SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    252001 4nm9:A (1.898) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252002 4nm9:B (1.898) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252003 4nma:A (2.101) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252004 4nma:A (2.101) BS02 TFB 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252005 4nma:B (2.101) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252006 4nma:B (2.101) BS02 TFB 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252007 4nmb:A (2.198) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252008 4nmb:B (2.198) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252009 4nmc:A (1.901) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252010 4nmc:B (1.901) BS01 FAD 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252011 4nmd:A (1.979) BS01 FDA 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252012 4nmd:B (1.979) BS01 FDA 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252013 4nme:A (2.088) BS01 P5F 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252014 4nme:B (2.088) BS01 P5F 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252015 4nmf:A (1.95) BS01 P5F 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252016 4nmf:A (1.95) BS02 2L3 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252017 4nmf:B (1.95) BS01 P5F 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252018 4nmf:B (1.95) BS02 2L3 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252019 4nmf:B (1.95) BS03 2LB 1.2.1.88 GO:0003700 ... Q746X3 24550478
    252020 4nmh:A (2.9) BS01 2KG 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252021 4nmh:A (2.9) BS02 NDP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252022 4nmh:B (2.9) BS01 2KG 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252023 4nmh:B (2.9) BS02 NDP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252024 4nmh:C (2.9) BS01 2KG 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252025 4nmh:C (2.9) BS02 NDP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252026 4nmh:D (2.9) BS01 2KG 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252027 4nmh:D (2.9) BS02 NDP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P50172 N/A
    252028 4nmj:A (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252029 4nmj:B (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252030 4nmj:C (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252031 4nmj:D (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252032 4nmj:E (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252033 4nmj:F (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252034 4nmj:G (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252035 4nmj:H (2.002) BS01 NAP 1.2.1.- GO:0016491 ... G7VCG0 N/A
    252036 4nmk:A () BS01 NAP 1.2.1.- N/A N/A N/A
    252037 4nmk:B () BS01 NAP 1.2.1.- N/A N/A N/A
    252038 4nmk:C () BS01 NAP 1.2.1.- N/A N/A N/A
    252039 4nmk:D () BS01 NAP 1.2.1.- N/A N/A N/A
    252040 4nmk:E () BS01 NAP 1.2.1.- N/A N/A N/A
    252041 4nmk:F () BS01 NAP 1.2.1.- N/A N/A N/A
    252042 4nmk:G () BS01 NAP 1.2.1.- N/A N/A N/A
    252043 4nmk:H () BS01 NAP 1.2.1.- N/A N/A N/A
    252044 4nmm:A (1.89) BS01 Y9Z 3.6.5.2 GO:0003924 ... P01116 24889603
    252045 4nmn:A (3.301) BS01 ADP 3.6.4.12 GO:0003677 ... O67450 24373746
    252046 4nmn:A (3.301) BS02 MG 3.6.4.12 GO:0003677 ... O67450 24373746
    252047 4nmn:B (3.301) BS01 ADP 3.6.4.12 GO:0003677 ... O67450 24373746
    252048 4nmn:B (3.301) BS02 ADP 3.6.4.12 GO:0003677 ... O67450 24373746
    252049 4nmo:A (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252050 4nmo:B (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252051 4nmo:B (1.4) BS02 peptide ? GO:0005794 ... Q9HD26 25136860
    252052 4nmp:A (1.3) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252053 4nmp:B (1.3) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252054 4nmp:B (1.3) BS02 peptide ? GO:0005794 ... Q9HD26 25136860
    252055 4nmq:A (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252056 4nmq:B (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252057 4nmq:B (1.4) BS02 peptide ? GO:0005794 ... Q9HD26 25136860
    252058 4nmr:A (1.55) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252059 4nmr:B (1.55) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252060 4nmr:B (1.55) BS02 peptide ? GO:0005794 ... Q9HD26 25136860
    252061 4nms:A (1.7) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252062 4nms:B (1.7) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252063 4nms:B (1.7) BS02 peptide ? GO:0005794 ... Q9HD26 25136860
    252064 4nmt:A (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252065 4nmt:B (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252066 4nmt:B (1.4) BS02 peptide ? GO:0005794 ... Q9HD26 25136860
    252067 4nmv:A (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252068 4nmv:B (1.4) BS01 peptide ? GO:0005794 ... Q9HD26 25136860
    252069 4nmv:B (1.4) BS02 peptide ? GO:0005794 ... Q9HD26 25136860
    252070 4nmx:B (1.85) BS01 peptide 3.4.21.- GO:0004252 ... Q8NBP7 24225950
    252071 4nmy:A (1.896) BS01 VIB ? GO:0009228 ... Q187U0 37747257
    252072 4nmy:B (1.896) BS01 VIB ? GO:0009228 ... Q187U0 37747257
    252073 4nmz:A (1.7) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    252074 4nmz:A (1.7) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    252075 4nn2:A (1.472) BS01 ZN ? N/A Q8IWS0 N/A
    252076 4nn2:A (1.472) BS02 ZN ? N/A Q8IWS0 N/A
    252077 4nn2:A (1.472) BS03 ZN ? N/A Q8IWS0 N/A
    252078 4nn2:B (1.472) BS01 ZN ? N/A Q8IWS0 N/A
    252079 4nn2:B (1.472) BS02 ZN ? N/A Q8IWS0 N/A
    252080 4nn2:B (1.472) BS03 ZN ? N/A Q8IWS0 N/A
    252081 4nn9:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... P03472 1920429
    252082 4nna:A (2.103) BS01 MG 4.1.3.- GO:0043720 ... N/A 24616091
    252083 4nnb:A (2.0) BS01 MG 4.1.3.- GO:0043720 ... N/A 24616091
    252084 4nnb:A (2.0) BS02 OAA 4.1.3.- GO:0043720 ... N/A 24616091
    252085 4nnc:A (2.279) BS01 CO 4.1.3.- GO:0043720 ... N/A 24616091
    252086 4nnc:A (2.279) BS02 OXL 4.1.3.- GO:0043720 ... N/A 24616091
    252087 4nnc:A (2.279) BS03 2KQ 4.1.3.- GO:0043720 ... N/A 24616091
    252088 4nnd:A (2.502) BS01 peptide 3.1.3.48 GO:0004725 ... Q99952 N/A
    252089 4nnd:B (2.502) BS01 peptide 3.1.3.48 GO:0004725 ... Q99952 N/A
    252090 4nnd:D (2.502) BS01 peptide 3.1.3.48 GO:0004725 ... Q99952 N/A
    252091 4nnd:G (2.502) BS01 peptide 3.1.3.48 GO:0004725 ... Q99952 N/A
    252092 4nni:A (2.64) BS01 VGL ? GO:0003676 ... P9WH43 25430994
    252093 4nni:A (2.64) BS02 VGL ? GO:0003676 ... P9WH43 25430994
    252094 4nni:B (2.64) BS01 VGL ? GO:0003676 ... P9WH43 25430994
    252095 4nni:B (2.64) BS02 VGL ? GO:0003676 ... P9WH43 25430994
    252096 4nnj:A (2.4) BS01 AMP 6.2.1.45 GO:0004839 ... P22515 24816100
    252097 4nnj:C (2.4) BS01 AMP 6.2.1.45 GO:0004839 ... P22515 24816100
    252098 4nnl:A (1.5) BS01 peptide ? N/A O14907 41419168
    252099 4nnl:B (1.5) BS01 peptide ? N/A O14907 41419168
    252100 4nnm:A (1.6) BS01 peptide ? GO:0001650 ... O14907 41419168
    252101 4nnm:B (1.6) BS01 peptide ? GO:0001650 ... O14907 41419168
    252102 4nnn:G (2.5) BS01 MG 3.4.25.1 GO:0003674 ... P21243 24403024
    252103 4nnn:H (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P25043 24403024
    252104 4nnn:I (2.5) BS01 MG 3.4.25.1 GO:0005515 ... P25451 24403024
    252105 4nnn:K (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P30656 24403024
    252106 4nnn:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252107 4nnn:N (2.5) BS01 ALD 3.4.25.1 GO:0004175 ... P38624 24403024
    252108 4nnn:N (2.5) BS02 MG 3.4.25.1 GO:0004175 ... P38624 24403024
    252109 4nnn:V (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P25043 24403024
    252110 4nnn:V (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    252111 4nnn:V (2.5) BS03 ALD 3.4.25.1 GO:0004298 ... P25043 24403024
    252112 4nnn:Y (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P30656 24403024
    252113 4nnn:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252114 4nnn:Z (2.5) BS01 MG 3.4.25.1 GO:0003674 ... P23724 24403024
    252115 4nnn:b (2.5) BS01 ALD 3.4.25.1 GO:0004175 ... P38624 24403024
    252116 4nno:A (1.174) BS01 ZN ? GO:0007155 ... A0A0H3JTS7 25752540
    252117 4nnr:A (1.98) BS01 FK5 5.2.1.8 GO:0000413 ... P26885 N/A
    252118 4nnr:B (1.98) BS01 FK5 5.2.1.8 GO:0000413 ... P26885 N/A
    252119 4nnt:A (1.53) BS01 76D ? GO:0005319 ... P15090 N/A BindingDB: IC50=4000nM
    252120 4nnu:A (2.81) BS01 dna ? N/A Q00059 24435062
    252121 4nnu:A (2.81) BS02 dna ? N/A Q00059 24435062
    252122 4nnu:A (2.81) BS03 dna ? N/A Q00059 24435062
    252123 4nnu:B (2.81) BS01 dna ? N/A Q00059 24435062
    252124 4nnu:B (2.81) BS02 dna ? N/A Q00059 24435062
    252125 4nnu:B (2.81) BS03 dna ? N/A Q00059 24435062
    252126 4nnw:G (2.6) BS01 MG ? GO:0003674 ... P21243 24403024
    252127 4nnw:H (2.6) BS01 2MK 3.4.25.1 GO:0004298 ... P25043 24403024
    252128 4nnw:I (2.6) BS01 MG ? GO:0005515 ... P25451 24403024
    252129 4nnw:K (2.6) BS01 2MK 3.4.25.1 GO:0004298 ... P30656 24403024
    252130 4nnw:K (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252131 4nnw:N (2.6) BS01 2MK 3.4.25.1 GO:0004175 ... P38624 24403024
    252132 4nnw:N (2.6) BS02 MG 3.4.25.1 GO:0004175 ... P38624 24403024
    252133 4nnw:V (2.6) BS01 2MK 3.4.25.1 GO:0004298 ... P25043 24403024
    252134 4nnw:V (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    252135 4nnw:V (2.6) BS03 2MK 3.4.25.1 GO:0004298 ... P25043 24403024
    252136 4nnw:Y (2.6) BS01 2MK 3.4.25.1 GO:0004298 ... P30656 24403024
    252137 4nnw:Y (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252138 4nnw:Z (2.6) BS01 MG ? GO:0003674 ... P23724 24403024
    252139 4nnw:b (2.6) BS01 2MK 3.4.25.1 GO:0004175 ... P38624 24403024
    252140 4nnx:A (2.104) BS01 peptide ? N/A P04439 28903331
    252141 4nny:A (1.9) BS01 peptide ? N/A P04439 28903331
    252142 4no0:A (2.7) BS01 peptide ? N/A P04439 28903331
    252143 4no1:G (2.5) BS01 MG 3.4.25.1 GO:0003674 ... P21243 24403024
    252144 4no1:I (2.5) BS01 MG 3.4.25.1 GO:0005515 ... P25451 24403024
    252145 4no1:K (2.5) BS01 CIX 3.4.25.1 GO:0004298 ... P30656 24403024
    252146 4no1:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252147 4no1:N (2.5) BS01 MG 3.4.25.1 GO:0004175 ... P38624 24403024
    252148 4no1:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    252149 4no1:Y (2.5) BS01 CIX 3.4.25.1 GO:0004298 ... P30656 24403024
    252150 4no1:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252151 4no1:Z (2.5) BS01 MG 3.4.25.1 GO:0003674 ... P23724 24403024
    252152 4no2:A (2.0) BS01 peptide ? N/A P04439 28903331
    252153 4no3:A (1.703) BS01 peptide ? N/A P04439 28903331
    252154 4no4:A (1.399) BS01 BGC ? GO:0005515 ... P11762 N/A
    252155 4no4:A (1.399) BS02 GAL ? GO:0005515 ... P11762 N/A
    252156 4no4:A (1.399) BS03 MG ? GO:0005515 ... P11762 N/A
    252157 4no4:B (1.399) BS01 BGC ? GO:0005515 ... P11762 N/A
    252158 4no4:B (1.399) BS02 GAL ? GO:0005515 ... P11762 N/A
    252159 4no4:C (1.399) BS01 BGC ? GO:0005515 ... P11762 N/A
    252160 4no4:C (1.399) BS02 GAL ? GO:0005515 ... P11762 N/A
    252161 4no4:C (1.399) BS03 MG ? GO:0005515 ... P11762 N/A
    252162 4no4:D (1.399) BS01 BGC ? GO:0005515 ... P11762 N/A
    252163 4no4:D (1.399) BS02 GAL ? GO:0005515 ... P11762 N/A
    252164 4no4:E (1.399) BS01 BGC ? GO:0005515 ... P11762 N/A
    252165 4no4:E (1.399) BS02 GAL ? GO:0005515 ... P11762 N/A
    252166 4no4:F (1.399) BS01 BGC ? GO:0005515 ... P11762 N/A
    252167 4no4:F (1.399) BS02 GAL ? GO:0005515 ... P11762 N/A
    252168 4no4:F (1.399) BS03 MG ? GO:0005515 ... P11762 N/A
    252169 4no5:A (2.101) BS01 peptide ? N/A P04439 28903331
    252170 4no6:G (3.0) BS01 MG 3.4.25.1 GO:0003674 ... P21243 24403024
    252171 4no6:I (3.0) BS01 MG 3.4.25.1 GO:0005515 ... P25451 24403024
    252172 4no6:K (3.0) BS01 2M1 3.4.25.1 GO:0004298 ... P30656 24403024
    252173 4no6:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252174 4no6:L (3.0) BS01 2M1 3.4.25.1 GO:0003674 ... P23724 24403024
    252175 4no6:N (3.0) BS01 MG 3.4.25.1 GO:0004175 ... P38624 24403024
    252176 4no6:V (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    252177 4no6:Y (3.0) BS01 2M1 3.4.25.1 GO:0004298 ... P30656 24403024
    252178 4no6:Y (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252179 4no6:Z (3.0) BS01 MG 3.4.25.1 GO:0003674 ... P23724 24403024
    252180 4no7:A (1.7) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 22101819
    252181 4no7:A (1.7) BS02 2N8 2.7.1.1 GO:0001678 ... P35557 22101819 BindingDB: Kd=830nM, EC50=1420nM
    252182 4no8:G (2.7) BS01 MG 3.4.25.1 GO:0003674 ... P21243 24403024
    252183 4no8:I (2.7) BS01 MG 3.4.25.1 GO:0005515 ... P25451 24403024
    252184 4no8:K (2.7) BS01 2LV 3.4.25.1 GO:0004298 ... P30656 24403024
    252185 4no8:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252186 4no8:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    252187 4no8:Y (2.7) BS01 2LV 3.4.25.1 GO:0004298 ... P30656 24403024
    252188 4no8:Y (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252189 4no8:Z (2.7) BS01 MG 3.4.25.1 GO:0003674 ... P23724 24403024
    252190 4no9:G (2.9) BS01 MG 3.4.25.1 GO:0003674 ... P21243 24403024
    252191 4no9:H (2.9) BS01 2L0 3.4.25.1 GO:0004298 ... P25043 24403024
    252192 4no9:K (2.9) BS01 2L0 3.4.25.1 GO:0004298 ... P30656 24403024
    252193 4no9:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252194 4no9:N (2.9) BS01 MG 3.4.25.1 GO:0004175 ... P38624 24403024
    252195 4no9:V (2.9) BS01 2LR 3.4.25.1 GO:0004298 ... P25043 24403024
    252196 4no9:V (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P25043 24403024
    252197 4no9:Y (2.9) BS01 2L0 3.4.25.1 GO:0004298 ... P30656 24403024
    252198 4no9:Y (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 24403024
    252199 4no9:Z (2.9) BS01 MG 3.4.25.1 GO:0003674 ... P23724 24403024
    252200 4nod:A (2.897) BS01 dna ? N/A Q00059 24435062

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).