SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 1aeh:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    2402 1aeh:A (2.1) BS02 24T 1.11.1.5 GO:0004601 ... P00431 11812152
    2403 1aei:A (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    2404 1aei:A (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    2405 1aei:A (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    2406 1aei:A (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    2407 1aei:B (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    2408 1aei:B (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    2409 1aei:B (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    2410 1aei:B (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    2411 1aei:C (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    2412 1aei:C (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    2413 1aei:C (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    2414 1aei:C (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    2415 1aei:D (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    2416 1aei:D (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    2417 1aei:D (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    2418 1aei:D (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    2419 1aei:E (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    2420 1aei:E (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    2421 1aei:E (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    2422 1aei:E (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    2423 1aei:F (2.8) BS01 CA ? GO:0001786 ... P26256 7477411
    2424 1aei:F (2.8) BS02 CA ? GO:0001786 ... P26256 7477411
    2425 1aei:F (2.8) BS03 CA ? GO:0001786 ... P26256 7477411
    2426 1aei:F (2.8) BS04 CA ? GO:0001786 ... P26256 7477411
    2427 1aej:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    2428 1aej:A (2.1) BS02 NVI 1.11.1.5 GO:0004601 ... P00431 11812152
    2429 1aek:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    2430 1aek:A (2.1) BS02 IDM 1.11.1.5 GO:0004601 ... P00431 11812152
    2431 1aem:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    2432 1aem:A (2.1) BS02 MPI 1.11.1.5 GO:0004601 ... P00431 11812152
    2433 1aen:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    2434 1aen:A (2.1) BS02 25T 1.11.1.5 GO:0004601 ... P00431 11812152
    2435 1aeo:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    2436 1aeo:A (2.1) BS02 2AP 1.11.1.5 GO:0004601 ... P00431 11812152
    2437 1aeq:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11812152
    2438 1aeq:A (2.1) BS02 2EZ 1.11.1.5 GO:0004601 ... P00431 11812152
    2439 1aer:A (2.3) BS01 TAD 2.4.2.36 GO:0047286 ... P11439 8692916
    2440 1aer:B (2.3) BS01 TIA 2.4.2.36 GO:0047286 ... P11439 8692916
    2441 1aer:B (2.3) BS02 AMP 2.4.2.36 GO:0047286 ... P11439 8692916
    2442 1aes:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    2443 1aes:A (2.1) BS02 IMD 1.11.1.5 GO:0004601 ... P00431 8673607
    2444 1aet:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    2445 1aet:A (2.1) BS02 1MZ 1.11.1.5 GO:0004601 ... P00431 8673607
    2446 1aeu:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    2447 1aeu:A (2.1) BS02 2MZ 1.11.1.5 GO:0004601 ... P00431 8673607
    2448 1aev:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 9305956
    2449 1aev:A (2.1) BS02 AMT 1.11.1.5 GO:0004601 ... P00431 9305956
    2450 1aex:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    2451 1aex:A (2.1) BS02 THP 3.1.31.1 GO:0003676 ... P00644 8762134
    2452 1af0:A (1.8) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 N/A
    2453 1af0:A (1.8) BS02 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    2454 1af0:A (1.8) BS03 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    2455 1af0:A (1.8) BS04 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    2456 1af0:A (1.8) BS05 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    2457 1af0:A (1.8) BS06 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    2458 1af0:A (1.8) BS07 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    2459 1af0:A (1.8) BS08 CA 3.4.24.40 GO:0001907 ... P23694 N/A
    2460 1af0:A (1.8) BS09 0Z9 3.4.24.40 GO:0001907 ... P23694 N/A
    2461 1af2:A (2.3) BS01 ZN 3.5.4.5 GO:0001884 ... P0ABF6 9125497
    2462 1af2:A (2.3) BS02 U 3.5.4.5 GO:0001884 ... P0ABF6 9125497
    2463 1af4:A (2.6) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9113975
    2464 1af6:A (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337
    2465 1af6:A (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    2466 1af6:B (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337
    2467 1af6:B (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    2468 1af6:C (2.4) BS01 GLC ? GO:0001618 ... P02943 9299337
    2469 1af6:C (2.4) BS02 FRU ? GO:0001618 ... P02943 9299337
    2470 1af7:A (2.0) BS01 SAH 2.1.1.80 GO:0006935 ... P07801 9115443
    2471 1afa:1 (2.0) BS01 MBG ? N/A P19999 8636086
    2472 1afa:1 (2.0) BS02 CA ? N/A P19999 8636086
    2473 1afa:1 (2.0) BS03 CA ? N/A P19999 8636086
    2474 1afa:2 (2.0) BS01 MBG ? N/A P19999 8636086
    2475 1afa:2 (2.0) BS02 CA ? N/A P19999 8636086
    2476 1afa:2 (2.0) BS03 CA ? N/A P19999 8636086
    2477 1afa:2 (2.0) BS04 CA ? N/A P19999 8636086
    2478 1afa:3 (2.0) BS01 MBG ? N/A P19999 8636086
    2479 1afa:3 (2.0) BS02 CA ? N/A P19999 8636086
    2480 1afa:3 (2.0) BS03 CA ? N/A P19999 8636086
    2481 1afb:1 (1.9) BS01 CA ? N/A P19999 8636086
    2482 1afb:1 (1.9) BS02 CA ? N/A P19999 8636086
    2483 1afb:2 (1.9) BS01 CA ? N/A P19999 8636086
    2484 1afb:2 (1.9) BS02 CA ? N/A P19999 8636086
    2485 1afb:2 (1.9) BS03 CA ? N/A P19999 8636086
    2486 1afb:3 (1.9) BS01 CA ? N/A P19999 8636086
    2487 1afb:3 (1.9) BS02 CA ? N/A P19999 8636086
    2488 1afc:A (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2489 1afc:A (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2490 1afc:B (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2491 1afc:B (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2492 1afc:C (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2493 1afc:C (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2494 1afc:D (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2495 1afc:D (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2496 1afc:E (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2497 1afc:E (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2498 1afc:F (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2499 1afc:F (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2500 1afc:G (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2501 1afc:G (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2502 1afc:H (2.7) BS01 GU4 ? GO:0005104 ... P03968 7520817
    2503 1afc:H (2.7) BS02 YYJ ? GO:0005104 ... P03968 7520817
    2504 1afd:1 (2.0) BS01 CA ? N/A P19999 8636086
    2505 1afd:1 (2.0) BS02 CA ? N/A P19999 8636086
    2506 1afd:2 (2.0) BS01 CA ? N/A P19999 8636086
    2507 1afd:2 (2.0) BS02 CA ? N/A P19999 8636086
    2508 1afd:3 (2.0) BS01 CA ? N/A P19999 8636086
    2509 1afd:3 (2.0) BS02 CA ? N/A P19999 8636086
    2510 1afe:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9217260
    2511 1afe:H (2.0) BS02 ALZ 3.4.21.5 GO:0004252 ... P00734 9217260
    2512 1afj:A (-1.00) BS01 HG ? GO:0015097 ... P04129 9188683
    2513 1afk:A (1.7) BS01 PAP 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=240nM
    2514 1afk:B (1.7) BS01 PAP 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=240nM
    2515 1afl:A (1.7) BS01 ATR 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=520nM
    2516 1afl:B (1.7) BS01 ATR 4.6.1.18 GO:0003676 ... P61823 9154942 MOAD: Ki=520nM
    2517 1afq:B (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9692896
    2518 1afq:B (1.8) BS02 0FG 3.4.21.1 GO:0004252 ... P00766 9692896
    2519 1afq:B (1.8) BS03 0FG 3.4.21.1 GO:0004252 ... P00766 9692896
    2520 1afq:C (1.8) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9692896
    2521 1afq:C (1.8) BS02 0FG 3.4.21.1 GO:0004252 ... P00766 9692896
    2522 1afr:A (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2523 1afr:A (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2524 1afr:B (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2525 1afr:B (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2526 1afr:C (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2527 1afr:C (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2528 1afr:D (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2529 1afr:D (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2530 1afr:E (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2531 1afr:E (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2532 1afr:F (2.4) BS01 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2533 1afr:F (2.4) BS02 FE2 1.14.19.2 GO:0006631 ... P22337 8861937
    2534 1afs:A (2.5) BS01 NAP 1.1.1.50 GO:0004032 ... P23457 9261071
    2535 1afs:A (2.5) BS02 TES 1.1.1.50 GO:0004032 ... P23457 9261071
    2536 1afs:B (2.5) BS01 NAP 1.1.1.50 GO:0004032 ... P23457 9261071
    2537 1afs:B (2.5) BS02 TES 1.1.1.50 GO:0004032 ... P23457 9261071
    2538 1ag0:A (2.4) BS01 CU ? GO:0005507 ... P00282 N/A
    2539 1ag0:B (2.4) BS01 CU ? GO:0005507 ... P00282 N/A
    2540 1ag1:T (2.36) BS01 PO4 5.3.1.1 GO:0004807 ... P04789 2040290
    2541 1ag6:A (1.6) BS01 CU ? GO:0005507 ... P00289 9792096
    2542 1ag9:A (1.8) BS01 CA ? GO:0005515 ... P61949 9416602
    2543 1ag9:A (1.8) BS02 FMN ? GO:0005515 ... P61949 9416602 MOAD: Kd=1nM
    2544 1ag9:A (1.8) BS03 BTB ? GO:0005515 ... P61949 9416602
    2545 1ag9:B (1.8) BS01 CA ? GO:0005515 ... P61949 9416602
    2546 1ag9:B (1.8) BS02 FMN ? GO:0005515 ... P61949 9416602 MOAD: Kd=1nM
    2547 1ag9:B (1.8) BS03 BTB ? GO:0005515 ... P61949 9416602
    2548 1agb:A (2.2) BS01 peptide ? N/A P01889 8976183
    2549 1agc:A (2.1) BS01 peptide ? N/A P01889 8976183
    2550 1agd:A (2.05) BS01 peptide ? N/A P01889 8976183
    2551 1age:A (2.3) BS01 peptide ? N/A P01889 8976183
    2552 1agf:A (2.2) BS01 peptide ? N/A P01889 8976183
    2553 1agm:A (2.3) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2554 1agm:A (2.3) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2555 1agm:A (2.3) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2556 1agm:A (2.3) BS04 GLC 3.2.1.3 GO:0004339 ... P69327 8195212
    2557 1agm:A (2.3) BS05 AC1 3.2.1.3 GO:0004339 ... P69327 8195212
    2558 1agm:A (2.3) BS06 GLC 3.2.1.3 GO:0004339 ... P69327 8195212
    2559 1agm:A (2.3) BS07 AC1 3.2.1.3 GO:0004339 ... P69327 8195212
    2560 1agm:A (2.3) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2561 1agm:A (2.3) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2562 1agm:A (2.3) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2563 1agm:A (2.3) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2564 1agm:A (2.3) BS12 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2565 1agm:A (2.3) BS13 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2566 1agm:A (2.3) BS14 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2567 1agm:A (2.3) BS15 MAN 3.2.1.3 GO:0004339 ... P69327 8195212
    2568 1agn:A (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2569 1agn:A (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2570 1agn:A (3.0) BS03 ACT 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2571 1agn:A (3.0) BS04 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2572 1agn:B (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2573 1agn:B (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2574 1agn:B (3.0) BS03 ACT 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2575 1agn:B (3.0) BS04 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2576 1agn:C (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2577 1agn:C (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2578 1agn:C (3.0) BS03 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2579 1agn:D (3.0) BS01 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2580 1agn:D (3.0) BS02 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2581 1agn:D (3.0) BS03 ZN 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2582 1agn:D (3.0) BS04 ACT 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2583 1agn:D (3.0) BS05 NAD 1.1.1.1
    1.1.1.105
    1.1.1.66
    GO:0001523 ... P40394 9228021
    2584 1agp:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 8357792
    2585 1agp:A (2.3) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 8357792
    2586 1agr:A (2.8) BS01 MG ? GO:0000287 ... P10824 9108480
    2587 1agr:A (2.8) BS02 ALF ? GO:0000287 ... P10824 9108480
    2588 1agr:A (2.8) BS03 GDP ? GO:0000287 ... P10824 9108480
    2589 1agr:D (2.8) BS01 MG ? GO:0000287 ... P10824 9108480
    2590 1agr:D (2.8) BS02 ALF ? GO:0000287 ... P10824 9108480
    2591 1agr:D (2.8) BS03 GDP ? GO:0000287 ... P10824 9108480
    2592 1agw:A (2.4) BS01 SU2 2.7.10.1 GO:0004672 ... P11362 9139660
    2593 1agw:B (2.4) BS01 SU2 2.7.10.1 GO:0004672 ... P11362 9139660
    2594 1ah0:A (2.3) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P80276 9195881
    2595 1ah0:A (2.3) BS02 SBI 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P80276 9195881 BindingDB: IC50=1100nM
    2596 1ah3:A (2.3) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P80276 9195881
    2597 1ah3:A (2.3) BS02 TOL 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P80276 9195881 BindingDB: IC50=16nM
    2598 1ah4:A (2.0) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P80276 9195881
    2599 1ah5:A (2.4) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 10089459
    2600 1ah7:A (1.501) BS01 ZN 3.1.4.3 GO:0004629 ... P09598 2493587

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).