SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    257001 4pa7:A (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257002 4pa7:B (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257003 4pa7:B (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    257004 4pa7:C (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257005 4pa7:D (3.02) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257006 4pa7:D (3.02) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    257007 4pa8:A (1.2) BS01 2K6 N/A GO:0004425 ... N/A 25777153
    257008 4pa9:A (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257009 4pa9:B (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257010 4pa9:B (3.43) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    257011 4pa9:C (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257012 4pa9:D (3.43) BS01 2CV ? GO:0005216 ... A0L5S6 24850863
    257013 4pa9:D (3.43) BS02 2CV ? GO:0005216 ... A0L5S6 24850863
    257014 4paa:A (2.26) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    257015 4paa:A (2.26) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    257016 4paa:B (2.26) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    257017 4paa:B (2.26) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    257018 4pab:A (1.85) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    257019 4pab:A (1.85) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    257020 4pab:B (1.85) BS01 FAD 1.5.8.4 GO:0005542 ... Q63342 24858690
    257021 4pab:B (1.85) BS02 THG 1.5.8.4 GO:0005542 ... Q63342 24858690
    257022 4pad:A (2.8) BS01 TCK 3.4.22.2 GO:0006508 ... P00784 952885
    257023 4pae:A (3.206) BS01 HEB 1.11.1.21 GO:0004096 ... Q31MN3 25479089
    257024 4pae:A (3.206) BS02 NIZ 1.11.1.21 GO:0004096 ... Q31MN3 25479089
    257025 4pag:A (1.901) BS01 HIS ? GO:0071281 ... D1B4R1 N/A
    257026 4pah:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9843368
    257027 4pah:A (2.0) BS02 LNR 1.14.16.1 GO:0004497 ... P00439 9843368
    257028 4pai:A (1.4) BS01 3HB ? GO:0055085 ... Q5LSJ5 25540822
    257029 4pak:A (1.2) BS01 PAF ? GO:0030288 ... A1WPV4 25540822
    257030 4pal:A (1.8) BS01 MG ? GO:0005509 ... P02619 1880797
    257031 4pal:A (1.8) BS02 CA ? GO:0005509 ... P02619 1880797
    257032 4pam:A (2.101) BS01 GDP ? GO:0000287 ... P10824 25037222
    257033 4pam:A (2.101) BS02 SO3 ? GO:0000287 ... P10824 25037222
    257034 4pan:A (2.4) BS01 GDP ? GO:0000287 ... P10824 25037222
    257035 4pan:A (2.4) BS02 SO3 ? GO:0000287 ... P10824 25037222
    257036 4pao:A (2.003) BS01 GSP ? GO:0000287 ... P10824 25037222
    257037 4pao:A (2.003) BS02 MG ? GO:0000287 ... P10824 25037222
    257038 4paq:A (2.0) BS01 GSP ? GO:0000287 ... P10824 25037222
    257039 4paq:A (2.0) BS02 MG ? GO:0000287 ... P10824 25037222
    257040 4par:A (2.89) BS01 dna ? N/A B0VN39 24895434
    257041 4par:A (2.89) BS02 dna ? N/A B0VN39 24895434
    257042 4par:B (2.89) BS01 dna ? N/A B0VN39 24895434
    257043 4par:B (2.89) BS02 dna ? N/A B0VN39 24895434
    257044 4par:C (2.89) BS01 dna ? N/A B0VN39 24895434
    257045 4par:C (2.89) BS02 dna ? N/A B0VN39 24895434
    257046 4par:D (2.89) BS01 dna ? N/A B0VN39 24895434
    257047 4paw:A (2.23) BS01 ZN 2.4.2.10 GO:0000287 ... P56162 N/A
    257048 4paw:B (2.23) BS01 ZN 2.4.2.10 GO:0000287 ... P56162 N/A
    257049 4pax:A (2.8) BS01 NU1 2.4.2.-
    2.4.2.30
    GO:0003950 ... P26446 9521710
    257050 4paz:A (1.76) BS01 CU ? GO:0005507 ... P04377 9341204
    257051 4pb1:A (2.803) BS01 RBV ? GO:0005337 ... Q9KPL5 25082345
    257052 4pb2:A (2.302) BS01 5UD ? GO:0005337 ... Q9KPL5 25082345 MOAD: Kd=16uM
    257053 4pb3:A (1.7) BS01 PLP 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257054 4pb3:B (1.7) BS01 PLP 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257055 4pb4:A (1.8) BS01 PLP 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257056 4pb4:A (1.8) BS02 2KZ 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257057 4pb4:B (1.8) BS01 2KZ 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257058 4pb4:B (1.8) BS02 PLP 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257059 4pb4:B (1.8) BS03 2KZ 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257060 4pb5:A (1.9) BS01 PLP 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257061 4pb5:A (1.9) BS02 BH2 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257062 4pb5:A (1.9) BS03 BH2 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257063 4pb5:B (1.9) BS01 BH2 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257064 4pb5:B (1.9) BS02 PLP 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257065 4pb5:B (1.9) BS03 BH2 4.3.1.27 GO:0008721 ... B2DFG5 25715785
    257066 4pba:A (3.301) BS01 dna ? N/A B0VN39 24895434
    257067 4pba:B (3.301) BS01 dna ? N/A B0VN39 24895434
    257068 4pba:C (3.301) BS01 dna ? N/A B0VN39 24895434
    257069 4pba:C (3.301) BS02 dna ? N/A B0VN39 24895434
    257070 4pba:D (3.301) BS01 dna ? N/A B0VN39 24895434
    257071 4pbe:A (1.51) BS01 ZN 3.1.8.1 GO:0004063 ... A0A060GPP4 27618189
    257072 4pbe:A (1.51) BS02 ZN 3.1.8.1 GO:0004063 ... A0A060GPP4 27618189
    257073 4pbe:G (1.51) BS01 ZN 3.1.8.1 GO:0004063 ... A0A060GPP4 27618189
    257074 4pbe:G (1.51) BS02 ZN 3.1.8.1 GO:0004063 ... A0A060GPP4 27618189
    257075 4pbf:A (1.9) BS01 ZN ? GO:0004063 ... A0A060GTM0 27618189
    257076 4pbf:A (1.9) BS02 ZN ? GO:0004063 ... A0A060GTM0 27618189
    257077 4pbf:B (1.9) BS01 ZN ? GO:0004063 ... A0A060GTM0 27618189
    257078 4pbf:B (1.9) BS02 ZN ? GO:0004063 ... A0A060GTM0 27618189
    257079 4pbg:A (2.5) BS01 BGP 3.2.1.85 GO:0004553 ... P11546 9223646
    257080 4pbg:B (2.5) BS01 BGP 3.2.1.85 GO:0004553 ... P11546 9223646
    257081 4pbp:A (1.648) BS01 CA ? GO:0005576 ... Q0IIP8 25592778
    257082 4pbp:A (1.648) BS02 CA ? GO:0005576 ... Q0IIP8 25592778
    257083 4pbp:B (1.648) BS01 CA ? GO:0005576 ... Q0IIP8 25592778
    257084 4pbp:B (1.648) BS02 CA ? GO:0005576 ... Q0IIP8 25592778
    257085 4pbp:C (1.648) BS01 CA ? GO:0005576 ... Q0IIP8 25592778
    257086 4pbp:C (1.648) BS02 CA ? GO:0005576 ... Q0IIP8 25592778
    257087 4pbq:A (1.65) BS01 2UF N/A GO:0030288 ... N/A 25540822
    257088 4pbq:B (1.65) BS01 2UF N/A GO:0030288 ... N/A 25540822
    257089 4pbq:C (1.65) BS01 2UF N/A GO:0030288 ... N/A 25540822
    257090 4pbr:A (1.9) BS01 2L7 6.1.1.1 GO:0000166 ... Q57834 25044993
    257091 4pbs:A (2.011) BS01 2L7 6.1.1.1 GO:0000166 ... Q57834 25044993
    257092 4pbt:A (1.9) BS01 2LQ 6.1.1.1 GO:0000166 ... Q57834 25044993
    257093 4pbu:A (5.0) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 25043005
    257094 4pbu:A (5.0) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 25043005
    257095 4pbu:A (5.0) BS03 BCT 1.10.3.9 GO:0005506 ... P0A444 25043005
    257096 4pbu:A (5.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257097 4pbu:A (5.0) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257098 4pbu:A (5.0) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    257099 4pbu:A (5.0) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257100 4pbu:A (5.0) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257101 4pbu:A (5.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257102 4pbu:A (5.0) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    257103 4pbu:A (5.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257104 4pbu:B (5.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257105 4pbu:B (5.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257106 4pbu:B (5.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257107 4pbu:B (5.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257108 4pbu:B (5.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257109 4pbu:B (5.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257110 4pbu:B (5.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257111 4pbu:B (5.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257112 4pbu:B (5.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257113 4pbu:B (5.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257114 4pbu:B (5.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257115 4pbu:B (5.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257116 4pbu:B (5.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257117 4pbu:B (5.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257118 4pbu:B (5.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257119 4pbu:B (5.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257120 4pbu:C (5.0) BS01 OEX ? GO:0005737 ... Q8DIF8 25043005
    257121 4pbu:C (5.0) BS02 CLA ? GO:0005737 ... Q8DIF8 25043005
    257122 4pbu:C (5.0) BS03 CLA ? GO:0005737 ... Q8DIF8 25043005
    257123 4pbu:C (5.0) BS04 CLA ? GO:0005737 ... Q8DIF8 25043005
    257124 4pbu:C (5.0) BS05 CLA ? GO:0005737 ... Q8DIF8 25043005
    257125 4pbu:C (5.0) BS06 CLA ? GO:0005737 ... Q8DIF8 25043005
    257126 4pbu:C (5.0) BS07 CLA ? GO:0005737 ... Q8DIF8 25043005
    257127 4pbu:C (5.0) BS08 CLA ? GO:0005737 ... Q8DIF8 25043005
    257128 4pbu:C (5.0) BS09 CLA ? GO:0005737 ... Q8DIF8 25043005
    257129 4pbu:C (5.0) BS10 CLA ? GO:0005737 ... Q8DIF8 25043005
    257130 4pbu:C (5.0) BS11 CLA ? GO:0005737 ... Q8DIF8 25043005
    257131 4pbu:C (5.0) BS12 CLA ? GO:0005737 ... Q8DIF8 25043005
    257132 4pbu:C (5.0) BS13 CLA ? GO:0005737 ... Q8DIF8 25043005
    257133 4pbu:C (5.0) BS14 CLA ? GO:0005737 ... Q8DIF8 25043005
    257134 4pbu:D (5.0) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257135 4pbu:D (5.0) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257136 4pbu:D (5.0) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257137 4pbu:D (5.0) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257138 4pbu:D (5.0) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257139 4pbu:D (5.0) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257140 4pbu:D (5.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257141 4pbu:D (5.0) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257142 4pbu:D (5.0) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257143 4pbu:D (5.0) BS10 CLA 1.10.3.9 GO:0005506 ... Q8CM25 25043005
    257144 4pbu:E (5.0) BS01 HEM ? GO:0005506 ... Q8DIP0 25043005
    257145 4pbu:F (5.0) BS01 HEM ? GO:0009523 ... Q8DIN9 25043005
    257146 4pbu:H (5.0) BS01 CLA ? GO:0009523 ... Q8DJ43 25043005
    257147 4pbu:H (5.0) BS02 CLA ? GO:0009523 ... Q8DJ43 25043005
    257148 4pbu:H (5.0) BS03 CLA ? GO:0009523 ... Q8DJ43 25043005
    257149 4pbu:H (5.0) BS04 CLA ? GO:0009523 ... Q8DJ43 25043005
    257150 4pbu:H (5.0) BS05 CLA ? GO:0009523 ... Q8DJ43 25043005
    257151 4pbu:I (5.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 25043005
    257152 4pbu:J (5.0) BS01 peptide ? GO:0009523 ... P59087 25043005
    257153 4pbu:K (5.0) BS01 peptide ? GO:0009523 ... Q9F1K9 25043005
    257154 4pbu:K (5.0) BS02 CLA ? GO:0009523 ... Q9F1K9 25043005
    257155 4pbu:K (5.0) BS03 CLA ? GO:0009523 ... Q9F1K9 25043005
    257156 4pbu:O (5.0) BS01 CA ? GO:0009654 ... P0A431 25043005
    257157 4pbu:V (5.0) BS01 HEM ? GO:0005506 ... P0A386 25043005
    257158 4pbu:X (5.0) BS01 CLA ? GO:0009523 ... Q9F1R6 25043005
    257159 4pbu:Z (5.0) BS01 peptide ? GO:0009523 ... Q8DHJ2 25043005
    257160 4pbu:a (5.0) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 25043005
    257161 4pbu:a (5.0) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 25043005
    257162 4pbu:a (5.0) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257163 4pbu:a (5.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257164 4pbu:a (5.0) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257165 4pbu:a (5.0) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    257166 4pbu:a (5.0) BS07 BCT 1.10.3.9 GO:0005506 ... P0A444 25043005
    257167 4pbu:a (5.0) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257168 4pbu:a (5.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257169 4pbu:a (5.0) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 25043005
    257170 4pbu:a (5.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 25043005
    257171 4pbu:b (5.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257172 4pbu:b (5.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257173 4pbu:b (5.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257174 4pbu:b (5.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257175 4pbu:b (5.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257176 4pbu:b (5.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257177 4pbu:b (5.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257178 4pbu:b (5.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257179 4pbu:b (5.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257180 4pbu:b (5.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257181 4pbu:b (5.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257182 4pbu:b (5.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257183 4pbu:b (5.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257184 4pbu:b (5.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257185 4pbu:b (5.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257186 4pbu:b (5.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 25043005
    257187 4pbu:c (5.0) BS01 OEX ? GO:0005737 ... Q8DIF8 25043005
    257188 4pbu:c (5.0) BS02 CA ? GO:0005737 ... Q8DIF8 25043005
    257189 4pbu:c (5.0) BS03 CLA ? GO:0005737 ... Q8DIF8 25043005
    257190 4pbu:c (5.0) BS04 CLA ? GO:0005737 ... Q8DIF8 25043005
    257191 4pbu:c (5.0) BS05 CLA ? GO:0005737 ... Q8DIF8 25043005
    257192 4pbu:c (5.0) BS06 CLA ? GO:0005737 ... Q8DIF8 25043005
    257193 4pbu:c (5.0) BS07 CLA ? GO:0005737 ... Q8DIF8 25043005
    257194 4pbu:c (5.0) BS08 CLA ? GO:0005737 ... Q8DIF8 25043005
    257195 4pbu:c (5.0) BS09 CLA ? GO:0005737 ... Q8DIF8 25043005
    257196 4pbu:c (5.0) BS10 CLA ? GO:0005737 ... Q8DIF8 25043005
    257197 4pbu:c (5.0) BS11 CLA ? GO:0005737 ... Q8DIF8 25043005
    257198 4pbu:c (5.0) BS12 CLA ? GO:0005737 ... Q8DIF8 25043005
    257199 4pbu:c (5.0) BS13 CLA ? GO:0005737 ... Q8DIF8 25043005
    257200 4pbu:c (5.0) BS14 CLA ? GO:0005737 ... Q8DIF8 25043005

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).