SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    243401 4lbw:A (1.741) BS02 MG ? GO:0000287 ... P60338 23989163
    243402 4lbx:A (1.7) BS01 ADN ? GO:0016301 ... Q2KDX6 N/A
    243403 4lbx:A (1.7) BS02 CTN ? GO:0016301 ... Q2KDX6 N/A
    243404 4lbx:B (1.7) BS01 ADN ? GO:0016301 ... Q2KDX6 N/A
    243405 4lbx:B (1.7) BS02 CTN ? GO:0016301 ... Q2KDX6 N/A
    243406 4lby:A (2.692) BS01 GNP ? GO:0000287 ... P60338 23989163
    243407 4lby:A (2.692) BS02 MG ? GO:0000287 ... P60338 23989163
    243408 4lbz:A (2.223) BS01 GNP ? GO:0000287 ... P60338 23989163
    243409 4lbz:A (2.223) BS02 MG ? GO:0000287 ... P60338 23989163
    243410 4lc0:A (2.221) BS01 GNP ? GO:0000287 ... P60338 23989163
    243411 4lc0:A (2.221) BS02 MG ? GO:0000287 ... P60338 23989163
    243412 4lc1:A (1.8) BS01 GDP ? GO:0003924 ... C5AP93 23996001
    243413 4lc1:B (1.8) BS01 GDP ? GO:0003924 ... C5AP93 23996001
    243414 4lc4:A (1.7) BS01 ADN ? GO:0016301 ... Q2KDX6 N/A
    243415 4lc4:A (1.7) BS02 GMP ? GO:0016301 ... Q2KDX6 N/A
    243416 4lc4:B (1.7) BS01 ADN ? GO:0016301 ... Q2KDX6 N/A
    243417 4lc4:B (1.7) BS02 GMP ? GO:0016301 ... Q2KDX6 N/A
    243418 4lc5:A (1.97) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243419 4lc5:A (1.97) BS02 9MG 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243420 4lc5:B (1.97) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243421 4lc6:A (1.32) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243422 4lc6:A (1.32) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243423 4lc6:B (1.32) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243424 4lc6:B (1.32) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243425 4lc7:A (1.7) BS01 1WP 3.4.23.46 GO:0004190 ... P56817 N/A
    243426 4lc8:A (1.318) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243427 4lc8:A (1.318) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243428 4lc8:B (1.318) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243429 4lc8:B (1.318) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    243430 4lc9:A (3.4) BS01 F6P ? GO:0001678 ... Q07071 23957911
    243431 4lca:A (1.5) BS01 ADN ? GO:0016301 ... Q2KDX6 N/A
    243432 4lca:B (1.5) BS01 ADN ? GO:0016301 ... Q2KDX6 N/A
    243433 4lcc:C (3.263) BS01 1XL ? GO:0002503 ... C1ITJ8
    P01888
    24108697
    243434 4lcd:A (3.1) BS01 peptide 2.3.2.26 GO:0004842 ... P39940 23936628
    243435 4lcd:B (3.1) BS01 peptide 2.3.2.26 GO:0004842 ... P39940 23936628
    243436 4lce:A (2.38) BS01 NAD 1.1.1.- GO:0003714 ... Q13363 24657618
    243437 4lce:A (2.38) BS02 KMT 1.1.1.- GO:0003714 ... Q13363 24657618 BindingDB: Kd=1.260e+6nM
    243438 4lcf:A (1.599) BS01 ZN 3.5.1.108 GO:0005737 ... P47205 23914798
    243439 4lcf:A (1.599) BS02 1WL 3.5.1.108 GO:0005737 ... P47205 23914798
    243440 4lcf:A (1.599) BS03 ZN 3.5.1.108 GO:0005737 ... P47205 23914798
    243441 4lcg:A (1.568) BS01 ZN 3.5.1.108 GO:0005737 ... P47205 23914798
    243442 4lcg:A (1.568) BS02 ZN 3.5.1.108 GO:0005737 ... P47205 23914798
    243443 4lcg:A (1.568) BS03 1WM 3.5.1.108 GO:0005737 ... P47205 23914798
    243444 4lch:A (1.596) BS01 ZN 3.5.1.108 GO:0005737 ... P47205 23914798
    243445 4lch:A (1.596) BS02 ZN 3.5.1.108 GO:0005737 ... P47205 23914798
    243446 4lch:A (1.596) BS03 1WN 3.5.1.108 GO:0005737 ... P47205 23914798
    243447 4lcj:A (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243448 4lcj:A (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243449 4lcj:B (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243450 4lcj:B (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243451 4lcj:C (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243452 4lcj:C (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243453 4lcj:D (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243454 4lcj:D (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243455 4lcj:E (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243456 4lcj:E (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243457 4lcj:F (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243458 4lcj:F (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243459 4lcj:G (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243460 4lcj:G (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243461 4lcj:H (2.86) BS01 NAD ? GO:0003714 ... P56545 24657618
    243462 4lcj:H (2.86) BS02 KMT ? GO:0003714 ... P56545 24657618 BindingDB: IC50=300000nM, Kd=2.960e+6nM
    243463 4lck:A (3.2) BS01 rna ? GO:0003723 ... P46350 23892783
    243464 4lck:D (3.2) BS01 rna ? GO:0003723 ... P46350 23892783
    243465 4lcn:A (1.8) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243466 4lcn:A (1.8) BS02 GNG 3.5.-.- GO:0008270 ... Q82Y41 24083949 MOAD: Ka=91000M^-1
    243467 4lcn:B (1.8) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243468 4lco:A (2.7) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243469 4lco:B (2.7) BS01 6AM 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243470 4lco:B (2.7) BS02 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243471 4lcp:A (2.0) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243472 4lcp:A (2.0) BS02 6AP 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243473 4lcp:B (2.0) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243474 4lcq:A (1.81) BS01 ZN ? GO:0004157 ... Q4SMR4 24005677
    243475 4lcq:A (1.81) BS02 ZN ? GO:0004157 ... Q4SMR4 24005677
    243476 4lcq:A (1.81) BS03 URQ ? GO:0004157 ... Q4SMR4 24005677
    243477 4lcr:A (2.0) BS01 URP ? GO:0004157 ... Q4SMR4 24005677
    243478 4lcr:A (2.0) BS02 ZN ? GO:0004157 ... Q4SMR4 24005677
    243479 4lcr:A (2.0) BS03 ZN ? GO:0004157 ... Q4SMR4 24005677
    243480 4lcs:A (2.2) BS01 ZN ? GO:0004157 ... Q4SMR4 24005677
    243481 4lcs:A (2.2) BS02 ZN ? GO:0004157 ... Q4SMR4 24005677
    243482 4lcs:A (2.2) BS03 HYN ? GO:0004157 ... Q4SMR4 24005677
    243483 4lcv:C (2.0) BS01 CA ? GO:0016020 ... P70610 23994332
    243484 4lcv:C (2.0) BS02 CA ? GO:0016020 ... P70610 23994332
    243485 4lcw:A (2.4) BS01 1VY ? N/A Q95460 24101382
    243486 4lcw:C (2.4) BS01 1VY ? N/A Q95460 24101382
    243487 4lcy:A (1.6) BS01 peptide ? N/A P01889 N/A
    243488 4lcy:F (1.6) BS01 peptide ? N/A P01889 N/A
    243489 4lcz:A (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    243490 4lcz:A (2.6) BS02 CLA ? GO:0009765 ... P12333 24482437
    243491 4lcz:A (2.6) BS03 CLA ? GO:0009765 ... P12333 24482437
    243492 4lcz:A (2.6) BS04 CLA ? GO:0009765 ... P12333 24482437
    243493 4lcz:A (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    243494 4lcz:A (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    243495 4lcz:A (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    243496 4lcz:A (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    243497 4lcz:A (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    243498 4lcz:A (2.6) BS10 CLA ? GO:0009765 ... P12333 24482437
    243499 4lcz:A (2.6) BS11 CLA ? GO:0009765 ... P12333 24482437
    243500 4lcz:A (2.6) BS12 CLA ? GO:0009765 ... P12333 24482437
    243501 4lcz:A (2.6) BS13 CLA ? GO:0009765 ... P12333 24482437
    243502 4lcz:A (2.6) BS14 CLA ? GO:0009765 ... P12333 24482437
    243503 4lcz:B (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    243504 4lcz:B (2.6) BS02 CLA ? GO:0009765 ... P12333 24482437
    243505 4lcz:B (2.6) BS03 CLA ? GO:0009765 ... P12333 24482437
    243506 4lcz:B (2.6) BS04 CLA ? GO:0009765 ... P12333 24482437
    243507 4lcz:B (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    243508 4lcz:B (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    243509 4lcz:B (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    243510 4lcz:B (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    243511 4lcz:B (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    243512 4lcz:B (2.6) BS10 CLA ? GO:0009765 ... P12333 24482437
    243513 4lcz:B (2.6) BS11 CLA ? GO:0009765 ... P12333 24482437
    243514 4lcz:B (2.6) BS12 CLA ? GO:0009765 ... P12333 24482437
    243515 4lcz:B (2.6) BS13 CLA ? GO:0009765 ... P12333 24482437
    243516 4lcz:B (2.6) BS14 CLA ? GO:0009765 ... P12333 24482437
    243517 4lcz:B (2.6) BS15 CHL ? GO:0009765 ... P12333 24482437
    243518 4lcz:C (2.6) BS01 CHL ? GO:0009765 ... P12333 24482437
    243519 4lcz:C (2.6) BS02 CLA ? GO:0009765 ... P12333 24482437
    243520 4lcz:C (2.6) BS03 CLA ? GO:0009765 ... P12333 24482437
    243521 4lcz:C (2.6) BS04 CLA ? GO:0009765 ... P12333 24482437
    243522 4lcz:C (2.6) BS05 CHL ? GO:0009765 ... P12333 24482437
    243523 4lcz:C (2.6) BS06 CHL ? GO:0009765 ... P12333 24482437
    243524 4lcz:C (2.6) BS07 CHL ? GO:0009765 ... P12333 24482437
    243525 4lcz:C (2.6) BS08 CHL ? GO:0009765 ... P12333 24482437
    243526 4lcz:C (2.6) BS09 CHL ? GO:0009765 ... P12333 24482437
    243527 4lcz:C (2.6) BS10 CLA ? GO:0009765 ... P12333 24482437
    243528 4lcz:C (2.6) BS11 CLA ? GO:0009765 ... P12333 24482437
    243529 4lcz:C (2.6) BS12 CLA ? GO:0009765 ... P12333 24482437
    243530 4lcz:C (2.6) BS13 CLA ? GO:0009765 ... P12333 24482437
    243531 4lcz:C (2.6) BS14 CLA ? GO:0009765 ... P12333 24482437
    243532 4ld0:A (3.75) BS01 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    243533 4ld0:A (3.75) BS02 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    243534 4ld0:B (3.75) BS01 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    243535 4ld0:B (3.75) BS02 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    243536 4ld0:B (3.75) BS03 dna 3.1.21.10 GO:0000287 ... Q5SJC4 23980027
    243537 4ld2:A (1.55) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243538 4ld2:A (1.55) BS02 CTN 3.5.-.- GO:0008270 ... Q82Y41 24083949 MOAD: Ka=43000M^-1
    243539 4ld2:B (1.55) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243540 4ld3:A (2.44) BS01 peptide ? N/A E7FCY1 24076405
    243541 4ld4:A (3.0) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243542 4ld4:B (3.0) BS01 ZN 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243543 4ld4:B (3.0) BS02 CYT 3.5.-.- GO:0008270 ... Q82Y41 24083949
    243544 4ld7:A (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243545 4ld7:B (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243546 4ld7:C (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243547 4ld7:D (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243548 4ld7:E (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243549 4ld7:F (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243550 4ld7:G (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243551 4ld7:H (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243552 4ld7:I (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243553 4ld7:J (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243554 4ld7:K (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243555 4ld7:L (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243556 4ld7:M (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243557 4ld7:N (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243558 4ld7:O (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243559 4ld7:P (2.83) BS01 PIS 2.5.1.- GO:0009820 ... A1DN10 24239009
    243560 4ld9:A (3.306) BS01 dna ? GO:0000786 ... P84233 23934150
    243561 4ld9:A (3.306) BS02 dna ? GO:0000786 ... P84233 23934150
    243562 4ld9:B (3.306) BS01 dna ? GO:0000786 ... P62799 23934150
    243563 4ld9:B (3.306) BS02 dna ? GO:0000786 ... P62799 23934150
    243564 4ld9:C (3.306) BS01 dna ? GO:0000786 ... P06897 23934150
    243565 4ld9:C (3.306) BS02 dna ? GO:0000786 ... P06897 23934150
    243566 4ld9:D (3.306) BS01 dna ? GO:0000786 ... P02281 23934150
    243567 4ld9:E (3.306) BS01 dna ? GO:0000786 ... P84233 23934150
    243568 4ld9:E (3.306) BS02 dna ? GO:0000786 ... P84233 23934150
    243569 4ld9:F (3.306) BS01 dna ? GO:0000786 ... P62799 23934150
    243570 4ld9:F (3.306) BS02 dna ? GO:0000786 ... P62799 23934150
    243571 4ld9:G (3.306) BS01 dna ? GO:0000786 ... P06897 23934150
    243572 4ld9:G (3.306) BS02 dna ? GO:0000786 ... P06897 23934150
    243573 4ld9:H (3.306) BS01 dna ? GO:0000786 ... P02281 23934150
    243574 4ld9:H (3.306) BS02 dna ? GO:0000786 ... P02281 23934150
    243575 4ldc:A (1.264) BS01 CA ? GO:0016020 ... P70610 23994332
    243576 4ldc:A (1.264) BS02 CA ? GO:0016020 ... P70610 23994332
    243577 4lde:A (2.79) BS01 P0G 3.2.1.17 GO:0003796 ... P00720
    P07550
    24056936
    243578 4lde:A (2.79) BS02 1WV 3.2.1.17 GO:0003796 ... P00720
    P07550
    24056936
    243579 4ldj:A (1.15) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 24889603
    243580 4ldk:A (2.04) BS01 FAD 1.8.3.2 GO:0016971 ... P55789 N/A
    243581 4ldl:A (3.1) BS01 XQC 3.2.1.17 GO:0003796 ... P00720
    P07550
    24056936
    243582 4ldl:A (3.1) BS02 1WV 3.2.1.17 GO:0003796 ... P00720
    P07550
    24056936
    243583 4ldo:A (3.2) BS01 1WV 3.2.1.17 GO:0003796 ... P00720
    P07550
    24056936
    243584 4ldo:A (3.2) BS02 ALE 3.2.1.17 GO:0003796 ... P00720
    P07550
    24056936
    243585 4ldx:A (2.9) BS01 dna ? GO:0003677 ... Q8L7G0 24485461
    243586 4ldx:A (2.9) BS02 dna ? GO:0003677 ... Q8L7G0 24485461
    243587 4ldx:B (2.9) BS01 dna ? GO:0003677 ... Q8L7G0 24485461
    243588 4ldx:B (2.9) BS02 dna ? GO:0003677 ... Q8L7G0 24485461
    243589 4ldz:A (2.31) BS01 MG ? GO:0000160 ... O34723 25406381
    243590 4ldz:A (2.31) BS02 BEF ? GO:0000160 ... O34723 25406381
    243591 4ldz:B (2.31) BS01 MG ? GO:0000160 ... O34723 25406381
    243592 4ldz:B (2.31) BS02 BEF ? GO:0000160 ... O34723 25406381
    243593 4le0:A (2.27) BS01 MG ? GO:0000160 ... O34723 25406381
    243594 4le0:A (2.27) BS02 BEF ? GO:0000160 ... O34723 25406381
    243595 4le0:B (2.27) BS01 MG ? GO:0000160 ... O34723 25406381
    243596 4le0:B (2.27) BS02 BEF ? GO:0000160 ... O34723 25406381
    243597 4le4:D (1.8) BS01 BGC ? N/A J7K096 N/A
    243598 4le6:A (2.1) BS01 ZN 3.1.8.1 N/A Q5W503 24223749
    243599 4le6:A (2.1) BS02 ZN 3.1.8.1 N/A Q5W503 24223749
    243600 4le6:B (2.1) BS01 ZN 3.1.8.1 N/A Q5W503 24223749

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).