SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    243001 4l71:RP (3.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    243002 4l71:RP (3.9) BS03 MG ? GO:0003735 ... Q5SHQ7 25128388
    243003 4l71:RQ (3.9) BS01 rna ? GO:0003735 ... P60489 25128388
    243004 4l71:RQ (3.9) BS02 rna ? GO:0003735 ... P60489 25128388
    243005 4l71:RR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    243006 4l71:RS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    243007 4l71:RS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    243008 4l71:RT (3.9) BS01 rna ? GO:0003735 ... P60490 25128388
    243009 4l71:RT (3.9) BS02 rna ? GO:0003735 ... P60490 25128388
    243010 4l71:RU (3.9) BS01 rna ? GO:0000027 ... P60491 25128388
    243011 4l71:RV (3.9) BS01 rna ? GO:0003723 ... P60492 25128388
    243012 4l71:RW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    243013 4l71:RX (3.9) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    243014 4l71:RY (3.9) BS01 rna ? GO:0003723 ... Q72I15 25128388
    243015 4l71:RZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    243016 4l71:RZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    243017 4l71:XB (3.9) BS01 rna ? GO:0003735 ... P80371 25128388
    243018 4l71:XC (3.9) BS01 rna ? GO:0003676 ... P80372 25128388
    243019 4l71:XD (3.9) BS01 rna ? GO:0003723 ... P80373 25128388
    243020 4l71:XD (3.9) BS02 ZN ? GO:0003723 ... P80373 25128388
    243021 4l71:XE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    243022 4l71:XF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    243023 4l71:XG (3.9) BS01 rna ? GO:0000049 ... P17291 25128388
    243024 4l71:XH (3.9) BS01 rna ? GO:0003735 ... P0DOY9 25128388
    243025 4l71:XI (3.9) BS01 rna ? GO:0003723 ... P80374 25128388
    243026 4l71:XI (3.9) BS02 rna ? GO:0003723 ... P80374 25128388
    243027 4l71:XJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    243028 4l71:XK (3.9) BS01 rna ? GO:0003735 ... P80376 25128388
    243029 4l71:XL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    243030 4l71:XM (3.9) BS01 rna ? GO:0000049 ... P80377 25128388
    243031 4l71:XM (3.9) BS02 rna ? GO:0000049 ... P80377 25128388
    243032 4l71:XM (3.9) BS03 rna ? GO:0000049 ... P80377 25128388
    243033 4l71:XM (3.9) BS04 MG ? GO:0000049 ... P80377 25128388
    243034 4l71:XM (3.9) BS05 MG ? GO:0000049 ... P80377 25128388
    243035 4l71:XN (3.9) BS01 rna ? GO:0003735 ... P0DOY6 25128388
    243036 4l71:XN (3.9) BS02 ZN ? GO:0003735 ... P0DOY6 25128388
    243037 4l71:XO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    243038 4l71:XO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    243039 4l71:XP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    243040 4l71:XQ (3.9) BS01 rna ? GO:0003735 ... P0DOY7 25128388
    243041 4l71:XR (3.9) BS01 rna ? GO:0003735 ... P62659 25128388
    243042 4l71:XS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    243043 4l71:XT (3.9) BS01 rna ? GO:0003723 ... P80380 25128388
    243044 4l71:Y0 (3.9) BS01 rna ? GO:0003735 ... P60493 25128388
    243045 4l71:Y0 (3.9) BS02 rna ? GO:0003735 ... P60493 25128388
    243046 4l71:Y0 (3.9) BS03 rna ? GO:0003735 ... P60493 25128388
    243047 4l71:Y1 (3.9) BS01 rna ? GO:0003735 ... P60494 25128388
    243048 4l71:Y2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    243049 4l71:Y3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    243050 4l71:Y3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    243051 4l71:Y4 (3.9) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    243052 4l71:Y5 (3.9) BS01 rna ? GO:0003735 ... P80339 25128388
    243053 4l71:Y6 (3.9) BS01 rna ? GO:0003735 ... P35871 25128388
    243054 4l71:Y7 (3.9) BS01 rna ? GO:0003735 ... P80340 25128388
    243055 4l71:Y8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    243056 4l71:Y9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    243057 4l71:Y9 (3.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25128388
    243058 4l71:YD (3.9) BS01 rna ? GO:0002181 ... P60405 25128388
    243059 4l71:YE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    243060 4l71:YF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    243061 4l71:YG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    243062 4l71:YG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    243063 4l71:YH (3.9) BS01 rna ? GO:0002181 ... P0DOY8 25128388
    243064 4l71:YI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    243065 4l71:YI (3.9) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    243066 4l71:YN (3.9) BS01 rna ? GO:0003729 ... P60488 25128388
    243067 4l71:YO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    243068 4l71:YO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    243069 4l71:YP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    243070 4l71:YP (3.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    243071 4l71:YQ (3.9) BS01 rna ? GO:0003735 ... P60489 25128388
    243072 4l71:YQ (3.9) BS02 rna ? GO:0003735 ... P60489 25128388
    243073 4l71:YR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    243074 4l71:YS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    243075 4l71:YS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    243076 4l71:YT (3.9) BS01 rna ? GO:0003735 ... P60490 25128388
    243077 4l71:YT (3.9) BS02 rna ? GO:0003735 ... P60490 25128388
    243078 4l71:YU (3.9) BS01 rna ? GO:0000027 ... P60491 25128388
    243079 4l71:YV (3.9) BS01 rna ? GO:0003723 ... P60492 25128388
    243080 4l71:YW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    243081 4l71:YX (3.9) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    243082 4l71:YX (3.9) BS02 MG ? GO:0003735 ... Q5SHP0 25128388
    243083 4l71:YY (3.9) BS01 rna ? GO:0003723 ... Q72I15 25128388
    243084 4l71:YZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    243085 4l71:YZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    243086 4l73:A (2.5) BS01 CA ? GO:0006813 ... O27564 24126388
    243087 4l73:A (2.5) BS02 CA ? GO:0006813 ... O27564 24126388
    243088 4l73:A (2.5) BS03 CA ? GO:0006813 ... O27564 24126388
    243089 4l73:B (2.5) BS01 CA ? GO:0006813 ... O27564 24126388
    243090 4l73:B (2.5) BS02 CA ? GO:0006813 ... O27564 24126388
    243091 4l74:A (1.841) BS01 CA ? GO:0006813 ... O27564 24126388
    243092 4l74:B (1.841) BS01 CA ? GO:0006813 ... O27564 24126388
    243093 4l75:A (2.393) BS01 CA ? GO:0006813 ... O27564 24126388
    243094 4l75:B (2.393) BS01 CA ? GO:0006813 ... O27564 24126388
    243095 4l75:C (2.393) BS01 CA ? GO:0006813 ... O27564 24126388
    243096 4l75:D (2.393) BS01 CA ? GO:0006813 ... O27564 24126388
    243097 4l75:E (2.393) BS01 CA ? GO:0006813 ... O27564 24126388
    243098 4l75:F (2.393) BS01 CA ? GO:0006813 ... O27564 24126388
    243099 4l76:A (2.992) BS01 CA ? GO:0006813 ... O27564 24126388
    243100 4l76:A (2.992) BS02 CA ? GO:0006813 ... O27564 24126388
    243101 4l76:B (2.992) BS01 CA ? GO:0006813 ... O27564 24126388
    243102 4l76:B (2.992) BS02 CA ? GO:0006813 ... O27564 24126388
    243103 4l76:C (2.992) BS01 CA ? GO:0006813 ... O27564 24126388
    243104 4l76:C (2.992) BS02 CA ? GO:0006813 ... O27564 24126388
    243105 4l76:D (2.992) BS01 CA ? GO:0006813 ... O27564 24126388
    243106 4l76:D (2.992) BS02 CA ? GO:0006813 ... O27564 24126388
    243107 4l76:D (2.992) BS03 CA ? GO:0006813 ... O27564 24126388
    243108 4l76:E (2.992) BS01 CA ? GO:0006813 ... O27564 24126388
    243109 4l76:E (2.992) BS02 CA ? GO:0006813 ... O27564 24126388
    243110 4l76:F (2.992) BS01 CA ? GO:0006813 ... O27564 24126388
    243111 4l76:F (2.992) BS02 CA ? GO:0006813 ... O27564 24126388
    243112 4l77:A (1.379) BS01 HEM 1.14.14.133 GO:0004497 ... Q8VQF6 23829586
    243113 4l77:B (1.379) BS01 HEM 1.14.14.133 GO:0004497 ... Q8VQF6 23829586
    243114 4l78:A (2.18) BS01 ADP 6.3.5.3 GO:0004642 ... P74881 24223728
    243115 4l78:A (2.18) BS02 MG 6.3.5.3 GO:0004642 ... P74881 24223728
    243116 4l78:A (2.18) BS03 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    243117 4l78:A (2.18) BS04 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    243118 4l78:A (2.18) BS05 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    243119 4l78:A (2.18) BS06 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    243120 4l78:A (2.18) BS07 XE 6.3.5.3 GO:0004642 ... P74881 24223728
    243121 4l79:A (2.3) BS01 MG ? GO:0003774 ... Q05096 24469830
    243122 4l7b:B (2.41) BS01 1VV ? N/A Q14145 24504667 MOAD: ic50=2.3uM
    BindingDB: Kd=1900nM, IC50=792nM, Ki=560nM, EC50=26000nM
    243123 4l7c:A (2.4) BS01 1VW ? N/A Q14145 24504667 MOAD: ic50=7.4uM
    243124 4l7c:B (2.4) BS01 1VW ? N/A Q14145 24504667 MOAD: ic50=7.4uM
    243125 4l7c:C (2.4) BS01 1VW ? N/A Q14145 24504667 MOAD: ic50=7.4uM
    243126 4l7d:A (2.25) BS01 1VX ? N/A Q14145 24504667 MOAD: ic50=0.75uM
    BindingDB: IC50=750nM
    243127 4l7d:B (2.25) BS01 1VX ? N/A Q14145 24504667 MOAD: ic50=0.75uM
    BindingDB: IC50=750nM
    243128 4l7d:C (2.25) BS01 1VX ? N/A Q14145 24504667 MOAD: ic50=0.75uM
    BindingDB: IC50=750nM
    243129 4l7f:A (1.95) BS01 1V5 2.7.11.24 GO:0004672 ... P45983 23916259 MOAD: ic50=160nM
    243130 4l7g:A (1.38) BS01 1W0 3.4.23.46 GO:0004190 ... P56817 N/A
    243131 4l7h:A (1.85) BS01 1W1 3.4.23.46 GO:0004190 ... P56817 N/A
    243132 4l7i:A (2.189) BS01 SAM 2.5.1.6 GO:0000287 ... Q980S9 24649856
    243133 4l7i:B (2.189) BS01 SAM 2.5.1.6 GO:0000287 ... Q980S9 24649856
    243134 4l7j:A (1.651) BS01 1W2 3.4.23.46 GO:0004190 ... P56817 N/A
    243135 4l7l:A (2.1) BS01 1VA 2.4.2.- GO:0003950 ... Q9Y6F1 24188023
    243136 4l7n:A (1.8) BS01 1VB 2.4.2.- GO:0003950 ... Q9Y6F1 24188023
    243137 4l7o:A (2.0) BS01 1VD 2.4.2.- GO:0003950 ... Q9Y6F1 24188023
    243138 4l7p:A (2.3) BS01 M95 2.4.2.- GO:0003950 ... Q9Y6F1 24188023
    243139 4l7r:A (2.2) BS01 M00 2.4.2.- GO:0003950 ... Q9Y6F1 24188023
    243140 4l7s:A (2.03) BS01 G7K 2.7.10.2 GO:0004672 ... Q08881 24900590 MOAD: Ki=15.8nM
    BindingDB: Ki=16nM
    243141 4l7s:B (2.03) BS01 G7K 2.7.10.2 GO:0004672 ... Q08881 24900590 MOAD: Ki=15.8nM
    BindingDB: Ki=16nM
    243142 4l7u:A (2.8) BS01 1VC 2.4.2.- GO:0003950 ... Q9Y6F1 24188023
    243143 4l7v:A (2.05) BS01 SAH 2.1.1.77 GO:0004719 ... A5F9C1 26255776
    243144 4l7w:A (2.305) BS01 MG 3.1.3.89 GO:0002953 ... Q7Z4H3 N/A
    243145 4l7w:A (2.305) BS02 MG 3.1.3.89 GO:0002953 ... Q7Z4H3 N/A
    243146 4l7w:A (2.305) BS03 MG 3.1.3.89 GO:0002953 ... Q7Z4H3 N/A
    243147 4l7x:A (1.35) BS01 peptide ? GO:0048188 ... Q9BTC0 23831028
    243148 4l7x:A (1.35) BS02 ZN ? GO:0048188 ... Q9BTC0 23831028
    243149 4l7x:A (1.35) BS03 ZN ? GO:0048188 ... Q9BTC0 23831028
    243150 4l7y:A (1.8) BS01 MH0 ? GO:0004601 ... P69905 N/A
    243151 4l7y:B (1.8) BS01 MH0 ? GO:0004601 ... P68871 N/A
    243152 4l7y:B (1.8) BS02 IRL ? GO:0004601 ... P68871 N/A
    243153 4l7y:C (1.8) BS01 MH0 ? GO:0004601 ... P69905 N/A
    243154 4l7y:D (1.8) BS01 IRL ? GO:0004601 ... P68871 N/A
    243155 4l7y:D (1.8) BS02 MH0 ? GO:0004601 ... P68871 N/A
    243156 4l80:A (2.008) BS01 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243157 4l80:A (2.008) BS02 OXL 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243158 4l80:A (2.008) BS03 MG 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243159 4l80:A (2.008) BS04 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243160 4l80:B (2.008) BS01 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243161 4l80:B (2.008) BS02 OXL 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243162 4l80:B (2.008) BS03 MG 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243163 4l80:B (2.008) BS04 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243164 4l80:C (2.008) BS01 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243165 4l80:C (2.008) BS02 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243166 4l80:C (2.008) BS03 OXL 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243167 4l80:C (2.008) BS04 MG 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243168 4l80:D (2.008) BS01 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243169 4l80:D (2.008) BS02 OXL 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243170 4l80:D (2.008) BS03 MG 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243171 4l80:D (2.008) BS04 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243172 4l80:E (2.008) BS01 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243173 4l80:E (2.008) BS02 OXL 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243174 4l80:E (2.008) BS03 MG 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243175 4l80:E (2.008) BS04 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243176 4l80:F (2.008) BS01 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243177 4l80:F (2.008) BS02 1VU 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243178 4l80:F (2.008) BS03 OXL 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243179 4l80:F (2.008) BS04 MG 4.1.3.24
    4.1.3.25
    GO:0000287 ... S5N020 24206647
    243180 4l82:A (2.0) BS01 FMN 1.-.-.- GO:0010181 ... Q4UKE8 N/A
    243181 4l82:B (2.0) BS01 FMN 1.-.-.- GO:0010181 ... Q4UKE8 N/A
    243182 4l87:A (2.897) BS01 SSA 6.1.1.11 GO:0000049 ... P49591 24095058 BindingDB: IC50=2170nM
    243183 4l87:A (2.897) BS02 MG 6.1.1.11 GO:0000049 ... P49591 24095058
    243184 4l89:A (1.6) BS01 COA ? GO:0008080 ... Q9HV14 24003232
    243185 4l8a:A (1.2) BS01 COA ? GO:0008080 ... Q9HV14 24003232 MOAD: Kd=3.9uM
    243186 4l8a:A (1.2) BS02 1VP ? GO:0008080 ... Q9HV14 24003232
    243187 4l8b:A (2.2) BS01 peptide ? N/A P01899 24173108
    243188 4l8c:A (2.8) BS01 peptide ? N/A P01899 24173108
    243189 4l8c:C (2.8) BS01 peptide ? N/A P01899 24173108
    243190 4l8c:E (2.8) BS01 peptide ? N/A P01899 24173108
    243191 4l8c:G (2.8) BS01 peptide ? N/A P01899 24173108
    243192 4l8d:A (1.9) BS01 peptide ? N/A P01899 24173108
    243193 4l8d:C (1.9) BS01 peptide ? N/A P01899 24173108
    243194 4l8e:A (1.7) BS01 GSH ? GO:0015036 ... D3VKV1 N/A
    243195 4l8e:A (1.7) BS02 GSH ? GO:0015036 ... D3VKV1 N/A
    243196 4l8e:A (1.7) BS03 GSH ? GO:0015036 ... D3VKV1 N/A
    243197 4l8f:B (1.97) BS01 MTX 3.4.19.9 GO:0008242 ... Q6NY42 24028568
    243198 4l8f:D (1.97) BS01 MTX 3.4.19.9 GO:0008242 ... Q6NY42 24028568
    243199 4l8g:A (1.521) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 24256730
    243200 4l8h:A (2.4) BS01 rna ? GO:0003723 ... P03615 24035813

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).