SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    251001 4nbt:D (1.48) BS01 NAD 1.1.1.100 GO:0004316 ... A9NFJ2 24212572
    251002 4nbu:A (1.34) BS01 NAI N/A N/A N/A 24212572
    251003 4nbu:B (1.34) BS01 NAI N/A N/A N/A 24212572
    251004 4nbu:B (1.34) BS02 CAA N/A N/A N/A 24212572
    251005 4nbu:C (1.34) BS01 NAI N/A N/A N/A 24212572
    251006 4nbu:D (1.34) BS01 NAI N/A N/A N/A 24212572
    251007 4nbw:A (2.0) BS01 NAD ? GO:0004316 ... A6G411 24212572
    251008 4nbw:B (2.0) BS01 NAD ? GO:0004316 ... A6G411 24212572
    251009 4nbw:C (2.0) BS01 NAD ? GO:0004316 ... A6G411 24212572
    251010 4nbw:D (2.0) BS01 NAD ? GO:0004316 ... A6G411 24212572
    251011 4nc3:A (2.8) BS01 ERM ? GO:0004930 ... P0ABE7
    P41595
    24357322
    251012 4nc3:A (2.8) BS02 CLR ? GO:0004930 ... P0ABE7
    P41595
    24357322
    251013 4nc4:A (1.75) BS01 MG ? N/A Q9FN03 26097745
    251014 4nc4:C (1.75) BS01 MG ? N/A Q9FN03 26097745
    251015 4nc5:A (2.513) BS01 FSI 3.2.1.18 GO:0004308 ... Q9Y3R4 24591206
    251016 4nc7:A (2.0) BS01 I3C ? GO:0006351 ... P12464 24937760
    251017 4nca:A (2.489) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251018 4nca:A (2.489) BS02 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251019 4nca:A (2.489) BS03 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251020 4nca:A (2.489) BS04 DT 3.1.24.- GO:0003676 ... Q746M7 24374628
    251021 4nca:A (2.489) BS05 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251022 4nca:A (2.489) BS06 DT 3.1.24.- GO:0003676 ... Q746M7 24374628
    251023 4nca:A (2.489) BS07 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251024 4nca:B (2.489) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251025 4nca:B (2.489) BS02 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251026 4nca:B (2.489) BS03 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251027 4nca:B (2.489) BS04 DT 3.1.24.- GO:0003676 ... Q746M7 24374628
    251028 4nca:B (2.489) BS05 DT 3.1.24.- GO:0003676 ... Q746M7 24374628
    251029 4nca:B (2.489) BS06 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251030 4nca:B (2.489) BS07 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251031 4ncb:A (2.189) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251032 4ncb:A (2.189) BS02 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251033 4ncb:A (2.189) BS03 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251034 4ncb:A (2.189) BS04 DT 3.1.24.- GO:0003676 ... Q746M7 24374628
    251035 4ncb:A (2.189) BS05 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251036 4ncb:A (2.189) BS06 DT 3.1.24.- GO:0003676 ... Q746M7 24374628
    251037 4ncb:A (2.189) BS07 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251038 4ncb:B (2.189) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251039 4ncb:B (2.189) BS02 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251040 4ncb:B (2.189) BS03 dna 3.1.24.- GO:0003676 ... Q746M7 24374628
    251041 4ncb:B (2.189) BS04 DT 3.1.24.- GO:0003676 ... Q746M7 24374628
    251042 4ncb:B (2.189) BS05 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251043 4ncb:B (2.189) BS06 MG 3.1.24.- GO:0003676 ... Q746M7 24374628
    251044 4nce:A (2.3) BS01 MGT ? N/A P31345 25019388
    251045 4nce:A (2.3) BS02 11H ? N/A P31345 25019388
    251046 4nce:A (2.3) BS03 11H ? N/A P31345 25019388
    251047 4ncf:A (3.015) BS01 GDP 3.6.5.3 GO:0003924 ... P39730 24686316
    251048 4ncf:B (3.015) BS01 GDP 3.6.5.3 GO:0003924 ... P39730 24686316
    251049 4ncg:A (2.58) BS01 2KW 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 24412110
    251050 4ncj:A (2.0) BS01 ADP ? GO:0005524 ... P58301 24493214
    251051 4ncj:A (2.0) BS02 BEF ? GO:0005524 ... P58301 24493214
    251052 4ncj:A (2.0) BS03 MG ? GO:0005524 ... P58301 24493214
    251053 4ncj:A (2.0) BS04 ADP ? GO:0005524 ... P58301 24493214
    251054 4ncj:A (2.0) BS05 BEF ? GO:0005524 ... P58301 24493214
    251055 4ncj:B (2.0) BS01 ADP ? GO:0005524 ... P58301 24493214
    251056 4ncj:B (2.0) BS02 BEF ? GO:0005524 ... P58301 24493214
    251057 4ncj:B (2.0) BS03 MG ? GO:0005524 ... P58301 24493214
    251058 4ncj:B (2.0) BS04 ADP ? GO:0005524 ... P58301 24493214
    251059 4ncj:B (2.0) BS05 BEF ? GO:0005524 ... P58301 24493214
    251060 4ncj:C (2.0) BS01 ADP ? GO:0005524 ... P58301 24493214
    251061 4ncj:C (2.0) BS02 BEF ? GO:0005524 ... P58301 24493214
    251062 4ncj:C (2.0) BS03 ADP ? GO:0005524 ... P58301 24493214
    251063 4ncj:C (2.0) BS04 BEF ? GO:0005524 ... P58301 24493214
    251064 4ncj:C (2.0) BS05 MG ? GO:0005524 ... P58301 24493214
    251065 4ncj:D (2.0) BS01 ADP ? GO:0005524 ... P58301 24493214
    251066 4ncj:D (2.0) BS02 BEF ? GO:0005524 ... P58301 24493214
    251067 4ncj:D (2.0) BS03 ADP ? GO:0005524 ... P58301 24493214
    251068 4ncj:D (2.0) BS04 BEF ? GO:0005524 ... P58301 24493214
    251069 4ncj:D (2.0) BS05 MG ? GO:0005524 ... P58301 24493214
    251070 4ncl:A (2.115) BS01 GDP 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    251071 4ncl:B (2.115) BS01 GDP 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    251072 4ncm:A (2.82) BS01 704 ? N/A P31345 25019388
    251073 4ncn:A (1.87) BS01 GTP 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    251074 4ncn:A (1.87) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    251075 4ncn:B (1.87) BS01 GTP 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    251076 4ncn:B (1.87) BS02 MG 3.6.5.3 GO:0003924 ... G0S8G9 24686316
    251077 4ncr:A (1.881) BS01 26J 1.1.98.3 GO:0003885 ... P9WJF1 24500695
    251078 4ncr:A (1.881) BS02 FAD 1.1.98.3 GO:0003885 ... P9WJF1 24500695
    251079 4ncr:B (1.881) BS01 26J 1.1.98.3 GO:0003885 ... P9WJF1 24500695
    251080 4ncr:B (1.881) BS02 FAD 1.1.98.3 GO:0003885 ... P9WJF1 24500695
    251081 4ncs:A (2.201) BS01 FSR 3.2.1.18 GO:0004308 ... Q9Y3R4 24591206
    251082 4nct:A (2.597) BS01 2K2 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 25945585 BindingDB: Kd=100nM
    251083 4nct:B (2.597) BS01 2K2 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 25945585 BindingDB: Kd=100nM
    251084 4nct:C (2.597) BS01 2K2 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 25945585 BindingDB: Kd=100nM
    251085 4nct:D (2.597) BS01 2K2 2.7.11.23
    2.7.12.1
    GO:0004672 ... Q13627 25945585 BindingDB: Kd=100nM
    251086 4ncy:A (1.42) BS01 CA 3.4.21.4 GO:0004175 ... P00760 24816088
    251087 4ncz:A (1.89) BS01 CA 2.3.1.57 GO:0000287 ... Q9KL03 25623305
    251088 4ncz:B (1.89) BS01 CA 2.3.1.57 GO:0000287 ... Q9KL03 25623305
    251089 4ncz:C (1.89) BS01 CA 2.3.1.57 GO:0000287 ... Q9KL03 25623305
    251090 4nd1:A (2.15) BS01 NAD 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251091 4nd1:B (2.15) BS01 NAD 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251092 4nd2:A (2.0) BS01 A3D 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251093 4nd2:A (2.0) BS02 PYR 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251094 4nd2:B (2.0) BS01 A3D 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251095 4nd2:B (2.0) BS02 PYR 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251096 4nd3:A (2.05) BS01 NAD 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251097 4nd3:B (2.05) BS01 NAD 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251098 4nd4:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251099 4nd4:A (2.2) BS02 PYR 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251100 4nd4:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251101 4nd4:B (2.2) BS02 PYR 1.1.1.27 GO:0003824 ... Q5CYZ2 25542170
    251102 4nd8:A (2.0) BS01 ICS 1.18.6.1 GO:0009399 ... P07328 24392967
    251103 4nd8:A (2.0) BS02 1CL 1.18.6.1 GO:0009399 ... P07328 24392967
    251104 4nd8:B (2.0) BS01 1CL 1.18.6.1 GO:0009399 ... P07329 24392967
    251105 4nd8:B (2.0) BS02 FE 1.18.6.1 GO:0009399 ... P07329 24392967
    251106 4nd8:B (2.0) BS03 FE 1.18.6.1 GO:0009399 ... P07329 24392967
    251107 4nd8:C (2.0) BS01 ICS 1.18.6.1 GO:0009399 ... P07328 24392967
    251108 4nd8:C (2.0) BS02 1CL 1.18.6.1 GO:0009399 ... P07328 24392967
    251109 4nd8:D (2.0) BS01 FE 1.18.6.1 GO:0009399 ... P07329 24392967
    251110 4nd8:D (2.0) BS02 1CL 1.18.6.1 GO:0009399 ... P07329 24392967
    251111 4nd8:D (2.0) BS03 FE 1.18.6.1 GO:0009399 ... P07329 24392967
    251112 4nda:A (1.7) BS01 NIY 6.1.1.1 GO:0000166 ... Q57834 24611875
    251113 4ndb:A (2.0) BS01 CA ? N/A O76764 25760610
    251114 4ndb:A (2.0) BS02 CA ? N/A O76764 25760610
    251115 4ndb:A (2.0) BS03 CA ? N/A O76764 25760610
    251116 4ndb:B (2.0) BS01 CA ? N/A O76764 25760610
    251117 4ndb:B (2.0) BS02 CA ? N/A O76764 25760610
    251118 4ndb:B (2.0) BS03 CA ? N/A O76764 25760610
    251119 4ndc:A (2.0) BS01 CA ? N/A O76764 25760610
    251120 4ndc:A (2.0) BS02 CA ? N/A O76764 25760610
    251121 4ndc:A (2.0) BS03 CA ? N/A O76764 25760610
    251122 4ndc:B (2.0) BS01 CA ? N/A O76764 25760610
    251123 4ndc:B (2.0) BS02 CA ? N/A O76764 25760610
    251124 4ndc:B (2.0) BS03 CA ? N/A O76764 25760610
    251125 4ndd:A (2.9) BS01 CA ? N/A O76764 25760610
    251126 4ndd:A (2.9) BS02 CA ? N/A O76764 25760610
    251127 4ndd:A (2.9) BS03 CA ? N/A O76764 25760610
    251128 4ndd:B (2.9) BS01 CA ? N/A O76764 25760610
    251129 4ndd:B (2.9) BS02 CA ? N/A O76764 25760610
    251130 4ndd:B (2.9) BS03 CA ? N/A O76764 25760610
    251131 4ndf:A (1.944) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251132 4ndf:A (1.944) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251133 4ndf:A (1.944) BS03 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251134 4ndf:A (1.944) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251135 4ndf:B (1.944) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251136 4ndf:B (1.944) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251137 4ndf:B (1.944) BS03 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251138 4ndf:B (1.944) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251139 4ndg:A (2.541) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251140 4ndg:A (2.541) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251141 4ndg:A (2.541) BS03 V5A 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251142 4ndg:A (2.541) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251143 4ndg:B (2.541) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251144 4ndg:B (2.541) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251145 4ndg:B (2.541) BS03 V5A 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251146 4ndg:B (2.541) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251147 4ndh:A (1.848) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251148 4ndh:A (1.848) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251149 4ndh:A (1.848) BS03 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251150 4ndh:A (1.848) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251151 4ndh:B (1.848) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251152 4ndh:B (1.848) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251153 4ndh:B (1.848) BS03 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251154 4ndh:B (1.848) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251155 4ndi:A (1.9) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251156 4ndi:A (1.9) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251157 4ndi:A (1.9) BS03 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251158 4ndi:A (1.9) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251159 4ndi:B (1.9) BS01 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251160 4ndi:B (1.9) BS02 dna 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251161 4ndi:B (1.9) BS03 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251162 4ndi:B (1.9) BS04 ZN 3.6.1.71
    3.6.1.72
    GO:0003824 ... Q7Z2E3 24362567
    251163 4ndn:A (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    251164 4ndn:A (2.34) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 25075345
    251165 4ndn:B (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    251166 4ndn:B (2.34) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 25075345
    251167 4ndn:C (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    251168 4ndn:C (2.34) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 25075345
    251169 4ndn:D (2.34) BS01 PPK 2.5.1.6 GO:0004478 ... P31153 25075345
    251170 4ndn:D (2.34) BS02 SAM 2.5.1.6 GO:0004478 ... P31153 25075345
    251171 4ndo:A (1.35) BS01 8M0 ? GO:0005737 ... P84308 24945101
    251172 4ndo:A (1.35) BS02 ATP ? GO:0005737 ... P84308 24945101
    251173 4ndo:A (1.35) BS03 MG ? GO:0005737 ... P84308 24945101
    251174 4ndo:A (1.35) BS04 8M0 ? GO:0005737 ... P84308 24945101
    251175 4ndo:B (1.35) BS01 ATP ? GO:0005737 ... P84253 24945101
    251176 4ndo:B (1.35) BS02 8M0 ? GO:0005737 ... P84253 24945101
    251177 4ndp:A (1.6) BS01 8M0 ? GO:0005737 ... P84308 24945101
    251178 4ndp:A (1.6) BS02 ATP ? GO:0005737 ... P84308 24945101
    251179 4ndp:A (1.6) BS03 8M0 ? GO:0005737 ... P84308 24945101
    251180 4ndp:A (1.6) BS04 MG ? GO:0005737 ... P84308 24945101
    251181 4ndp:B (1.6) BS01 ATP ? GO:0005737 ... P84253 24945101
    251182 4ndp:B (1.6) BS02 8M0 ? GO:0005737 ... P84253 24945101
    251183 4ndq:A (1.751) BS01 8M0 ? GO:0005737 ... P84308 24945101
    251184 4ndq:A (1.751) BS02 ATP ? GO:0005737 ... P84308 24945101
    251185 4ndq:A (1.751) BS03 MG ? GO:0005737 ... P84308 24945101
    251186 4ndq:A (1.751) BS04 8M0 ? GO:0005737 ... P84308 24945101
    251187 4ndq:B (1.751) BS01 ATP ? GO:0005737 ... P84253 24945101
    251188 4ndq:B (1.751) BS02 8M0 ? GO:0005737 ... P84253 24945101
    251189 4ndr:A (2.0) BS01 8M0 ? GO:0005737 ... P84308 24945101
    251190 4ndr:A (2.0) BS02 ATP ? GO:0005737 ... P84308 24945101
    251191 4ndr:A (2.0) BS03 MG ? GO:0005737 ... P84308 24945101
    251192 4ndr:A (2.0) BS04 8M0 ? GO:0005737 ... P84308 24945101
    251193 4ndr:B (2.0) BS01 ATP ? GO:0005737 ... P84253 24945101
    251194 4ndr:B (2.0) BS02 8M0 ? GO:0005737 ... P84253 24945101
    251195 4ndu:A (1.301) BS01 AMG ? GO:0005534 ... A7UNK4 25504801
    251196 4ndu:B (1.301) BS01 AMG ? GO:0005534 ... A7UNK4 25504801
    251197 4ndv:A (1.3) BS01 GLA ? GO:0005534 ... A7UNK4 25504801
    251198 4ndx:A (1.496) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    251199 4ndx:A (1.496) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    251200 4ndy:I (6.999) BS01 dna ? GO:0046982 ... Q8N2Z9 24390579

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).