SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    247601 4m8y:A (2.22) BS01 KGQ 3.1.26.13 GO:0004190 ... Q90JJ9 24371077 MOAD: Ki=0.11nM
    247602 4m8y:A (2.22) BS02 KGQ 3.1.26.13 GO:0004190 ... Q90JJ9 24371077 MOAD: Ki=0.11nM
    247603 4m8y:B (2.22) BS01 KGQ 3.1.26.13 GO:0004190 ... Q90JJ9 24371077
    247604 4m8y:B (2.22) BS02 KGQ 3.1.26.13 GO:0004190 ... Q90JJ9 24371077
    247605 4m91:A (1.1) BS01 peptide ? N/A Q13454 24685145
    247606 4m92:A (1.6) BS01 peptide ? N/A Q13454 24685145
    247607 4m93:B (2.09) BS01 CA N/A N/A N/A 24682362
    247608 4m94:A (2.14) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 24598744
    247609 4m94:A (2.14) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 24598744
    247610 4m95:A (1.72) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 24598744
    247611 4m95:A (1.72) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    N/A P03355 24598744
    247612 4m99:A (2.6) BS01 ACO ? N/A Q5FAE1 24064219
    247613 4m99:A (2.6) BS02 ACO ? N/A Q5FAE1 24064219
    247614 4m99:B (2.6) BS01 ACO ? N/A Q5FAE1 24064219
    247615 4m99:B (2.6) BS02 ACO ? N/A Q5FAE1 24064219
    247616 4m99:C (2.6) BS01 ACO ? N/A Q5FAE1 24064219
    247617 4m99:C (2.6) BS02 ACO ? N/A Q5FAE1 24064219
    247618 4m9a:A (2.2) BS01 FDA 1.3.99.- GO:0003995 ... Q2T4A2 N/A
    247619 4m9a:B (2.2) BS01 FDA 1.3.99.- GO:0003995 ... Q2T4A2 N/A
    247620 4m9d:A (1.821) BS01 AMP 6.3.4.4 GO:0000166 ... Q81JI9 N/A
    247621 4m9d:B (1.821) BS01 AMP 6.3.4.4 GO:0000166 ... Q81JI9 N/A
    247622 4m9e:A (1.851) BS01 dna ? N/A Q60793 24520114
    247623 4m9e:A (1.851) BS02 dna ? N/A Q60793 24520114
    247624 4m9e:A (1.851) BS03 ZN ? N/A Q60793 24520114
    247625 4m9e:A (1.851) BS04 ZN ? N/A Q60793 24520114
    247626 4m9e:A (1.851) BS05 ZN ? N/A Q60793 24520114
    247627 4m9g:A (2.01) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247628 4m9g:A (2.01) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247629 4m9g:A (2.01) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247630 4m9h:A (2.394) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247631 4m9h:A (2.394) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247632 4m9h:A (2.394) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247633 4m9h:A (2.394) BS04 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209 BindingDB: IC50=1400nM
    247634 4m9j:A (2.038) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247635 4m9j:A (2.038) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247636 4m9j:A (2.038) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247637 4m9j:A (2.038) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247638 4m9j:A (2.038) BS05 DUP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247639 4m9l:A (2.091) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247640 4m9l:A (2.091) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247641 4m9l:A (2.091) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247642 4m9l:A (2.091) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247643 4m9l:A (2.091) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247644 4m9n:A (2.275) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247645 4m9n:A (2.275) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247646 4m9n:A (2.275) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247647 4m9n:A (2.275) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247648 4m9n:A (2.275) BS05 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 24133209
    247649 4m9q:A (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    247650 4m9q:A (2.5) BS02 MG 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    247651 4m9q:B (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    247652 4m9q:B (2.5) BS02 MG 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    247653 4m9q:C (2.5) BS01 GNP 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    247654 4m9q:C (2.5) BS02 MG 3.6.5.2 GO:0003924 ... A8INQ0 24168557
    247655 4m9s:A (3.207) BS01 peptide ? GO:0000287 ... P30429 24065769
    247656 4m9s:A (3.207) BS02 MG ? GO:0000287 ... P30429 24065769
    247657 4m9s:A (3.207) BS03 ATP ? GO:0000287 ... P30429 24065769
    247658 4m9s:B (3.207) BS01 peptide ? GO:0000287 ... P30429 24065769
    247659 4m9s:B (3.207) BS02 MG ? GO:0000287 ... P30429 24065769
    247660 4m9s:B (3.207) BS03 ATP ? GO:0000287 ... P30429 24065769
    247661 4m9s:C (3.207) BS01 peptide ? GO:0000287 ... P30429 24065769
    247662 4m9s:C (3.207) BS02 ATP ? GO:0000287 ... P30429 24065769
    247663 4m9s:D (3.207) BS01 peptide ? GO:0000287 ... P30429 24065769
    247664 4m9s:D (3.207) BS02 MG ? GO:0000287 ... P30429 24065769
    247665 4m9s:D (3.207) BS03 ATP ? GO:0000287 ... P30429 24065769
    247666 4m9v:C (0.969) BS01 dna ? N/A Q8C6P8 24236546
    247667 4m9v:C (0.969) BS02 dna ? N/A Q8C6P8 24236546
    247668 4m9v:C (0.969) BS03 ZN ? N/A Q8C6P8 24236546
    247669 4m9v:C (0.969) BS04 ZN ? N/A Q8C6P8 24236546
    247670 4m9v:F (0.969) BS01 dna ? N/A Q8C6P8 24236546
    247671 4m9v:F (0.969) BS02 dna ? N/A Q8C6P8 24236546
    247672 4m9v:F (0.969) BS03 ZN ? N/A Q8C6P8 24236546
    247673 4m9v:F (0.969) BS04 ZN ? N/A Q8C6P8 24236546
    247674 4m9x:A (3.344) BS01 peptide ? GO:0000287 ... P30429 24065769
    247675 4m9x:A (3.344) BS02 MG ? GO:0000287 ... P30429 24065769
    247676 4m9x:A (3.344) BS03 ATP ? GO:0000287 ... P30429 24065769
    247677 4m9x:B (3.344) BS01 peptide ? GO:0000287 ... P30429 24065769
    247678 4m9x:B (3.344) BS02 MG ? GO:0000287 ... P30429 24065769
    247679 4m9x:B (3.344) BS03 ATP ? GO:0000287 ... P30429 24065769
    247680 4m9y:A (4.2) BS01 peptide ? GO:0000287 ... P30429 24065769
    247681 4m9y:A (4.2) BS02 MG ? GO:0000287 ... P30429 24065769
    247682 4m9y:A (4.2) BS03 ATP ? GO:0000287 ... P30429 24065769
    247683 4m9y:B (4.2) BS01 peptide ? GO:0000287 ... P30429 24065769
    247684 4m9y:B (4.2) BS02 MG ? GO:0000287 ... P30429 24065769
    247685 4m9y:B (4.2) BS03 ATP ? GO:0000287 ... P30429 24065769
    247686 4m9z:A (3.405) BS01 peptide ? GO:0000287 ... P30429 24065769
    247687 4m9z:A (3.405) BS02 MG ? GO:0000287 ... P30429 24065769
    247688 4m9z:A (3.405) BS03 ATP ? GO:0000287 ... P30429 24065769
    247689 4m9z:B (3.405) BS01 peptide ? GO:0000287 ... P30429 24065769
    247690 4m9z:B (3.405) BS02 MG ? GO:0000287 ... P30429 24065769
    247691 4m9z:B (3.405) BS03 ATP ? GO:0000287 ... P30429 24065769
    247692 4m9z:C (3.405) BS01 peptide ? GO:0000287 ... P30429 24065769
    247693 4m9z:C (3.405) BS02 ATP ? GO:0000287 ... P30429 24065769
    247694 4m9z:D (3.405) BS01 peptide ? GO:0000287 ... P30429 24065769
    247695 4m9z:D (3.405) BS02 ATP ? GO:0000287 ... P30429 24065769
    247696 4ma0:A (1.982) BS01 AMP 6.3.4.18 GO:0000166 ... Q5NGE8 N/A
    247697 4ma1:B (2.32) BS01 MAN N/A N/A N/A 24682362
    247698 4ma4:A (2.23) BS01 ADP 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 24295899
    247699 4ma4:A (2.23) BS02 GSH 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 24295899
    247700 4ma4:A (2.23) BS03 F6P 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 24295899
    247701 4ma5:A (1.809) BS01 ANP 6.3.4.18 GO:0000166 ... Q5NGE8 N/A
    247702 4ma6:A (2.0) BS01 28E ? GO:0004864 ... Q6VT83 24253038
    247703 4ma7:A (1.97) BS01 P2Z ? GO:0016020 ... P04925 24373770
    247704 4ma8:C (2.2) BS01 Z80 ? GO:0016020 ... P04925 24373770 BindingDB: EC50=2000nM
    247705 4mae:A (1.6) BS01 CE 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 24034209
    247706 4mae:A (1.6) BS02 PQQ 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 24034209
    247707 4mae:B (1.6) BS01 CE 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 24034209
    247708 4mae:B (1.6) BS02 PQQ 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 24034209
    247709 4maf:A (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247710 4maf:B (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247711 4maf:C (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247712 4maf:D (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247713 4maf:E (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247714 4maf:F (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247715 4maf:G (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247716 4maf:H (2.48) BS01 ADX 2.7.7.4 GO:0000103 ... Q8SAG1 24584934
    247717 4mag:A (1.45) BS01 CO N/A GO:0030288 ... N/A 25004958
    247718 4mah:A (1.55) BS01 ZN 3.2.1.14 N/A Q2UA85 24362702
    247719 4mai:A (1.4) BS01 CU1 3.2.1.14 N/A Q2UA85 24362702
    247720 4mam:A (1.474) BS01 A12 6.3.4.18 GO:0000166 ... Q5NGE8 N/A
    247721 4mam:B (1.474) BS01 A12 6.3.4.18 GO:0000166 ... Q5NGE8 N/A
    247722 4man:A (2.07) BS01 1Y1 ? GO:0042981 ... P10415 23291630 BindingDB: Ki=<0.100000nM
    247723 4man:B (2.07) BS01 1Y1 ? GO:0042981 ... P10415 23291630 BindingDB: Ki=<0.100000nM
    247724 4mao:A (2.6) BS01 28D 2.7.11.1 GO:0004672 ... P18654 25153195
    247725 4mas:A (1.22) BS01 PCQ ? GO:0001523 ... P02766 N/A
    247726 4mas:B (1.22) BS01 PCQ ? GO:0001523 ... P02766 N/A
    247727 4mav:A (2.79) BS01 RIB ? GO:0005576 ... Q7YS85 N/A
    247728 4max:A (1.444) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    247729 4max:B (1.444) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    247730 4max:B (1.444) BS02 HEB ? GO:0005344 ... Q8RT58 23999883
    247731 4max:C (1.444) BS01 HEB ? GO:0005344 ... Q8RT58 23999883
    247732 4maz:A (1.6) BS01 MG 3.2.1.10 GO:0004553 ... O06994 24015933
    247733 4mb1:A (1.4) BS01 CA 3.2.1.10 GO:0004553 ... O06994 24015933
    247734 4mb2:A (2.19) BS01 ATP 6.3.2.36 GO:0015937 ... B6YXQ1 24021277
    247735 4mb2:B (2.19) BS01 ATP 6.3.2.36 GO:0015937 ... B6YXQ1 24021277
    247736 4mb2:C (2.19) BS01 ATP 6.3.2.36 GO:0015937 ... B6YXQ1 24021277
    247737 4mb2:C (2.19) BS02 ATP 6.3.2.36 GO:0015937 ... B6YXQ1 24021277
    247738 4mb2:D (2.19) BS01 ATP 6.3.2.36 GO:0015937 ... B6YXQ1 24021277
    247739 4mb4:A (1.481) BS01 GLY 3.2.1.14 GO:0004553 ... B1VBB0 24598737
    247740 4mb4:A (1.481) BS02 GLY 3.2.1.14 GO:0004553 ... B1VBB0 24598737
    247741 4mb5:A (1.639) BS01 GLY 3.2.1.14 GO:0004553 ... B1VBB0 24598737
    247742 4mb7:A (2.04) BS01 ZN 3.2.2.23'
    '4.2.99.18
    GO:0003676 ... Q5UNW7 24120312
    247743 4mb9:A (1.85) BS01 28F N/A GO:0003677 ... N/A 24088190
    247744 4mba:A (2.0) BS01 HEM ? GO:0005506 ... P02210 2926816
    247745 4mba:A (2.0) BS02 IMD ? GO:0005506 ... P02210 2926816
    247746 4mbb:A (1.849) BS01 CL 3.1.3.- GO:0006470 ... O75319 24447265
    247747 4mbb:A (1.849) BS02 PO4 3.1.3.- GO:0006470 ... O75319 24447265
    247748 4mbc:A (1.75) BS01 28G N/A GO:0003677 ... N/A 24088190
    247749 4mbe:A (2.612) BS01 CA ? GO:0000226 ... P06704 24705649
    247750 4mbe:A (2.612) BS02 CA ? GO:0000226 ... P06704 24705649
    247751 4mbe:B (2.612) BS01 peptide ? N/A P46674 24705649
    247752 4mbe:C (2.612) BS01 peptide ? GO:0000124 ... Q6WNK7 24705649
    247753 4mbe:C (2.612) BS02 peptide ? GO:0000124 ... Q6WNK7 24705649
    247754 4mbe:D (2.612) BS01 peptide ? GO:0000226 ... P06704 24705649
    247755 4mbe:D (2.612) BS02 CA ? GO:0000226 ... P06704 24705649
    247756 4mbe:D (2.612) BS03 CA ? GO:0000226 ... P06704 24705649
    247757 4mbe:E (2.612) BS01 peptide ? N/A P46674 24705649
    247758 4mbe:F (2.612) BS01 peptide ? GO:0000124 ... Q6WNK7 24705649
    247759 4mbe:F (2.612) BS02 peptide ? GO:0000124 ... Q6WNK7 24705649
    247760 4mbf:A (1.54) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247761 4mbf:A (1.54) BS02 MA4 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247762 4mbf:A (1.54) BS03 2AW 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247763 4mbf:A (1.54) BS04 2AW 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247764 4mbg:B (1.74) BS01 FPP 2.5.1.58 GO:0003824 ... Q4WPS9 24347326
    247765 4mbg:B (1.74) BS02 ZN 2.5.1.58 GO:0003824 ... Q4WPS9 24347326
    247766 4mbh:A (1.22) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247767 4mbh:A (1.22) BS02 0RJ 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247768 4mbi:A (2.3) BS01 26K 2.7.11.1 GO:0004672 ... P11309 24091081 BindingDB: IC50=7.0nM
    247769 4mbj:A (3.6) BS01 DFS 2.7.11.1 GO:0004672 ... P15056 24042006
    247770 4mbj:B (3.6) BS01 DFS 2.7.11.1 GO:0004672 ... P15056 24042006
    247771 4mbk:A (1.46) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247772 4mbk:A (1.46) BS02 SA2 3.5.2.6 GO:0008800 ... P0AD64 24454944
    247773 4mbl:A (2.6) BS01 26L 2.7.11.1 GO:0004672 ... P11309 24091081 BindingDB: IC50=2.9nM
    247774 4mbn:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    247775 4mbp:A (1.7) BS01 GLC ? GO:0005515 ... P0AEX9 9309217
    247776 4mbp:A (1.7) BS02 GLC ? GO:0005515 ... P0AEX9 9309217
    247777 4mbp:A (1.7) BS03 GLC ? GO:0005515 ... P0AEX9 9309217
    247778 4mbp:A (1.7) BS04 GLC ? GO:0005515 ... P0AEX9 9309217
    247779 4mbs:A (2.71) BS01 MRV ? GO:0004930 ... P00268
    P51681
    24030490
    247780 4mbs:A (2.71) BS02 ZN ? GO:0004930 ... P00268
    P51681
    24030490
    247781 4mbs:B (2.71) BS01 MRV ? GO:0004930 ... P00268
    P51681
    24030490
    247782 4mbs:B (2.71) BS02 ZN ? GO:0004930 ... P00268
    P51681
    24030490
    247783 4mbu:A (2.15) BS01 PO4 ? GO:0016747 ... A0A0H3JXG2 25118709
    247784 4mbu:B (2.15) BS01 PO4 ? GO:0016747 ... A0A0H3JXG2 25118709
    247785 4mby:A (1.48) BS01 SIA ? GO:0005198 ... P04010 24204265
    247786 4mby:A (1.48) BS02 GAL ? GO:0005198 ... P04010 24204265
    247787 4mby:B (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    247788 4mby:B (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    247789 4mby:C (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    247790 4mby:C (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    247791 4mby:D (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    247792 4mby:D (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    247793 4mby:E (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    247794 4mby:E (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    247795 4mby:F (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    247796 4mby:G (1.48) BS01 SIA ? GO:0005198 ... P04010 24204265
    247797 4mby:H (1.48) BS01 SIA ? GO:0005198 ... P04010 24204265
    247798 4mby:I (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265
    247799 4mby:I (1.48) BS02 SIA ? GO:0005198 ... P04010 24204265
    247800 4mby:J (1.48) BS01 GAL ? GO:0005198 ... P04010 24204265

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).