SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    245201 4lnt:QR (2.94) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    245202 4lnt:QS (2.94) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    245203 4lnt:QT (2.94) BS01 rna ? GO:0003723 ... P80380 25128388
    245204 4lnt:R0 (2.94) BS01 rna ? GO:0003735 ... P60493 25128388
    245205 4lnt:R0 (2.94) BS02 rna ? GO:0003735 ... P60493 25128388
    245206 4lnt:R0 (2.94) BS03 rna ? GO:0003735 ... P60493 25128388
    245207 4lnt:R1 (2.94) BS01 rna ? GO:0003735 ... P60494 25128388
    245208 4lnt:R2 (2.94) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    245209 4lnt:R3 (2.94) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    245210 4lnt:R3 (2.94) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    245211 4lnt:R4 (2.94) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    245212 4lnt:R4 (2.94) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    245213 4lnt:R5 (2.94) BS01 rna ? GO:0003735 ... P80339 25128388
    245214 4lnt:R6 (2.94) BS01 rna ? GO:0003735 ... P35871 25128388
    245215 4lnt:R7 (2.94) BS01 rna ? GO:0003735 ... P80340 25128388
    245216 4lnt:R8 (2.94) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    245217 4lnt:R9 (2.94) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    245218 4lnt:RD (2.94) BS01 rna ? GO:0002181 ... P60405 25128388
    245219 4lnt:RD (2.94) BS02 rna ? GO:0002181 ... P60405 25128388
    245220 4lnt:RE (2.94) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    245221 4lnt:RF (2.94) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    245222 4lnt:RG (2.94) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    245223 4lnt:RG (2.94) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    245224 4lnt:RH (2.94) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    245225 4lnt:RI (2.94) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    245226 4lnt:RN (2.94) BS01 rna ? GO:0003729 ... P60488 25128388
    245227 4lnt:RO (2.94) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    245228 4lnt:RO (2.94) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    245229 4lnt:RP (2.94) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    245230 4lnt:RP (2.94) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    245231 4lnt:RP (2.94) BS03 MG ? GO:0003735 ... Q5SHQ7 25128388
    245232 4lnt:RQ (2.94) BS01 rna ? GO:0003735 ... P60489 25128388
    245233 4lnt:RQ (2.94) BS02 rna ? GO:0003735 ... P60489 25128388
    245234 4lnt:RR (2.94) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    245235 4lnt:RS (2.94) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    245236 4lnt:RS (2.94) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    245237 4lnt:RT (2.94) BS01 rna ? GO:0003735 ... P60490 25128388
    245238 4lnt:RT (2.94) BS02 rna ? GO:0003735 ... P60490 25128388
    245239 4lnt:RU (2.94) BS01 rna ? GO:0000027 ... P60491 25128388
    245240 4lnt:RV (2.94) BS01 rna ? GO:0003723 ... P60492 25128388
    245241 4lnt:RW (2.94) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    245242 4lnt:RX (2.94) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    245243 4lnt:RY (2.94) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    245244 4lnt:RZ (2.94) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    245245 4lnt:RZ (2.94) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    245246 4lnt:XB (2.94) BS01 rna ? GO:0003735 ... P80371 25128388
    245247 4lnt:XC (2.94) BS01 rna ? GO:0003676 ... P80372 25128388
    245248 4lnt:XD (2.94) BS01 rna ? GO:0003723 ... P80373 25128388
    245249 4lnt:XD (2.94) BS02 ZN ? GO:0003723 ... P80373 25128388
    245250 4lnt:XE (2.94) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    245251 4lnt:XF (2.94) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    245252 4lnt:XG (2.94) BS01 rna ? GO:0000049 ... P17291 25128388
    245253 4lnt:XH (2.94) BS01 rna N/A GO:0003735 ... P0DOY9 25128388
    245254 4lnt:XI (2.94) BS01 rna ? GO:0003723 ... P80374 25128388
    245255 4lnt:XI (2.94) BS02 rna ? GO:0003723 ... P80374 25128388
    245256 4lnt:XJ (2.94) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    245257 4lnt:XK (2.94) BS01 rna ? GO:0003735 ... P80376 25128388
    245258 4lnt:XL (2.94) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    245259 4lnt:XM (2.94) BS01 rna ? GO:0000049 ... P80377 25128388
    245260 4lnt:XM (2.94) BS02 rna ? GO:0000049 ... P80377 25128388
    245261 4lnt:XM (2.94) BS03 MG ? GO:0000049 ... P80377 25128388
    245262 4lnt:XM (2.94) BS04 MG ? GO:0000049 ... P80377 25128388
    245263 4lnt:XN (2.94) BS01 rna N/A GO:0003735 ... P0DOY6 25128388
    245264 4lnt:XN (2.94) BS02 ZN N/A GO:0003735 ... P0DOY6 25128388
    245265 4lnt:XO (2.94) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    245266 4lnt:XO (2.94) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    245267 4lnt:XP (2.94) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    245268 4lnt:XQ (2.94) BS01 rna N/A GO:0003735 ... P0DOY7 25128388
    245269 4lnt:XR (2.94) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    245270 4lnt:XS (2.94) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    245271 4lnt:XT (2.94) BS01 rna ? GO:0003723 ... P80380 25128388
    245272 4lnt:Y0 (2.94) BS01 rna ? GO:0003735 ... P60493 25128388
    245273 4lnt:Y0 (2.94) BS02 rna ? GO:0003735 ... P60493 25128388
    245274 4lnt:Y0 (2.94) BS03 rna ? GO:0003735 ... P60493 25128388
    245275 4lnt:Y1 (2.94) BS01 rna ? GO:0003735 ... P60494 25128388
    245276 4lnt:Y2 (2.94) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    245277 4lnt:Y3 (2.94) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    245278 4lnt:Y3 (2.94) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    245279 4lnt:Y4 (2.94) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    245280 4lnt:Y4 (2.94) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    245281 4lnt:Y5 (2.94) BS01 rna ? GO:0003735 ... P80339 25128388
    245282 4lnt:Y6 (2.94) BS01 rna ? GO:0003735 ... P35871 25128388
    245283 4lnt:Y7 (2.94) BS01 rna ? GO:0003735 ... P80340 25128388
    245284 4lnt:Y8 (2.94) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    245285 4lnt:Y9 (2.94) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    245286 4lnt:YD (2.94) BS01 rna ? GO:0002181 ... P60405 25128388
    245287 4lnt:YD (2.94) BS02 rna ? GO:0002181 ... P60405 25128388
    245288 4lnt:YE (2.94) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    245289 4lnt:YF (2.94) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    245290 4lnt:YG (2.94) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    245291 4lnt:YG (2.94) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    245292 4lnt:YH (2.94) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    245293 4lnt:YI (2.94) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    245294 4lnt:YI (2.94) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    245295 4lnt:YN (2.94) BS01 rna ? GO:0003729 ... P60488 25128388
    245296 4lnt:YO (2.94) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    245297 4lnt:YO (2.94) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    245298 4lnt:YP (2.94) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    245299 4lnt:YP (2.94) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    245300 4lnt:YQ (2.94) BS01 rna ? GO:0003735 ... P60489 25128388
    245301 4lnt:YQ (2.94) BS02 rna ? GO:0003735 ... P60489 25128388
    245302 4lnt:YR (2.94) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    245303 4lnt:YS (2.94) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    245304 4lnt:YS (2.94) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    245305 4lnt:YT (2.94) BS01 rna ? GO:0003735 ... P60490 25128388
    245306 4lnt:YT (2.94) BS02 rna ? GO:0003735 ... P60490 25128388
    245307 4lnt:YU (2.94) BS01 rna ? GO:0000027 ... P60491 25128388
    245308 4lnt:YV (2.94) BS01 rna ? GO:0003723 ... P60492 25128388
    245309 4lnt:YW (2.94) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    245310 4lnt:YX (2.94) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    245311 4lnt:YX (2.94) BS02 MG ? GO:0003735 ... Q5SHP0 25128388
    245312 4lnt:YY (2.94) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    245313 4lnt:YZ (2.94) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    245314 4lnt:YZ (2.94) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    245315 4lnu:A (2.19) BS01 GTP ? GO:0005200 ... N/A 25395082
    245316 4lnu:B (2.19) BS01 GDP ? GO:0003924 ... D0VWY9 25395082
    245317 4lnw:A (1.9) BS01 T3 ? GO:0003677 ... P10827 24552590
    245318 4lnw:A (1.9) BS02 T3 ? GO:0003677 ... P10827 24552590
    245319 4lnx:A (2.05) BS01 T44 ? GO:0003677 ... P10827 24552590 BindingDB: EC50=19nM
    245320 4lnx:A (2.05) BS02 T3 ? GO:0003677 ... P10827 24552590
    245321 4lo1:A (2.254) BS01 GAL ? N/A Q45871 24130488 MOAD: Kd~1.8mM
    245322 4lo1:B (2.254) BS01 GAL ? N/A Q45871 24130488 MOAD: Kd~1.8mM
    245323 4lo2:A (2.254) BS01 GAL ? N/A Q45871 24130488
    245324 4lo2:B (2.254) BS01 GAL ? N/A Q45871 24130488
    245325 4lo3:A (2.249) BS01 GAL ? N/A Q45871 24130488
    245326 4lo3:B (2.249) BS01 GAL ? N/A Q45871 24130488
    245327 4lo5:B (2.7) BS01 SIA ? GO:0005576 ... Q8KHU9 24130488
    245328 4lo6:B (2.3) BS01 SIA ? GO:0005576 ... Q8KHU9 24130488
    245329 4lo9:A (2.5) BS01 ZN ? GO:0000976 ... P04637 24100332
    245330 4lo9:B (2.5) BS01 ZN ? GO:0000976 ... P04637 24100332
    245331 4lo9:C (2.5) BS01 ZN ? GO:0000976 ... P04637 24100332
    245332 4lo9:D (2.5) BS01 ZN ? GO:0000976 ... P04637 24100332
    245333 4loc:A (2.26) BS01 ZN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245334 4loc:A (2.26) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245335 4loc:A (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245336 4loc:B (2.26) BS01 ZN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245337 4loc:B (2.26) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245338 4loc:B (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245339 4loc:C (2.26) BS01 ZN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245340 4loc:C (2.26) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245341 4loc:C (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245342 4loc:D (2.26) BS01 ZN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245343 4loc:D (2.26) BS02 MG 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245344 4loc:D (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    245345 4loe:A (1.85) BS01 ZN ? GO:0000976 ... P04637 24100332
    245346 4loe:B (1.85) BS01 ZN ? GO:0000976 ... P04637 24100332
    245347 4loe:C (1.85) BS01 ZN ? GO:0000976 ... P04637 24100332
    245348 4loe:D (1.85) BS01 ZN ? GO:0000976 ... P04637 24100332
    245349 4lof:A (2.0) BS01 ZN ? GO:0000976 ... P04637 24100332
    245350 4loh:A (2.25) BS01 1SY ? GO:0002218 ... Q86WV6 23910378 MOAD: Kd=5.3uM
    245351 4loh:B (2.25) BS01 1SY ? GO:0002218 ... Q86WV6 23910378
    245352 4loi:A (1.89) BS01 1YC ? GO:0002218 ... Q86WV6 23910378 BindingDB: EC50=30nM, Kd=287000nM
    245353 4loi:B (1.89) BS01 1YC ? GO:0002218 ... Q86WV6 23910378 MOAD: Kd=0.17uM
    BindingDB: EC50=30nM, Kd=287000nM
    245354 4loj:A (1.77) BS01 1SY ? GO:0002218 ... Q3TBT3 23910378
    245355 4loj:B (1.77) BS01 1SY ? GO:0002218 ... Q3TBT3 23910378
    245356 4lok:A (2.07) BS01 1YD ? GO:0002218 ... Q3TBT3 23910378
    245357 4lok:B (2.07) BS01 1YD ? GO:0002218 ... Q3TBT3 23910378 MOAD: Kd=0.26uM
    245358 4lol:A (2.43) BS01 1YE ? GO:0002218 ... Q3TBT3 23910378 MOAD: Kd=0.49uM
    BindingDB: Kd=130nM
    245359 4lol:A (2.43) BS02 1YE ? GO:0002218 ... Q3TBT3 23910378 MOAD: Kd=0.49uM
    BindingDB: Kd=130nM
    245360 4lol:B (2.43) BS01 1YE ? GO:0002218 ... Q3TBT3 23910378 BindingDB: Kd=130nM
    245361 4lol:B (2.43) BS02 1YE ? GO:0002218 ... Q3TBT3 23910378 BindingDB: Kd=130nM
    245362 4lom:A (2.1) BS01 IYP N/A GO:0000105 ... N/A N/A
    245363 4lom:A (2.1) BS02 MN N/A GO:0000105 ... N/A N/A
    245364 4lom:A (2.1) BS03 MN N/A GO:0000105 ... N/A N/A
    245365 4loo:A (1.95) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245366 4loo:A (1.95) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245367 4lop:A (2.049) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245368 4lop:A (2.049) BS02 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245369 4lop:A (2.049) BS03 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245370 4lop:B (2.049) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245371 4lop:B (2.049) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245372 4lop:C (2.049) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245373 4lop:C (2.049) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245374 4lop:D (2.049) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245375 4lop:D (2.049) BS02 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245376 4lop:D (2.049) BS03 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245377 4loq:A (2.319) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245378 4loq:A (2.319) BS02 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245379 4loq:A (2.319) BS03 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245380 4loq:B (2.319) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245381 4loq:B (2.319) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245382 4loq:C (2.319) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245383 4loq:C (2.319) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245384 4loq:D (2.319) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 24037507
    245385 4loq:D (2.319) BS02 SB4 2.7.11.24 GO:0000077 ... P47811 24037507
    245386 4lor:A (2.5) BS01 peptide 3.4.21.42 GO:0005509 ... P09871 23922389
    245387 4lor:A (2.5) BS02 CA 3.4.21.42 GO:0005509 ... P09871 23922389
    245388 4lor:A (2.5) BS03 CA 3.4.21.42 GO:0005509 ... P09871 23922389
    245389 4lor:A (2.5) BS04 CA 3.4.21.42 GO:0005509 ... P09871 23922389
    245390 4los:A (1.996) BS01 CA 3.4.21.42 N/A P09871 23922389
    245391 4lov:A (1.5) BS01 KGM ? GO:0007155 ... P08191 24476493 MOAD: Kd=17.1nM
    245392 4lox:A (1.98) BS01 dna ? GO:0004519 ... F7WD42 N/A
    245393 4lox:A (1.98) BS02 dna ? GO:0004519 ... F7WD42 N/A
    245394 4lox:A (1.98) BS03 dna ? GO:0004519 ... F7WD42 N/A
    245395 4lox:A (1.98) BS04 dna ? GO:0004519 ... F7WD42 N/A
    245396 4lox:A (1.98) BS05 MG ? GO:0004519 ... F7WD42 N/A
    245397 4lox:A (1.98) BS06 MG ? GO:0004519 ... F7WD42 N/A
    245398 4loy:H (1.77) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 24175584
    245399 4loy:H (1.77) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 24175584
    245400 4loy:H (1.77) BS03 6XS 3.4.21.5 GO:0004252 ... P00734 24175584

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).