? GO:0000287 ... P25815 12507480
    24066 1j55:A (2.0) BS02 CA ? GO:0000287 ... P25815 12507480
    24067 1j56:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    24068 1j58:A (1.75) BS01 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    24069 1j58:A (1.75) BS02 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    24070 1j59:A (2.5) BS01 dna ? GO:0003677 ... P0ACJ8 8757802
    24071 1j59:A (2.5) BS02 dna ? GO:0003677 ... P0ACJ8 8757802
    24072 1j59:A (2.5) BS03 CMP ? GO:0003677 ... P0ACJ8 8757802
    24073 1j59:B (2.5) BS01 dna ? GO:0003677 ... P0ACJ8 8757802
    24074 1j59:B (2.5) BS02 dna ? GO:0003677 ... P0ACJ8 8757802
    24075 1j59:B (2.5) BS03 CMP ? GO:0003677 ... P0ACJ8 8757802
    24076 1j59:B (2.5) BS04 CMP ? GO:0003677 ... P0ACJ8 8757802
    24077 1j5a:K (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    24078 1j5a:L (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599
    24079 1j5a:M (3.5) BS01 rna ? GO:0003735 ... P49228 11677599
    24080 1j5c:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    24081 1j5d:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    24082 1j5e:B (3.05) BS01 rna ? GO:0003735 ... P80371 11014182
    24083 1j5e:C (3.05) BS01 rna ? GO:0003676 ... P80372 11014182
    24084 1j5e:D (3.05) BS01 rna ? GO:0003723 ... P80373 11014182
    24085 1j5e:E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 11014182
    24086 1j5e:F (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 11014182
    24087 1j5e:G (3.05) BS01 rna ? GO:0000049 ... P17291 11014182
    24088 1j5e:H (3.05) BS01 rna ? GO:0003735 ... P0DOY9 11014182
    24089 1j5e:I (3.05) BS01 rna ? GO:0003723 ... P80374 11014182
    24090 1j5e:J (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 11014182
    24091 1j5e:K (3.05) BS01 rna ? GO:0003735 ... P80376 11014182
    24092 1j5e:L (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 11014182
    24093 1j5e:M (3.05) BS01 rna ? GO:0000049 ... P80377 11014182
    24094 1j5e:N (3.05) BS01 rna ? GO:0003735 ... P0DOY6 11014182
    24095 1j5e:N (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 11014182
    24096 1j5e:O (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 11014182
    24097 1j5e:P (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 11014182
    24098 1j5e:Q (3.05) BS01 rna ? GO:0003735 ... P0DOY7 11014182
    24099 1j5e:R (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 11014182
    24100 1j5e:S (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 11014182
    24101 1j5e:T (3.05) BS01 rna ? GO:0003723 ... P80380 11014182
    24102 1j5i:A (-1.00) BS01 NCZ ? GO:0003677 ... P0A3R9 12269815
    24103 1j5k:A (-1.00) BS01 dna ? GO:0003676 ... P61978 12093748
    24104 1j5n:A (-1.00) BS01 dna ? GO:0001195 ... P11632 12381320
    24105 1j5n:A (-1.00) BS02 dna ? GO:0001195 ... P11632 12381320
    24106 1j5o:A (3.5) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 10468556
    24107 1j5o:A (3.5) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 10468556
    24108 1j5p:A (1.9) BS01 NAD 1.4.1.21 GO:0009435 ... Q9X1X6 N/A
    24109 1j5u:A (2.0) BS01 CA ? N/A Q9X0H1 N/A
    24110 1j6t:A (-1.00) BS01 PO3 2.7.1.197 N/A P00550 12202490
    24111 1j6t:B (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 12202490
    24112 1j6v:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... Q9RRU8 11435117
    24113 1j6w:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    24114 1j6w:A (2.1) BS02 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    24115 1j6w:A (2.1) BS03 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    24116 1j6w:B (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    24117 1j6w:B (2.1) BS02 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    24118 1j6x:A (2.38) BS01 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    24119 1j6x:A (2.38) BS02 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    24120 1j6x:A (2.38) BS03 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    24121 1j6x:B (2.38) BS01 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    24122 1j6x:B (2.38) BS02 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    24123 1j6x:B (2.38) BS03 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    24124 1j6z:A (1.54) BS01 CA 3.6.4.- GO:0000287 ... P68135 11474115
    24125 1j6z:A (1.54) BS02 CA 3.6.4.- GO:0000287 ... P68135 11474115
    24126 1j6z:A (1.54) BS03 CA 3.6.4.- GO:0000287 ... P68135 11474115
    24127 1j6z:A (1.54) BS04 ADP 3.6.4.- GO:0000287 ... P68135 11474115
    24128 1j6z:A (1.54) BS05 RHO 3.6.4.- GO:0000287 ... P68135 11474115
    24129 1j70:A (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    24130 1j70:B (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    24131 1j70:C (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    24132 1j71:A (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... Q00663 9335526
    24133 1j73:B (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    24134 1j73:D (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    24135 1j75:A (1.85) BS01 dna ? GO:0003677 ... Q9QY24 11524677
    24136 1j77:A (1.5) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 11560504
    24137 1j78:B (2.31) BS01 VDY ? GO:0003779 ... P02774 11799400
    24138 1j79:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    24139 1j79:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    24140 1j79:A (1.7) BS03 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    24141 1j79:B (1.7) BS01 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    24142 1j79:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    24143 1j79:B (1.7) BS03 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    24144 1j79:B (1.7) BS04 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    24145 1j7a:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    24146 1j7b:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    24147 1j7c:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    24148 1j7e:A (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    24149 1j7e:B (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    24150 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000287 ... O33799 N/A
    24151 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000287 ... O33799 N/A
    24152 1j7k:A (1.8) BS01 ATP 3.6.4.12 GO:0000400 ... Q56313 11478862
    24153 1j7l:A (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24154 1j7l:A (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24155 1j7l:B (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24156 1j7l:B (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24157 1j7n:A (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    24158 1j7n:B (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    24159 1j7o:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    24160 1j7o:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    24161 1j7p:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    24162 1j7p:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    24163 1j7s:A (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    24164 1j7s:B (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    24165 1j7s:C (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    24166 1j7s:D (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    24167 1j7u:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24168 1j7u:A (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24169 1j7u:B (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24170 1j7u:B (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    24171 1j7w:A (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    24172 1j7w:B (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    24173 1j7w:C (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    24174 1j7w:D (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    24175 1j7y:A (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    24176 1j7y:B (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    24177 1j7y:C (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    24178 1j7y:D (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    24179 1j7z:B (2.25) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    24180 1j80:B (2.1) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    24181 1j81:B (2.2) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    24182 1j82:B (2.3) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    24183 1j83:A (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    24184 1j83:B (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    24185 1j84:A (2.02) BS01 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    24186 1j84:A (2.02) BS02 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    24187 1j84:A (2.02) BS03 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    24188 1j84:A (2.02) BS04 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    24189 1j84:A (2.02) BS05 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    24190 1j8a:A (1.21) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    24191 1j8e:A (1.85) BS01 CA ? N/A Q07954 11735395
    24192 1j8f:A (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    24193 1j8f:B (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    24194 1j8f:C (1.7) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 11427894
    24195 1j8h:A (2.4) BS01 peptide ? GO:0006955 ... P01903 11877480
    24196 1j8h:B (2.4) BS01 peptide ? GO:0006955 ... P01911 11877480
    24197 1j8h:D (2.4) BS01 peptide ? N/A P01848 11877480
    24198 1j8h:E (2.4) BS01 peptide ? N/A P01850 11877480
    24199 1j8q:A (1.35) BS01 FMN ? GO:0009055 ... P00323 12351822
    24200 1j8r:A (1.8) BS01 GAL ? GO:0007155 ... Q47450 11440716

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).