SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    243801 4ley:A (2.5) BS02 dna 2.7.7.86 N/A Q8C6L5 24332030
    243802 4ley:A (2.5) BS03 dna 2.7.7.86 N/A Q8C6L5 24332030
    243803 4ley:A (2.5) BS04 dna 2.7.7.86 N/A Q8C6L5 24332030
    243804 4ley:A (2.5) BS05 ZN 2.7.7.86 N/A Q8C6L5 24332030
    243805 4ley:B (2.5) BS01 dna 2.7.7.86 N/A Q8C6L5 24332030
    243806 4ley:B (2.5) BS02 dna 2.7.7.86 N/A Q8C6L5 24332030
    243807 4ley:B (2.5) BS03 dna 2.7.7.86 N/A Q8C6L5 24332030
    243808 4ley:B (2.5) BS04 dna 2.7.7.86 N/A Q8C6L5 24332030
    243809 4ley:B (2.5) BS05 ZN 2.7.7.86 N/A Q8C6L5 24332030
    243810 4ley:C (2.5) BS01 dna 2.7.7.86 N/A Q8C6L5 24332030
    243811 4ley:C (2.5) BS02 dna 2.7.7.86 N/A Q8C6L5 24332030
    243812 4ley:C (2.5) BS03 dna 2.7.7.86 N/A Q8C6L5 24332030
    243813 4ley:C (2.5) BS04 dna 2.7.7.86 N/A Q8C6L5 24332030
    243814 4ley:C (2.5) BS05 ZN 2.7.7.86 N/A Q8C6L5 24332030
    243815 4ley:D (2.5) BS01 dna 2.7.7.86 N/A Q8C6L5 24332030
    243816 4ley:D (2.5) BS02 dna 2.7.7.86 N/A Q8C6L5 24332030
    243817 4ley:D (2.5) BS03 dna 2.7.7.86 N/A Q8C6L5 24332030
    243818 4ley:D (2.5) BS04 dna 2.7.7.86 N/A Q8C6L5 24332030
    243819 4ley:D (2.5) BS05 ZN 2.7.7.86 N/A Q8C6L5 24332030
    243820 4lez:A (2.36) BS01 dna 2.7.7.86 N/A Q8C6L5 24332030
    243821 4lez:A (2.36) BS02 dna 2.7.7.86 N/A Q8C6L5 24332030
    243822 4lez:A (2.36) BS03 dna 2.7.7.86 N/A Q8C6L5 24332030
    243823 4lez:A (2.36) BS04 dna 2.7.7.86 N/A Q8C6L5 24332030
    243824 4lez:A (2.36) BS05 ZN 2.7.7.86 N/A Q8C6L5 24332030
    243825 4lez:A (2.36) BS06 1SY 2.7.7.86 N/A Q8C6L5 24332030
    243826 4lez:C (2.36) BS01 dna 2.7.7.86 N/A Q8C6L5 24332030
    243827 4lez:C (2.36) BS02 dna 2.7.7.86 N/A Q8C6L5 24332030
    243828 4lez:C (2.36) BS03 dna 2.7.7.86 N/A Q8C6L5 24332030
    243829 4lez:C (2.36) BS04 ZN 2.7.7.86 N/A Q8C6L5 24332030
    243830 4lez:C (2.36) BS05 1SY 2.7.7.86 N/A Q8C6L5 24332030
    243831 4lf1:A (2.38) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243832 4lf1:A (2.38) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243833 4lf1:A (2.38) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243834 4lf1:B (2.38) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243835 4lf1:B (2.38) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243836 4lf1:B (2.38) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243837 4lf1:C (2.38) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243838 4lf1:C (2.38) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243839 4lf1:C (2.38) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243840 4lf1:D (2.38) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243841 4lf1:D (2.38) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243842 4lf1:D (2.38) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243843 4lf1:E (2.38) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243844 4lf1:E (2.38) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243845 4lf1:E (2.38) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243846 4lf1:F (2.38) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243847 4lf1:F (2.38) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243848 4lf1:F (2.38) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243849 4lf2:A (2.38) BS01 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243850 4lf2:C (2.38) BS01 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243851 4lf2:D (2.38) BS01 MG 4.1.1.39 GO:0000287 ... Q6N0W9 24942737
    243852 4lf4:B (3.3421) BS01 rna ? GO:0003735 ... P80371 N/A
    243853 4lf4:B (3.3421) BS02 MG ? GO:0003735 ... P80371 N/A
    243854 4lf4:C (3.3421) BS01 rna ? GO:0003676 ... P80372 N/A
    243855 4lf4:D (3.3421) BS01 rna ? GO:0003723 ... P80373 N/A
    243856 4lf4:D (3.3421) BS02 MG ? GO:0003723 ... P80373 N/A
    243857 4lf4:E (3.3421) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    243858 4lf4:F (3.3421) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    243859 4lf4:G (3.3421) BS01 rna ? GO:0000049 ... P17291 N/A
    243860 4lf4:H (3.3421) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    243861 4lf4:I (3.3421) BS01 rna ? GO:0003723 ... P80374 N/A
    243862 4lf4:J (3.3421) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    243863 4lf4:K (3.3421) BS01 rna ? GO:0003735 ... P80376 N/A
    243864 4lf4:K (3.3421) BS02 MG ? GO:0003735 ... P80376 N/A
    243865 4lf4:L (3.3421) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    243866 4lf4:L (3.3421) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    243867 4lf4:M (3.3421) BS01 rna ? GO:0000049 ... P80377 N/A
    243868 4lf4:M (3.3421) BS02 MG ? GO:0000049 ... P80377 N/A
    243869 4lf4:N (3.3421) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    243870 4lf4:N (3.3421) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    243871 4lf4:O (3.3421) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    243872 4lf4:P (3.3421) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    243873 4lf4:Q (3.3421) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    243874 4lf4:R (3.3421) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    243875 4lf4:S (3.3421) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    243876 4lf4:T (3.3421) BS01 rna ? GO:0003723 ... P80380 N/A
    243877 4lf5:B (3.753) BS01 rna ? GO:0003735 ... P80371 N/A
    243878 4lf5:B (3.753) BS02 MG ? GO:0003735 ... P80371 N/A
    243879 4lf5:C (3.753) BS01 rna ? GO:0003676 ... P80372 N/A
    243880 4lf5:D (3.753) BS01 rna ? GO:0003723 ... P80373 N/A
    243881 4lf5:D (3.753) BS02 MG ? GO:0003723 ... P80373 N/A
    243882 4lf5:E (3.753) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    243883 4lf5:F (3.753) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    243884 4lf5:G (3.753) BS01 rna ? GO:0000049 ... P17291 N/A
    243885 4lf5:H (3.753) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    243886 4lf5:I (3.753) BS01 rna ? GO:0003723 ... P80374 N/A
    243887 4lf5:J (3.753) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    243888 4lf5:K (3.753) BS01 rna ? GO:0003735 ... P80376 N/A
    243889 4lf5:L (3.753) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    243890 4lf5:L (3.753) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    243891 4lf5:M (3.753) BS01 rna ? GO:0000049 ... P80377 N/A
    243892 4lf5:M (3.753) BS02 MG ? GO:0000049 ... P80377 N/A
    243893 4lf5:N (3.753) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    243894 4lf5:N (3.753) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    243895 4lf5:O (3.753) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    243896 4lf5:P (3.753) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    243897 4lf5:Q (3.753) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    243898 4lf5:R (3.753) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    243899 4lf5:S (3.753) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    243900 4lf5:T (3.753) BS01 rna ? GO:0003723 ... P80380 N/A
    243901 4lf6:B (3.3052) BS01 rna ? GO:0003735 ... P80371 N/A
    243902 4lf6:C (3.3052) BS01 rna ? GO:0003676 ... P80372 N/A
    243903 4lf6:D (3.3052) BS01 rna ? GO:0003723 ... P80373 N/A
    243904 4lf6:E (3.3052) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    243905 4lf6:F (3.3052) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    243906 4lf6:G (3.3052) BS01 rna ? GO:0000049 ... P17291 N/A
    243907 4lf6:H (3.3052) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    243908 4lf6:I (3.3052) BS01 rna ? GO:0003723 ... P80374 N/A
    243909 4lf6:J (3.3052) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    243910 4lf6:K (3.3052) BS01 rna ? GO:0003735 ... P80376 N/A
    243911 4lf6:K (3.3052) BS02 MG ? GO:0003735 ... P80376 N/A
    243912 4lf6:L (3.3052) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    243913 4lf6:M (3.3052) BS01 rna ? GO:0000049 ... P80377 N/A
    243914 4lf6:M (3.3052) BS02 MG ? GO:0000049 ... P80377 N/A
    243915 4lf6:N (3.3052) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    243916 4lf6:N (3.3052) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    243917 4lf6:O (3.3052) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    243918 4lf6:P (3.3052) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    243919 4lf6:Q (3.3052) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    243920 4lf6:Q (3.3052) BS02 MG N/A GO:0003735 ... P0DOY7 N/A
    243921 4lf6:R (3.3052) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    243922 4lf6:S (3.3052) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    243923 4lf6:T (3.3052) BS01 rna ? GO:0003723 ... P80380 N/A
    243924 4lf7:B (3.1484) BS01 rna ? GO:0003735 ... P80371 N/A
    243925 4lf7:C (3.1484) BS01 rna ? GO:0003676 ... P80372 N/A
    243926 4lf7:D (3.1484) BS01 rna ? GO:0003723 ... P80373 N/A
    243927 4lf7:D (3.1484) BS02 MG ? GO:0003723 ... P80373 N/A
    243928 4lf7:E (3.1484) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    243929 4lf7:F (3.1484) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    243930 4lf7:G (3.1484) BS01 rna ? GO:0000049 ... P17291 N/A
    243931 4lf7:H (3.1484) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    243932 4lf7:I (3.1484) BS01 rna ? GO:0003723 ... P80374 N/A
    243933 4lf7:J (3.1484) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    243934 4lf7:K (3.1484) BS01 rna ? GO:0003735 ... P80376 N/A
    243935 4lf7:L (3.1484) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    243936 4lf7:L (3.1484) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    243937 4lf7:M (3.1484) BS01 rna ? GO:0000049 ... P80377 N/A
    243938 4lf7:M (3.1484) BS02 MG ? GO:0000049 ... P80377 N/A
    243939 4lf7:N (3.1484) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    243940 4lf7:N (3.1484) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    243941 4lf7:N (3.1484) BS03 MG N/A GO:0003735 ... P0DOY6 N/A
    243942 4lf7:O (3.1484) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    243943 4lf7:P (3.1484) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    243944 4lf7:Q (3.1484) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    243945 4lf7:R (3.1484) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    243946 4lf7:S (3.1484) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    243947 4lf7:T (3.1484) BS01 rna ? GO:0003723 ... P80380 N/A
    243948 4lf7:T (3.1484) BS02 MG ? GO:0003723 ... P80380 N/A
    243949 4lf8:B (3.1484) BS01 rna ? GO:0003735 ... P80371 N/A
    243950 4lf8:C (3.1484) BS01 rna ? GO:0003676 ... P80372 N/A
    243951 4lf8:D (3.1484) BS01 rna ? GO:0003723 ... P80373 N/A
    243952 4lf8:D (3.1484) BS02 MG ? GO:0003723 ... P80373 N/A
    243953 4lf8:E (3.1484) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    243954 4lf8:F (3.1484) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    243955 4lf8:G (3.1484) BS01 rna ? GO:0000049 ... P17291 N/A
    243956 4lf8:H (3.1484) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    243957 4lf8:I (3.1484) BS01 rna ? GO:0003723 ... P80374 N/A
    243958 4lf8:J (3.1484) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    243959 4lf8:K (3.1484) BS01 rna ? GO:0003735 ... P80376 N/A
    243960 4lf8:L (3.1484) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    243961 4lf8:L (3.1484) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    243962 4lf8:M (3.1484) BS01 rna ? GO:0000049 ... P80377 N/A
    243963 4lf8:M (3.1484) BS02 MG ? GO:0000049 ... P80377 N/A
    243964 4lf8:N (3.1484) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    243965 4lf8:N (3.1484) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    243966 4lf8:N (3.1484) BS03 MG N/A GO:0003735 ... P0DOY6 N/A
    243967 4lf8:O (3.1484) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    243968 4lf8:P (3.1484) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    243969 4lf8:Q (3.1484) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    243970 4lf8:R (3.1484) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    243971 4lf8:S (3.1484) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    243972 4lf8:T (3.1484) BS01 rna ? GO:0003723 ... P80380 N/A
    243973 4lf8:T (3.1484) BS02 MG ? GO:0003723 ... P80380 N/A
    243974 4lf9:B (3.2811) BS01 rna ? GO:0003735 ... P80371 N/A
    243975 4lf9:B (3.2811) BS02 MG ? GO:0003735 ... P80371 N/A
    243976 4lf9:C (3.2811) BS01 rna ? GO:0003676 ... P80372 N/A
    243977 4lf9:D (3.2811) BS01 rna ? GO:0003723 ... P80373 N/A
    243978 4lf9:D (3.2811) BS02 MG ? GO:0003723 ... P80373 N/A
    243979 4lf9:E (3.2811) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    243980 4lf9:F (3.2811) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    243981 4lf9:G (3.2811) BS01 rna ? GO:0000049 ... P17291 N/A
    243982 4lf9:H (3.2811) BS01 rna N/A GO:0003735 ... P0DOY9 N/A
    243983 4lf9:I (3.2811) BS01 rna ? GO:0003723 ... P80374 N/A
    243984 4lf9:J (3.2811) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    243985 4lf9:K (3.2811) BS01 rna ? GO:0003735 ... P80376 N/A
    243986 4lf9:L (3.2811) BS01 rna ? GO:0000049 ... F6DEQ7 N/A
    243987 4lf9:L (3.2811) BS02 MG ? GO:0000049 ... F6DEQ7 N/A
    243988 4lf9:M (3.2811) BS01 rna ? GO:0000049 ... P80377 N/A
    243989 4lf9:M (3.2811) BS02 MG ? GO:0000049 ... P80377 N/A
    243990 4lf9:N (3.2811) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    243991 4lf9:N (3.2811) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    243992 4lf9:O (3.2811) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    243993 4lf9:P (3.2811) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    243994 4lf9:Q (3.2811) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    243995 4lf9:R (3.2811) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    243996 4lf9:S (3.2811) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    243997 4lf9:T (3.2811) BS01 rna ? GO:0003723 ... P80380 N/A
    243998 4lfa:B (3.6461) BS01 rna ? GO:0003735 ... P80371 N/A
    243999 4lfa:B (3.6461) BS02 MG ? GO:0003735 ... P80371 N/A
    244000 4lfa:C (3.6461) BS01 rna ? GO:0003676 ... P80372 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).