SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    256601 4p70:RN (3.68) BS01 rna ? GO:0003729 ... P60488 25128388
    256602 4p70:RO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    256603 4p70:RO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    256604 4p70:RP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    256605 4p70:RP (3.68) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    256606 4p70:RP (3.68) BS03 MG ? GO:0003735 ... Q5SHQ7 25128388
    256607 4p70:RQ (3.68) BS01 rna ? GO:0003735 ... P60489 25128388
    256608 4p70:RQ (3.68) BS02 rna ? GO:0003735 ... P60489 25128388
    256609 4p70:RR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    256610 4p70:RS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    256611 4p70:RS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    256612 4p70:RT (3.68) BS01 rna ? GO:0003735 ... P60490 25128388
    256613 4p70:RT (3.68) BS02 rna ? GO:0003735 ... P60490 25128388
    256614 4p70:RU (3.68) BS01 rna ? GO:0000027 ... P60491 25128388
    256615 4p70:RV (3.68) BS01 rna ? GO:0003723 ... P60492 25128388
    256616 4p70:RW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    256617 4p70:RX (3.68) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    256618 4p70:RY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    256619 4p70:RZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    256620 4p70:RZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    256621 4p70:XB (3.68) BS01 rna ? GO:0003735 ... P80371 25128388
    256622 4p70:XC (3.68) BS01 rna ? GO:0003676 ... P80372 25128388
    256623 4p70:XD (3.68) BS01 rna ? GO:0003723 ... P80373 25128388
    256624 4p70:XD (3.68) BS02 ZN ? GO:0003723 ... P80373 25128388
    256625 4p70:XE (3.68) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    256626 4p70:XF (3.68) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    256627 4p70:XG (3.68) BS01 rna ? GO:0000049 ... P17291 25128388
    256628 4p70:XH (3.68) BS01 rna N/A GO:0003735 ... P0DOY9 25128388
    256629 4p70:XI (3.68) BS01 rna ? GO:0003723 ... P80374 25128388
    256630 4p70:XI (3.68) BS02 rna ? GO:0003723 ... P80374 25128388
    256631 4p70:XJ (3.68) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    256632 4p70:XK (3.68) BS01 rna ? GO:0003735 ... P80376 25128388
    256633 4p70:XL (3.68) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    256634 4p70:XL (3.68) BS02 rna ? GO:0000049 ... Q5SHN3 25128388
    256635 4p70:XM (3.68) BS01 rna ? GO:0000049 ... P80377 25128388
    256636 4p70:XM (3.68) BS02 rna ? GO:0000049 ... P80377 25128388
    256637 4p70:XM (3.68) BS03 rna ? GO:0000049 ... P80377 25128388
    256638 4p70:XM (3.68) BS04 MG ? GO:0000049 ... P80377 25128388
    256639 4p70:XM (3.68) BS05 MG ? GO:0000049 ... P80377 25128388
    256640 4p70:XN (3.68) BS01 rna N/A GO:0003735 ... P0DOY6 25128388
    256641 4p70:XN (3.68) BS02 ZN N/A GO:0003735 ... P0DOY6 25128388
    256642 4p70:XO (3.68) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    256643 4p70:XO (3.68) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    256644 4p70:XP (3.68) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    256645 4p70:XQ (3.68) BS01 rna N/A GO:0003735 ... P0DOY7 25128388
    256646 4p70:XR (3.68) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    256647 4p70:XS (3.68) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    256648 4p70:XT (3.68) BS01 rna ? GO:0003723 ... P80380 25128388
    256649 4p70:Y0 (3.68) BS01 rna ? GO:0003735 ... P60493 25128388
    256650 4p70:Y0 (3.68) BS02 rna ? GO:0003735 ... P60493 25128388
    256651 4p70:Y0 (3.68) BS03 rna ? GO:0003735 ... P60493 25128388
    256652 4p70:Y1 (3.68) BS01 rna ? GO:0003735 ... P60494 25128388
    256653 4p70:Y2 (3.68) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    256654 4p70:Y3 (3.68) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    256655 4p70:Y3 (3.68) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    256656 4p70:Y4 (3.68) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    256657 4p70:Y4 (3.68) BS02 rna ? GO:0003735 ... Q5SJE1 25128388
    256658 4p70:Y5 (3.68) BS01 rna ? GO:0003735 ... P80339 25128388
    256659 4p70:Y6 (3.68) BS01 rna ? GO:0003735 ... P35871 25128388
    256660 4p70:Y7 (3.68) BS01 rna ? GO:0003735 ... P80340 25128388
    256661 4p70:Y8 (3.68) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    256662 4p70:Y9 (3.68) BS01 rna ? GO:0003735 ... Q5SHR2 25128388
    256663 4p70:YD (3.68) BS01 rna ? GO:0002181 ... P60405 25128388
    256664 4p70:YD (3.68) BS02 rna ? GO:0002181 ... P60405 25128388
    256665 4p70:YE (3.68) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    256666 4p70:YF (3.68) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    256667 4p70:YG (3.68) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    256668 4p70:YG (3.68) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    256669 4p70:YG (3.68) BS03 rna ? GO:0000049 ... Q5SHQ0 25128388
    256670 4p70:YH (3.68) BS01 rna N/A GO:0002181 ... P0DOY8 25128388
    256671 4p70:YI (3.68) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    256672 4p70:YI (3.68) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    256673 4p70:YN (3.68) BS01 rna ? GO:0003729 ... P60488 25128388
    256674 4p70:YO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    256675 4p70:YO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    256676 4p70:YP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    256677 4p70:YP (3.68) BS02 MG ? GO:0003735 ... Q5SHQ7 25128388
    256678 4p70:YQ (3.68) BS01 rna ? GO:0003735 ... P60489 25128388
    256679 4p70:YQ (3.68) BS02 rna ? GO:0003735 ... P60489 25128388
    256680 4p70:YR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    256681 4p70:YS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    256682 4p70:YS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    256683 4p70:YT (3.68) BS01 rna ? GO:0003735 ... P60490 25128388
    256684 4p70:YT (3.68) BS02 rna ? GO:0003735 ... P60490 25128388
    256685 4p70:YU (3.68) BS01 rna ? GO:0000027 ... P60491 25128388
    256686 4p70:YV (3.68) BS01 rna ? GO:0003723 ... P60492 25128388
    256687 4p70:YW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    256688 4p70:YX (3.68) BS01 rna ? GO:0003735 ... Q5SHP0 25128388
    256689 4p70:YX (3.68) BS02 MG ? GO:0003735 ... Q5SHP0 25128388
    256690 4p70:YY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    256691 4p70:YZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    256692 4p70:YZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 25128388
    256693 4p72:C (2.62) BS01 2NL 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256694 4p72:D (2.62) BS01 2NL 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256695 4p73:C (3.03) BS01 GAX 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256696 4p73:D (3.03) BS01 GAX 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256697 4p74:C (2.7) BS01 2U9 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256698 4p74:D (2.7) BS01 2U9 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256699 4p75:C (2.96) BS01 2NM 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256700 4p75:D (2.96) BS01 2NM 6.1.1.20 GO:0000049 ... Q9I0A3 24936059
    256701 4p77:A (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    256702 4p77:B (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    256703 4p7a:A (2.3) BS01 ADP ? GO:0005524 ... P40692 26249686
    256704 4p7e:A (2.4) BS01 2HB 2.7.10.2 GO:0004672 ... O60674 25369270 BindingDB: IC50=>10000nM
    256705 4p7e:B (2.4) BS01 2HB 2.7.10.2 GO:0004672 ... O60674 25369270 BindingDB: IC50=>10000nM
    256706 4p7i:A (2.6) BS01 peptide ? GO:0003779 ... P46662 24706749
    256707 4p7i:B (2.6) BS01 peptide ? GO:0003779 ... P46662 24706749
    256708 4p7k:A (1.22) BS01 SFG 2.1.1.6 GO:0000287 ... P22734 25084335
    256709 4p7m:A (3.02) BS01 2OE 5.3.2.1
    5.3.3.12
    GO:0004167 ... Q6Q3H7 25268646
    256710 4p7n:A (1.89) BS01 GCS 3.5.1.- GO:0016810 ... P75906 24994902
    256711 4p7n:A (1.89) BS02 GCS 3.5.1.- GO:0016810 ... P75906 24994902
    256712 4p7q:A (1.651) BS01 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    256713 4p7q:A (1.651) BS02 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    256714 4p7q:A (1.651) BS03 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    256715 4p7q:A (1.651) BS04 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    256716 4p7r:A (1.8) BS01 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    256717 4p7r:A (1.8) BS02 NAG 3.5.1.- GO:0016810 ... P75906 24994902
    256718 4p7s:A (2.87) BS01 2OK 5.3.2.1
    5.3.3.12
    GO:0004167 ... Q6Q3H7 25268646
    256719 4p7s:B (2.87) BS01 2OK 5.3.2.1
    5.3.3.12
    GO:0004167 ... Q6Q3H7 25268646
    256720 4p7s:B (2.87) BS02 2OK 5.3.2.1
    5.3.3.12
    GO:0004167 ... Q6Q3H7 25268646
    256721 4p7s:C (2.87) BS01 2OK 5.3.2.1
    5.3.3.12
    GO:0004167 ... Q6Q3H7 25268646
    256722 4p7u:A (1.502) BS01 1PS 2.7.11.30 GO:0005026 ... P37173 26073093
    256723 4p7w:A (1.8) BS01 CO 1.14.11.56 GO:0016706 ... Q989T9 25171735
    256724 4p7w:A (1.8) BS02 AKG 1.14.11.56 GO:0016706 ... Q989T9 25171735
    256725 4p7w:A (1.8) BS03 PRO 1.14.11.56 GO:0016706 ... Q989T9 25171735
    256726 4p7x:A (1.3) BS01 CO 1.14.11.56 GO:0016706 ... Q989T9 25171735
    256727 4p7x:A (1.3) BS02 AKG 1.14.11.56 GO:0016706 ... Q989T9 25171735
    256728 4p7x:A (1.3) BS03 YCP 1.14.11.56 GO:0016706 ... Q989T9 25171735
    256729 4p83:A (2.5) BS01 U5P N/A N/A N/A 25525255
    256730 4p83:B (2.5) BS01 U5P N/A N/A N/A 25525255
    256731 4p83:C (2.5) BS01 U5P N/A N/A N/A 25525255
    256732 4p83:D (2.5) BS01 U5P N/A N/A N/A 25525255
    256733 4p85:A (2.0) BS01 DEP N/A N/A N/A 25195758
    256734 4p85:B (2.0) BS01 DEP N/A N/A N/A 25195758
    256735 4p86:A (1.93) BS01 5GP N/A N/A N/A 25525255
    256736 4p86:B (1.93) BS01 5GP N/A N/A N/A 25525255
    256737 4p86:B (1.93) BS02 5GP N/A N/A N/A 25525255
    256738 4p86:C (1.93) BS01 5GP N/A N/A N/A 25525255
    256739 4p86:C (1.93) BS02 5GP N/A N/A N/A 25525255
    256740 4p86:C (1.93) BS03 5GP N/A N/A N/A 25525255
    256741 4p86:D (1.93) BS01 5GP N/A N/A N/A 25525255
    256742 4p87:A (1.999) BS01 4NP N/A N/A N/A 25195758
    256743 4p87:B (1.999) BS01 4NP N/A N/A N/A 25195758
    256744 4p8b:A (1.3) BS01 X2X ? GO:0030288 ... Q0KC03 25540822
    256745 4p8c:A (1.95) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256746 4p8c:A (1.95) BS02 Y22 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.12uM
    256747 4p8c:A (1.95) BS03 2J3 N/A GO:0003885 ... P9WJF1 25427196
    256748 4p8c:B (1.95) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256749 4p8c:B (1.95) BS02 Y22 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.12uM
    256750 4p8e:A (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    256751 4p8e:A (2.04) BS02 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    256752 4p8e:B (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    256753 4p8e:B (2.04) BS02 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    256754 4p8e:B (2.04) BS03 ZN 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    256755 4p8h:A (3.0) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    256756 4p8h:A (3.0) BS02 O95 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    256757 4p8h:B (3.0) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    256758 4p8h:B (3.0) BS02 O95 1.1.98.3 GO:0003885 ... P9WJF1 N/A
    256759 4p8k:A (2.49) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256760 4p8k:A (2.49) BS02 38C N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.041uM
    256761 4p8k:B (2.49) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256762 4p8k:B (2.49) BS02 38C N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.041uM
    256763 4p8l:A (2.02) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256764 4p8l:A (2.02) BS02 36C N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.072uM
    256765 4p8l:B (2.02) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256766 4p8l:B (2.02) BS02 36C N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.072uM
    256767 4p8m:A (2.09) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256768 4p8m:A (2.09) BS02 R58 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.088uM
    256769 4p8m:A (2.09) BS03 2J3 N/A GO:0003885 ... P9WJF1 25427196
    256770 4p8m:B (2.09) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256771 4p8m:B (2.09) BS02 R58 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.088uM
    256772 4p8n:A (1.79) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256773 4p8n:A (1.79) BS02 R57 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.08uM
    256774 4p8n:B (1.79) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256775 4p8n:B (1.79) BS02 R57 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.08uM
    256776 4p8o:A (2.4) BS01 883 5.6.2.2 GO:0003677 ... Q6GKU0 25317480
    256777 4p8o:B (2.4) BS01 883 5.6.2.2 GO:0003677 ... Q6GKU0 25317480
    256778 4p8p:A (2.2) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256779 4p8p:A (2.2) BS02 RG2 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.05uM
    256780 4p8p:A (2.2) BS03 2J3 N/A GO:0003885 ... P9WJF1 25427196
    256781 4p8p:B (2.2) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256782 4p8p:B (2.2) BS02 RG2 N/A GO:0003885 ... P9WJF1 25427196 MOAD: ic50=0.05uM
    256783 4p8q:A (3.02) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 25408552
    256784 4p8q:B (3.02) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 25408552
    256785 4p8r:A (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q38AR9 N/A
    256786 4p8r:A (2.2) BS02 MG 1.2.1.12 GO:0004365 ... Q38AR9 N/A
    256787 4p8r:B (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q38AR9 N/A
    256788 4p8r:B (2.2) BS02 MG 1.2.1.12 GO:0004365 ... Q38AR9 N/A
    256789 4p8r:C (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q38AR9 N/A
    256790 4p8r:D (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... Q38AR9 N/A
    256791 4p8r:D (2.2) BS02 MG 1.2.1.12 GO:0004365 ... Q38AR9 N/A
    256792 4p8t:A (2.55) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 25427196
    256793 4p8t:A (2.55) BS02 R26 1.1.98.3 GO:0003885 ... P9WJF1 25427196 BindingDB: IC50=67nM
    256794 4p8t:A (2.55) BS03 2J3 1.1.98.3 GO:0003885 ... P9WJF1 25427196
    256795 4p8t:B (2.55) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 25427196
    256796 4p8t:B (2.55) BS02 R26 1.1.98.3 GO:0003885 ... P9WJF1 25427196 BindingDB: IC50=67nM
    256797 4p8y:A (2.01) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256798 4p8y:A (2.01) BS02 38C N/A GO:0003885 ... P9WJF1 25427196
    256799 4p8y:B (2.01) BS01 FAD N/A GO:0003885 ... P9WJF1 25427196
    256800 4p90:A (2.49) BS01 2K0 2.7.11.1 GO:0004672 ... Q13153 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).