SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    262001 4qor:A (1.95) BS03 2CH N/A GO:0004096 ... N/A 25663126
    262002 4qor:B (1.95) BS01 HEM N/A GO:0004096 ... N/A 25663126
    262003 4qor:B (1.95) BS02 HEM N/A GO:0004096 ... N/A 25663126
    262004 4qor:B (1.95) BS03 2CH N/A GO:0004096 ... N/A 25663126
    262005 4qor:B (1.95) BS04 2CH N/A GO:0004096 ... N/A 25663126
    262006 4qor:C (1.95) BS01 HEM N/A GO:0004096 ... N/A 25663126
    262007 4qor:C (1.95) BS02 HEM N/A GO:0004096 ... N/A 25663126
    262008 4qor:C (1.95) BS03 2CH N/A GO:0004096 ... N/A 25663126
    262009 4qor:D (1.95) BS01 HEM N/A GO:0004096 ... N/A 25663126
    262010 4qor:D (1.95) BS02 HEM N/A GO:0004096 ... N/A 25663126
    262011 4qor:D (1.95) BS03 2CH N/A GO:0004096 ... N/A 25663126
    262012 4qor:D (1.95) BS04 2CH N/A GO:0004096 ... N/A 25663126
    262013 4qos:A (1.42) BS01 ADP ? GO:0005524 ... P37344 25063294
    262014 4qot:A (2.2) BS01 PT 3.6.3.54 GO:0005507 ... O00244 27305454
    262015 4qot:B (2.2) BS01 PT 3.6.3.54 GO:0005507 ... O00244 27305454
    262016 4qot:B (2.2) BS02 PT 3.6.3.54 GO:0005507 ... O00244 27305454
    262017 4qox:A (2.748) BS01 MG 2.7.11.1 GO:0003824 ... Q8IBS5 N/A
    262018 4qox:A (2.748) BS02 DXR 2.7.11.1 GO:0003824 ... Q8IBS5 N/A
    262019 4qoz:B (2.304) BS01 rna 3.1.-.- GO:0000175 ... Q8IV48 25002523
    262020 4qoz:C (2.304) BS01 rna ? GO:0003723 ... Q14493 25002523
    262021 4qoz:E (2.304) BS01 rna 3.1.-.- GO:0000175 ... Q8IV48 25002523
    262022 4qp1:A (2.7) BS01 EMU 2.7.11.24 GO:0000165 ... P28482 26338362
    262023 4qp1:A (2.7) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    262024 4qp1:B (2.7) BS01 EMU 2.7.11.24 GO:0000165 ... P28482 26338362
    262025 4qp1:B (2.7) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    262026 4qp2:A (2.23) BS01 36R 2.7.11.24 GO:0000165 ... P28482 26338362 MOAD: Kd=940uM
    BindingDB: Kd=940000nM
    262027 4qp2:A (2.23) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    262028 4qp3:A (2.599) BS01 36Q 2.7.11.24 GO:0000165 ... P28482 26338362
    262029 4qp3:B (2.599) BS01 36Q 2.7.11.24 GO:0000165 ... P28482 26338362
    262030 4qp4:A (2.2) BS01 36O 2.7.11.24 GO:0000165 ... P28482 26338362
    262031 4qp4:B (2.2) BS01 36O 2.7.11.24 GO:0000165 ... P28482 26338362
    262032 4qp5:A (1.26) BS01 ZN 3.4.24.75 N/A P10547 25039253
    262033 4qp5:B (1.26) BS01 ZN 3.4.24.75 N/A P10547 25039253
    262034 4qp6:A (3.1) BS01 36N 2.7.11.24 GO:0000165 ... P28482 26338362 BindingDB: Kd=343000nM
    262035 4qp6:A (3.1) BS02 IMD 2.7.11.24 GO:0000165 ... P28482 26338362
    262036 4qp6:B (3.1) BS01 36N 2.7.11.24 GO:0000165 ... P28482 26338362 BindingDB: Kd=343000nM
    262037 4qp7:A (2.249) BS01 363 2.7.11.24 GO:0000165 ... P28482 26338362 MOAD: ic50=5.9uM
    BindingDB: IC50=5900nM
    262038 4qp7:B (2.249) BS01 363 2.7.11.24 GO:0000165 ... P28482 26338362 MOAD: ic50=5.9uM
    BindingDB: IC50=5900nM
    262039 4qp8:A (2.446) BS01 362 2.7.11.24 GO:0000165 ... P28482 26338362 MOAD: ic50=0.28uM
    BindingDB: IC50=280nM
    262040 4qp8:B (2.446) BS01 362 2.7.11.24 GO:0000165 ... P28482 26338362 MOAD: ic50=0.28uM
    BindingDB: IC50=280nM
    262041 4qp9:A (2.001) BS01 35X 2.7.11.24 GO:0000165 ... P28482 26338362 MOAD: ic50=0.071uM
    BindingDB: IC50=71nM
    262042 4qpa:A (2.85) BS01 35W 2.7.11.24 GO:0000165 ... P28482 26338362 BindingDB: IC50=37nM
    262043 4qpa:B (2.85) BS01 35W 2.7.11.24 GO:0000165 ... P28482 26338362 BindingDB: IC50=37nM
    262044 4qpb:A (1.78) BS01 ZN 3.4.24.75 N/A P10547 25039253
    262045 4qpb:B (1.78) BS01 ZN 3.4.24.75 N/A P10547 25039253
    262046 4qpd:A (2.1) BS01 THG 1.5.1.6 GO:0003824 ... E3NZ06 25849409
    262047 4qpd:B (2.1) BS01 THG 1.5.1.6 GO:0003824 ... E3NZ06 25849409
    262048 4qpd:B (2.1) BS02 THG 1.5.1.6 GO:0003824 ... E3NZ06 25849409
    262049 4qpe:A (2.004) BS01 37E 3.4.11.2 GO:0004177 ... Q9JYV4 25192493
    262050 4qpe:A (2.004) BS02 ZN 3.4.11.2 GO:0004177 ... Q9JYV4 25192493
    262051 4qpf:A (1.59) BS01 39L 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    262052 4qpf:A (1.59) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    262053 4qpf:A (1.59) BS03 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    262054 4qpj:A (2.742) BS01 CA 2.7.99.- GO:0000160 ... Q2YQA5 26124143
    262055 4qpj:B (2.742) BS01 CA 2.7.99.- GO:0000160 ... Q2YQA5 26124143
    262056 4qpj:D (2.742) BS01 MG ? GO:0000160 ... Q2YQA4 26124143
    262057 4qpl:A (1.9) BS01 V3L 2.3.2.27 GO:0008270 ... Q9CZW6 25327252 MOAD: Kd=39nM
    262058 4qpl:A (1.9) BS02 ZN 2.3.2.27 GO:0008270 ... Q9CZW6 25327252
    262059 4qpl:A (1.9) BS03 ZN 2.3.2.27 GO:0008270 ... Q9CZW6 25327252
    262060 4qpl:C (1.9) BS01 V3L 2.3.2.27 GO:0008270 ... Q9CZW6 25327252 MOAD: Kd=39nM
    262061 4qpl:C (1.9) BS02 ZN 2.3.2.27 GO:0008270 ... Q9CZW6 25327252
    262062 4qpl:C (1.9) BS03 ZN 2.3.2.27 GO:0008270 ... Q9CZW6 25327252
    262063 4qpm:A (2.202) BS01 ADP 2.7.11.1 GO:0004672 ... O43683 25308863
    262064 4qpm:A (2.202) BS02 MG 2.7.11.1 GO:0004672 ... O43683 25308863
    262065 4qpm:B (2.202) BS01 ADP 2.7.11.1 GO:0004672 ... O43683 25308863
    262066 4qpm:B (2.202) BS02 MG 2.7.11.1 GO:0004672 ... O43683 25308863
    262067 4qpn:A (1.25) BS01 SAH 2.1.1.- GO:0005515 ... Q96AZ1 N/A
    262068 4qpp:A (2.52) BS01 SAH 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262069 4qpp:A (2.52) BS02 36S 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262070 4qpp:B (2.52) BS01 peptide 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262071 4qpp:B (2.52) BS02 SAH 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262072 4qpp:B (2.52) BS03 36S 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262073 4qpp:C (2.52) BS01 peptide 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262074 4qpp:C (2.52) BS02 SAH 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262075 4qpp:C (2.52) BS03 36S 2.1.1.319 GO:0003682 ... Q96LA8 N/A
    262076 4qpq:A (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262077 4qpq:A (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262078 4qpq:B (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262079 4qpq:B (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262080 4qpq:C (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262081 4qpq:C (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262082 4qpq:D (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262083 4qpq:D (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262084 4qpq:E (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262085 4qpq:E (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262086 4qpq:F (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262087 4qpq:F (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262088 4qpq:G (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262089 4qpq:G (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262090 4qpq:H (3.106) BS01 dna ? GO:0003677 ... P10026 25284757
    262091 4qpq:H (3.106) BS02 dna ? GO:0003677 ... P10026 25284757
    262092 4qps:A (1.8) BS01 37Q 2.7.10.2 GO:0004672 ... P52333 25552479
    262093 4qps:C (1.8) BS01 37Q 2.7.10.2 GO:0004672 ... P52333 25552479
    262094 4qpw:A (1.14) BS01 XYP ? N/A B3CET4 25136124
    262095 4qpw:A (1.14) BS02 XYP ? N/A B3CET4 25136124
    262096 4qpx:A (1.86) BS01 rna 3.4.22.66 GO:0003723 ... Q70ET3 25478829
    262097 4qpx:A (1.86) BS02 rna 3.4.22.66 GO:0003723 ... Q70ET3 25478829
    262098 4qpx:A (1.86) BS03 MN 3.4.22.66 GO:0003723 ... Q70ET3 25478829
    262099 4qpx:A (1.86) BS04 MN 3.4.22.66 GO:0003723 ... Q70ET3 25478829
    262100 4qpx:A (1.86) BS05 MN 3.4.22.66 GO:0003723 ... Q70ET3 25478829
    262101 4qpz:A (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    262102 4qpz:A (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    262103 4qpz:A (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262104 4qpz:B (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    262105 4qpz:B (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    262106 4qpz:B (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262107 4qpz:C (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    262108 4qpz:C (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    262109 4qpz:C (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262110 4qpz:D (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    262111 4qpz:D (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    262112 4qpz:D (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262113 4qpz:E (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    262114 4qpz:E (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    262115 4qpz:E (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262116 4qpz:F (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    262117 4qpz:F (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    262118 4qpz:F (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262119 4qpz:G (3.0) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    262120 4qpz:G (3.0) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    262121 4qpz:G (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262122 4qpz:H (3.0) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    262123 4qpz:H (3.0) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    262124 4qpz:H (3.0) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262125 4qq3:A (1.72) BS01 XMP 1.1.1.205 GO:0003824 ... Q9KTW3 N/A
    262126 4qq4:A (1.75) BS01 peptide ? GO:0008270 ... Q14149 26933034
    262127 4qq4:A (1.75) BS02 ZN ? GO:0008270 ... Q14149 26933034
    262128 4qq4:B (1.75) BS01 peptide ? GO:0008270 ... Q14149 26933034
    262129 4qq4:B (1.75) BS02 ZN ? GO:0008270 ... Q14149 26933034
    262130 4qq5:A (2.203) BS01 37O 2.7.10.1 GO:0004672 ... P22455 25317566
    262131 4qq6:A (1.75) BS01 36X ? GO:0003723 ... Q16637 36114190
    262132 4qq7:A (2.2) BS01 GSH ? GO:0004364 ... B4E6Q3 N/A
    262133 4qq7:A (2.2) BS02 GLO ? GO:0004364 ... B4E6Q3 N/A
    262134 4qq7:B (2.2) BS01 GSH ? GO:0004364 ... B4E6Q3 N/A
    262135 4qq7:B (2.2) BS02 GLO ? GO:0004364 ... B4E6Q3 N/A
    262136 4qq8:A (2.88) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    262137 4qq8:A (2.88) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    262138 4qq8:A (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262139 4qq8:B (2.88) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    262140 4qq8:B (2.88) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    262141 4qq8:B (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262142 4qq8:C (2.88) BS01 MG ? GO:0000287 ... Q9F4L3 25775555
    262143 4qq8:C (2.88) BS02 TPP ? GO:0000287 ... Q9F4L3 25775555
    262144 4qq8:C (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262145 4qq8:D (2.88) BS01 TPP ? GO:0000287 ... Q9F4L3 25775555
    262146 4qq8:D (2.88) BS02 MG ? GO:0000287 ... Q9F4L3 25775555
    262147 4qq8:D (2.88) BS03 TPP ? GO:0000287 ... Q9F4L3 25775555
    262148 4qqb:A (2.8) BS01 rna ? GO:0003676 ... P19339 25209665
    262149 4qqb:B (2.8) BS01 rna ? GO:0003676 ... P19339 25209665
    262150 4qqb:X (2.8) BS01 rna ? GO:0003676 ... B7Z0E2 25209665
    262151 4qqb:Y (2.8) BS01 rna ? GO:0003676 ... B7Z0E2 25209665
    262152 4qqc:A (2.4) BS01 37O 2.7.10.1 GO:0004672 ... P22455 25349422
    262153 4qqd:A (2.28) BS01 36X 2.3.2.27 N/A Q96T88 36114190
    262154 4qqd:A (2.28) BS02 36X 2.3.2.27 N/A Q96T88 36114190
    262155 4qqd:B (2.28) BS01 36X 2.3.2.27 N/A Q96T88 36114190
    262156 4qqe:A (1.8) BS01 37F ? GO:0000122 ... P61964 N/A BindingDB: Kd=50nM
    262157 4qqf:F (2.672) BS01 MG ? N/A Q02776 26323300
    262158 4qqi:A (2.03) BS01 peptide ? N/A Q9H9E1 N/A
    262159 4qqk:A (1.88) BS01 37H 2.1.1.319 GO:0003682 ... Q96LA8 27480107
    262160 4qql:A (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262161 4qql:A (2.39) BS02 MG ? N/A Q9ESN4 25752542
    262162 4qql:B (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262163 4qql:C (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262164 4qql:D (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262165 4qql:D (2.39) BS02 MG ? N/A Q9ESN4 25752542
    262166 4qql:E (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262167 4qql:F (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262168 4qql:F (2.39) BS02 MG ? N/A Q9ESN4 25752542
    262169 4qql:G (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262170 4qql:H (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262171 4qql:I (2.39) BS01 MG ? N/A Q9ESN4 25752542
    262172 4qql:I (2.39) BS02 MG ? N/A Q9ESN4 25752542
    262173 4qqn:A (2.08) BS01 3BQ 2.1.1.319 GO:0016274 ... O60678 29244490 BindingDB: IC50=291nM
    262174 4qqq:A (2.5) BS01 MAN ? GO:0005576 ... Q2XU26 N/A
    262175 4qqq:A (2.5) BS02 MAN ? GO:0005576 ... Q2XU26 N/A
    262176 4qqr:A (2.7) BS01 ZN 1.1.1.133
    5.1.3.13
    GO:0003824 ... Q9LQ04 N/A
    262177 4qqr:A (2.7) BS02 ZN 1.1.1.133
    5.1.3.13
    GO:0003824 ... Q9LQ04 N/A
    262178 4qqr:B (2.7) BS01 ZN 1.1.1.133
    5.1.3.13
    GO:0003824 ... Q9LQ04 N/A
    262179 4qqr:B (2.7) BS02 ZN 1.1.1.133
    5.1.3.13
    GO:0003824 ... Q9LQ04 N/A
    262180 4qqu:A (2.98) BS01 ZN 2.1.1.14 GO:0003871 ... P82610 25545590
    262181 4qqu:A (2.98) BS02 39S 2.1.1.14 GO:0003871 ... P82610 25545590
    262182 4qqw:A (2.664) BS01 dna ? GO:0003723 ... Q47PJ0 25132177
    262183 4qqw:A (2.664) BS02 FE ? GO:0003723 ... Q47PJ0 25132177
    262184 4qqw:A (2.664) BS03 FE ? GO:0003723 ... Q47PJ0 25132177
    262185 4qqw:C (2.664) BS01 dna ? GO:0003723 ... Q47PJ0 25132177
    262186 4qqw:C (2.664) BS02 FE ? GO:0003723 ... Q47PJ0 25132177
    262187 4qqw:C (2.664) BS03 FE ? GO:0003723 ... Q47PJ0 25132177
    262188 4qqw:E (2.664) BS01 dna ? GO:0003723 ... Q47PJ0 25132177
    262189 4qqw:E (2.664) BS02 FE ? GO:0003723 ... Q47PJ0 25132177
    262190 4qqw:E (2.664) BS03 FE ? GO:0003723 ... Q47PJ0 25132177
    262191 4qqw:G (2.664) BS01 dna ? GO:0003723 ... Q47PJ0 25132177
    262192 4qqw:G (2.664) BS02 FE ? GO:0003723 ... Q47PJ0 25132177
    262193 4qqw:G (2.664) BS03 FE ? GO:0003723 ... Q47PJ0 25132177
    262194 4qqx:A (3.34) BS01 dna ? GO:0003723 ... Q47PJ0 25132177
    262195 4qqx:A (3.34) BS02 FE ? GO:0003723 ... Q47PJ0 25132177
    262196 4qqx:A (3.34) BS03 FE ? GO:0003723 ... Q47PJ0 25132177
    262197 4qqx:A (3.34) BS04 ATP ? GO:0003723 ... Q47PJ0 25132177
    262198 4qqx:C (3.34) BS01 dna ? GO:0003723 ... Q47PJ0 25132177
    262199 4qqx:C (3.34) BS02 FE ? GO:0003723 ... Q47PJ0 25132177
    262200 4qqx:C (3.34) BS03 FE ? GO:0003723 ... Q47PJ0 25132177

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).