SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    242201 4l3y:A (1.95) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242202 4l3y:A (1.95) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242203 4l3y:A (1.95) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242204 4l3y:A (1.95) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242205 4l3y:A (1.95) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242206 4l3y:A (1.95) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242207 4l3y:A (1.95) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242208 4l3y:A (1.95) BS09 NO2 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242209 4l3y:A (1.95) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242210 4l3y:B (1.95) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242211 4l3y:B (1.95) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242212 4l3y:B (1.95) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242213 4l3y:B (1.95) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242214 4l3y:B (1.95) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242215 4l3y:B (1.95) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242216 4l3y:B (1.95) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242217 4l3y:B (1.95) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242218 4l3y:B (1.95) BS09 NO2 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242219 4l3y:B (1.95) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242220 4l3z:A (1.85) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242221 4l3z:A (1.85) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242222 4l3z:A (1.85) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242223 4l3z:A (1.85) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242224 4l3z:A (1.85) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242225 4l3z:A (1.85) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242226 4l3z:A (1.85) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242227 4l3z:A (1.85) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242228 4l3z:A (1.85) BS09 NO2 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242229 4l3z:A (1.85) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242230 4l3z:A (1.85) BS11 CA 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242231 4l3z:B (1.85) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242232 4l3z:B (1.85) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242233 4l3z:B (1.85) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242234 4l3z:B (1.85) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242235 4l3z:B (1.85) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242236 4l3z:B (1.85) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242237 4l3z:B (1.85) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242238 4l3z:B (1.85) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242239 4l3z:B (1.85) BS09 NO2 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242240 4l3z:B (1.85) BS10 CA 1.7.2.2 GO:0005509 ... L0DSL2 25945574
    242241 4l40:A (2.5) BS01 HEM ? GO:0004497 ... E9NSU2 24443585
    242242 4l40:A (2.5) BS02 DCR ? GO:0004497 ... E9NSU2 24443585 MOAD: Kd=0.29uM
    242243 4l41:A (2.7) BS01 CA ? GO:0004461 ... P00709 N/A
    242244 4l41:B (2.7) BS01 CA ? GO:0004461 ... P00709 N/A
    242245 4l42:A (2.8) BS01 5FI 2.7.11.1 GO:0004672 ... P23443 23731517 BindingDB: Ki=20nM, IC50=160nM
    242246 4l42:A (2.8) BS02 ZN 2.7.11.1 GO:0004672 ... P23443 23731517
    242247 4l43:A (3.0) BS01 5FI 2.7.11.1 GO:0004672 ... P23443 23731517 BindingDB: Ki=20nM, IC50=160nM
    242248 4l44:A (2.9) BS01 5FI 2.7.11.1 GO:0004672 ... P23443 23731517 BindingDB: Ki=20nM, IC50=160nM
    242249 4l44:A (2.9) BS02 ZN 2.7.11.1 GO:0004672 ... P23443 23731517
    242250 4l45:A (2.9) BS01 5FI 2.7.11.1 GO:0004672 ... P23443 23731517 BindingDB: Ki=20nM, IC50=160nM
    242251 4l46:A (3.01) BS01 5FI 2.7.11.1 GO:0004672 ... P23443 23731517 BindingDB: Ki=20nM, IC50=160nM
    242252 4l46:A (3.01) BS02 ZN 2.7.11.1 GO:0004672 ... P23443 23731517
    242253 4l47:QB (3.22) BS01 rna ? GO:0003735 ... P80371 25128388
    242254 4l47:QC (3.22) BS01 rna ? GO:0003676 ... P80372 25128388
    242255 4l47:QD (3.22) BS01 rna ? GO:0003723 ... P80373 25128388
    242256 4l47:QD (3.22) BS02 ZN ? GO:0003723 ... P80373 25128388
    242257 4l47:QE (3.22) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    242258 4l47:QF (3.22) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    242259 4l47:QF (3.22) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    242260 4l47:QG (3.22) BS01 rna ? GO:0000049 ... P17291 25128388
    242261 4l47:QH (3.22) BS01 rna N/A GO:0003735 ... P0DOY9 25128388
    242262 4l47:QH (3.22) BS02 MG N/A GO:0003735 ... P0DOY9 25128388
    242263 4l47:QI (3.22) BS01 rna ? GO:0003723 ... P80374 25128388
    242264 4l47:QI (3.22) BS02 rna ? GO:0003723 ... P80374 25128388
    242265 4l47:QJ (3.22) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    242266 4l47:QJ (3.22) BS02 rna ? GO:0000049 ... Q5SHN7 25128388
    242267 4l47:QK (3.22) BS01 rna ? GO:0003735 ... P80376 25128388
    242268 4l47:QL (3.22) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    242269 4l47:QM (3.22) BS01 rna ? GO:0000049 ... P80377 25128388
    242270 4l47:QM (3.22) BS02 rna ? GO:0000049 ... P80377 25128388
    242271 4l47:QM (3.22) BS03 MG ? GO:0000049 ... P80377 25128388
    242272 4l47:QN (3.22) BS01 rna N/A GO:0003735 ... P0DOY6 25128388
    242273 4l47:QN (3.22) BS02 ZN N/A GO:0003735 ... P0DOY6 25128388
    242274 4l47:QO (3.22) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    242275 4l47:QO (3.22) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    242276 4l47:QP (3.22) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    242277 4l47:QQ (3.22) BS01 rna N/A GO:0003735 ... P0DOY7 25128388
    242278 4l47:QR (3.22) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    242279 4l47:QS (3.22) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    242280 4l47:QT (3.22) BS01 rna ? GO:0003723 ... P80380 25128388
    242281 4l47:R0 (3.22) BS01 rna ? GO:0003735 ... P60493 25128388
    242282 4l47:R0 (3.22) BS02 rna ? GO:0003735 ... P60493 25128388
    242283 4l47:R0 (3.22) BS03 rna ? GO:0003735 ... P60493 25128388
    242284 4l47:R1 (3.22) BS01 rna ? GO:0003735 ... P60494 25128388
    242285 4l47:R2 (3.22) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    242286 4l47:R3 (3.22) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    242287 4l47:R4 (3.22) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    242288 4l47:R4 (3.22) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    242289 4l47:R5 (3.22) BS01 rna ? GO:0003735 ... P80339 25128388
    242290 4l47:R6 (3.22) BS01 rna ? GO:0003735 ... P35871 25128388
    242291 4l47:R7 (3.22) BS01 rna ? GO:0003735 ... P80340 25128388
    242292 4l47:R8 (3.22) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    242293 4l47:R9 (3.22) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    242294 4l47:RD (3.22) BS01 rna ? GO:0002181 ... P60405 25128388
    242295 4l47:RD (3.22) BS02 rna ? GO:0002181 ... P60405 25128388
    242296 4l47:RD (3.22) BS03 MG ? GO:0002181 ... P60405 25128388
    242297 4l47:RD (3.22) BS04 MG ? GO:0002181 ... P60405 25128388
    242298 4l47:RE (3.22) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    242299 4l47:RF (3.22) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    242300 4l47:RG (3.22) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    242301 4l47:RG (3.22) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    242302 4l47:RH (3.22) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    242303 4l47:RI (3.22) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    242304 4l47:RN (3.22) BS01 rna ? GO:0003729 ... P60488 25128388
    242305 4l47:RO (3.22) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    242306 4l47:RO (3.22) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    242307 4l47:RP (3.22) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    242308 4l47:RP (3.22) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    242309 4l47:RQ (3.22) BS01 rna ? GO:0003735 ... P60489 25128388
    242310 4l47:RQ (3.22) BS02 rna ? GO:0003735 ... P60489 25128388
    242311 4l47:RR (3.22) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    242312 4l47:RS (3.22) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    242313 4l47:RS (3.22) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    242314 4l47:RT (3.22) BS01 rna ? GO:0003735 ... P60490 25128388
    242315 4l47:RT (3.22) BS02 rna ? GO:0003735 ... P60490 25128388
    242316 4l47:RU (3.22) BS01 rna ? GO:0000027 ... P60491 25128388
    242317 4l47:RV (3.22) BS01 rna ? GO:0003723 ... P60492 25128388
    242318 4l47:RW (3.22) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    242319 4l47:RX (3.22) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    242320 4l47:RY (3.22) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    242321 4l47:RZ (3.22) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    242322 4l47:RZ (3.22) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    242323 4l47:XB (3.22) BS01 rna ? GO:0003735 ... P80371 25128388
    242324 4l47:XC (3.22) BS01 rna ? GO:0003676 ... P80372 25128388
    242325 4l47:XD (3.22) BS01 rna ? GO:0003723 ... P80373 25128388
    242326 4l47:XD (3.22) BS02 ZN ? GO:0003723 ... P80373 25128388
    242327 4l47:XE (3.22) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    242328 4l47:XF (3.22) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    242329 4l47:XG (3.22) BS01 rna ? GO:0000049 ... P17291 25128388
    242330 4l47:XH (3.22) BS01 rna N/A GO:0003735 ... P0DOY9 25128388
    242331 4l47:XI (3.22) BS01 rna ? GO:0003723 ... P80374 25128388
    242332 4l47:XI (3.22) BS02 rna ? GO:0003723 ... P80374 25128388
    242333 4l47:XJ (3.22) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    242334 4l47:XK (3.22) BS01 rna ? GO:0003735 ... P80376 25128388
    242335 4l47:XL (3.22) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    242336 4l47:XM (3.22) BS01 rna ? GO:0000049 ... P80377 25128388
    242337 4l47:XM (3.22) BS02 rna ? GO:0000049 ... P80377 25128388
    242338 4l47:XM (3.22) BS03 MG ? GO:0000049 ... P80377 25128388
    242339 4l47:XM (3.22) BS04 MG ? GO:0000049 ... P80377 25128388
    242340 4l47:XN (3.22) BS01 rna N/A GO:0003735 ... P0DOY6 25128388
    242341 4l47:XN (3.22) BS02 ZN N/A GO:0003735 ... P0DOY6 25128388
    242342 4l47:XO (3.22) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    242343 4l47:XO (3.22) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    242344 4l47:XP (3.22) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    242345 4l47:XQ (3.22) BS01 rna N/A GO:0003735 ... P0DOY7 25128388
    242346 4l47:XR (3.22) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    242347 4l47:XS (3.22) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    242348 4l47:XT (3.22) BS01 rna ? GO:0003723 ... P80380 25128388
    242349 4l47:Y0 (3.22) BS01 rna ? GO:0003735 ... P60493 25128388
    242350 4l47:Y0 (3.22) BS02 rna ? GO:0003735 ... P60493 25128388
    242351 4l47:Y0 (3.22) BS03 rna ? GO:0003735 ... P60493 25128388
    242352 4l47:Y1 (3.22) BS01 rna ? GO:0003735 ... P60494 25128388
    242353 4l47:Y2 (3.22) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    242354 4l47:Y3 (3.22) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    242355 4l47:Y4 (3.22) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    242356 4l47:Y5 (3.22) BS01 rna ? GO:0003735 ... P80339 25128388
    242357 4l47:Y6 (3.22) BS01 rna ? GO:0003735 ... P35871 25128388
    242358 4l47:Y7 (3.22) BS01 rna ? GO:0003735 ... P80340 25128388
    242359 4l47:Y8 (3.22) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    242360 4l47:Y9 (3.22) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    242361 4l47:Y9 (3.22) BS02 ZN ? GO:0003735 ... Q5SHR2 25128388
    242362 4l47:YD (3.22) BS01 rna ? GO:0002181 ... P60405 25128388
    242363 4l47:YD (3.22) BS02 MG ? GO:0002181 ... P60405 25128388
    242364 4l47:YE (3.22) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    242365 4l47:YF (3.22) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    242366 4l47:YG (3.22) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    242367 4l47:YG (3.22) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    242368 4l47:YH (3.22) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    242369 4l47:YI (3.22) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    242370 4l47:YI (3.22) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    242371 4l47:YN (3.22) BS01 rna ? GO:0003729 ... P60488 25128388
    242372 4l47:YO (3.22) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    242373 4l47:YO (3.22) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    242374 4l47:YP (3.22) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    242375 4l47:YQ (3.22) BS01 rna ? GO:0003735 ... P60489 25128388
    242376 4l47:YQ (3.22) BS02 rna ? GO:0003735 ... P60489 25128388
    242377 4l47:YR (3.22) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    242378 4l47:YS (3.22) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    242379 4l47:YS (3.22) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    242380 4l47:YT (3.22) BS01 rna ? GO:0003735 ... P60490 25128388
    242381 4l47:YT (3.22) BS02 rna ? GO:0003735 ... P60490 25128388
    242382 4l47:YU (3.22) BS01 rna ? GO:0000027 ... P60491 25128388
    242383 4l47:YV (3.22) BS01 rna ? GO:0003723 ... P60492 25128388
    242384 4l47:YW (3.22) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    242385 4l47:YX (3.22) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    242386 4l47:YX (3.22) BS02 MG ? GO:0003735 ... Q5SHP0 25128388
    242387 4l47:YY (3.22) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    242388 4l47:YZ (3.22) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    242389 4l47:YZ (3.22) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    242390 4l48:A (2.1) BS01 BGC 3.2.1.4 N/A A5CLK3 N/A
    242391 4l48:A (2.1) BS02 BGC 3.2.1.4 N/A A5CLK3 N/A
    242392 4l48:A (2.1) BS03 BGC 3.2.1.4 N/A A5CLK3 N/A
    242393 4l48:A (2.1) BS04 BGC 3.2.1.4 N/A A5CLK3 N/A
    242394 4l48:C (2.1) BS01 BGC 3.2.1.4 N/A A5CLK3 N/A
    242395 4l48:C (2.1) BS02 BGC 3.2.1.4 N/A A5CLK3 N/A
    242396 4l48:C (2.1) BS03 BGC 3.2.1.4 N/A A5CLK3 N/A
    242397 4l49:A (2.128) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 23865948
    242398 4l49:A (2.128) BS02 CAM 1.14.15.1 GO:0004497 ... P00183 23865948
    242399 4l4a:A (2.103) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 23865948
    242400 4l4a:A (2.103) BS02 CAM 1.14.15.1 GO:0004497 ... P00183 23865948

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).