SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    264801 4rbs:B (2.405) BS01 0RV 3.5.2.6 GO:0008270 ... C7C422 N/A
    264802 4rbs:B (2.405) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    264803 4rbs:B (2.405) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    264804 4rbs:B (2.405) BS04 0RV 3.5.2.6 GO:0008270 ... C7C422 N/A
    264805 4rc2:A (2.096) BS01 3O8 2.7.11.1 GO:0004672 ... P11309 N/A
    264806 4rc3:A (2.338) BS01 3OA 2.7.11.1 GO:0004672 ... P11309 N/A
    264807 4rc4:A (2.651) BS01 3OK 2.7.11.1 GO:0004672 ... P11309 N/A
    264808 4rc5:A (2.3) BS01 PL3 4.1.99.5 GO:0046914 ... Q54764 25482408
    264809 4rc5:A (2.3) BS02 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264810 4rc5:A (2.3) BS03 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264811 4rc5:B (2.3) BS01 PL3 4.1.99.5 GO:0046914 ... Q54764 25482408
    264812 4rc6:A (2.9) BS01 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264813 4rc6:A (2.9) BS02 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264814 4rc6:B (2.9) BS01 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264815 4rc6:B (2.9) BS02 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264816 4rc7:A (2.2) BS01 PL3 4.1.99.5 GO:0046914 ... Q54764 25482408
    264817 4rc7:A (2.2) BS02 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264818 4rc7:A (2.2) BS03 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264819 4rc7:B (2.2) BS01 PL3 4.1.99.5 GO:0046914 ... Q54764 25482408
    264820 4rc7:B (2.2) BS02 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264821 4rc7:B (2.2) BS03 FE2 4.1.99.5 GO:0046914 ... Q54764 25482408
    264822 4rc8:A (1.71) BS01 FE 4.1.99.5 GO:0046914 ... Q54764 25482408
    264823 4rc8:A (1.71) BS02 FE 4.1.99.5 GO:0046914 ... Q54764 25482408
    264824 4rcd:A (1.9) BS01 3LL 3.4.23.46 GO:0004190 ... P56817 25363711 MOAD: ic50=0.7nM
    BindingDB: IC50=0.700000nM
    264825 4rce:A (2.4) BS01 3LN 3.4.23.46 GO:0004190 ... P56817 25389560 MOAD: ic50=2nM
    BindingDB: IC50=25nM
    264826 4rcf:A (1.78) BS01 3LO 3.4.23.46 GO:0004190 ... P56817 25389560 MOAD: ic50=4nM
    BindingDB: IC50=4.1nM
    264827 4rcg:A (2.6) BS01 GDP 4.1.1.32 GO:0004611 ... P9WIH3 25798914
    264828 4rch:A (2.3) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 25203462
    264829 4rch:A (2.3) BS02 3LZ 2.7.1.1 GO:0001678 ... P35557 25203462
    264830 4rcj:A (1.6) BS01 rna ? GO:0003723 ... Q9BYJ9 26318451
    264831 4rck:A (2.999) BS01 MG ? N/A Q5DZP5 N/A
    264832 4rck:B (2.999) BS01 MG ? N/A Q5DZP5 N/A
    264833 4rcm:A (1.8) BS01 rna ? GO:0003723 ... Q06390 26318451
    264834 4rcm:B (1.8) BS01 rna ? GO:0003723 ... Q06390 26318451
    264835 4rco:A (1.9) BS01 GAL ? GO:0005576 ... Q2G1S8 N/A
    264836 4rco:A (1.9) BS02 SIA ? GO:0005576 ... Q2G1S8 N/A
    264837 4rco:A (1.9) BS03 FUC ? GO:0005576 ... Q2G1S8 N/A
    264838 4rco:B (1.9) BS01 GAL ? GO:0005576 ... Q2G1S8 N/A
    264839 4rco:B (1.9) BS02 SIA ? GO:0005576 ... Q2G1S8 N/A
    264840 4rco:B (1.9) BS03 FUC ? GO:0005576 ... Q2G1S8 N/A
    264841 4rcp:A (1.6) BS01 peptide 2.7.11.21 N/A P53350 25347203
    264842 4rcr:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 3186702
    264843 4rcr:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 3186702
    264844 4rcr:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 3186702
    264845 4rcr:L (2.8) BS04 U10 ? GO:0009772 ... P0C0Y8 3186702
    264846 4rcr:L (2.8) BS05 FE ? GO:0009772 ... P0C0Y8 3186702
    264847 4rcr:L (2.8) BS06 BCL ? GO:0009772 ... P0C0Y8 3186702
    264848 4rcr:L (2.8) BS07 BPH ? GO:0009772 ... P0C0Y8 3186702
    264849 4rcr:L (2.8) BS08 U10 ? GO:0009772 ... P0C0Y8 3186702
    264850 4rcr:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 3186702
    264851 4rcr:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 3186702
    264852 4rcr:M (2.8) BS03 BOG ? GO:0009772 ... P0C0Y9 3186702
    264853 4rcr:M (2.8) BS04 FE ? GO:0009772 ... P0C0Y9 3186702
    264854 4rcr:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 3186702
    264855 4rcr:M (2.8) BS06 BCL ? GO:0009772 ... P0C0Y9 3186702
    264856 4rcr:M (2.8) BS07 BPH ? GO:0009772 ... P0C0Y9 3186702
    264857 4rcr:M (2.8) BS08 U10 ? GO:0009772 ... P0C0Y9 3186702
    264858 4rcv:A (2.294) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    264859 4rcv:A (2.294) BS02 NDP 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    264860 4rcv:A (2.294) BS03 DE2 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    264861 4rcv:A (2.294) BS04 PO3 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    264862 4rcv:B (2.294) BS01 MN 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    264863 4rcv:B (2.294) BS02 NDP 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    264864 4rcv:B (2.294) BS03 PO3 1.1.1.267 GO:0000287 ... P9WNS1 25642788
    264865 4rcy:A (1.65) BS01 GTP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264866 4rcy:A (1.65) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264867 4rcy:A (1.65) BS03 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264868 4rcz:A (1.429) BS01 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264869 4rcz:A (1.429) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264870 4rcz:A (1.429) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264871 4rd0:A (1.713) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 MOAD: Kd=0.24uM
    264872 4rd0:A (1.713) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264873 4rd0:A (1.713) BS03 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 MOAD: Kd=0.24uM
    264874 4rd1:A (1.5) BS01 GTP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264875 4rd1:A (1.5) BS02 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264876 4rd1:A (1.5) BS03 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264877 4rd1:A (1.5) BS04 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264878 4rd1:A (1.5) BS05 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264879 4rd2:A (1.585) BS01 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264880 4rd2:A (1.585) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264881 4rd2:A (1.585) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264882 4rd3:A (1.69) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264883 4rd3:A (1.69) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264884 4rd3:A (1.69) BS03 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264885 4rd4:A (1.3) BS01 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264886 4rd4:A (1.3) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264887 4rd4:A (1.3) BS03 GNP 3.6.5.3 GO:0000049 ... Q980A5 25690901
    264888 4rd5:A (2.7) BS01 dna 3.1.21.4 N/A Q5F9M9 25429979
    264889 4rd5:A (2.7) BS02 dna 3.1.21.4 N/A Q5F9M9 25429979
    264890 4rd5:B (2.7) BS01 dna 3.1.21.4 N/A Q5F9M9 25429979
    264891 4rd5:B (2.7) BS02 dna 3.1.21.4 N/A Q5F9M9 25429979
    264892 4rd6:A (1.944) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 25690901 MOAD: Kd=0.52uM
    264893 4rda:A (2.497) BS01 SGN ? GO:0016020 ... P51693 25760599
    264894 4rda:A (2.497) BS02 IDS ? GO:0016020 ... P51693 25760599
    264895 4rda:A (2.497) BS03 SGN ? GO:0016020 ... P51693 25760599
    264896 4rda:A (2.497) BS04 UAP ? GO:0016020 ... P51693 25760599
    264897 4rda:B (2.497) BS01 SGN ? GO:0016020 ... P51693 25760599
    264898 4rda:B (2.497) BS02 SGN ? GO:0016020 ... P51693 25760599
    264899 4rda:B (2.497) BS03 SGN ? GO:0016020 ... P51693 25760599
    264900 4rdc:A (1.198) BS01 PRO ? N/A Q3MFZ5 N/A
    264901 4rdc:A (1.198) BS02 MG ? N/A Q3MFZ5 N/A
    264902 4rdd:A (1.601) BS01 3LU 3.1.3.48 GO:0004725 ... Q06124 26191366 MOAD: ic50=16.8uM
    264903 4rdh:A (2.1) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    264904 4rdh:B (2.1) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    264905 4rdh:C (2.1) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    264906 4rdh:D (2.1) BS01 AMP 6.1.-.- GO:0005515 ... Q46927 26101842
    264907 4rdi:A (1.95) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 26101842
    264908 4rdi:B (1.95) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 26101842
    264909 4rdi:C (1.95) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 26101842
    264910 4rdi:D (1.95) BS01 ATP 6.1.-.- GO:0005515 ... Q46927 26101842
    264911 4rdk:A (1.629) BS01 GAL ? N/A Q8BCA3 25547362
    264912 4rdk:A (1.629) BS02 FUC ? N/A Q8BCA3 25547362
    264913 4rdk:A (1.629) BS03 FUC ? N/A Q8BCA3 25547362
    264914 4rdk:A (1.629) BS04 FUC ? N/A Q8BCA3 25547362
    264915 4rdk:B (1.629) BS01 GAL ? N/A Q8BCA3 25547362
    264916 4rdk:B (1.629) BS02 FUC ? N/A Q8BCA3 25547362
    264917 4rdk:B (1.629) BS03 FUC ? N/A Q8BCA3 25547362
    264918 4rdl:A (1.449) BS01 GAL ? N/A Q8BCA3 25547362
    264919 4rdl:A (1.449) BS02 FUC ? N/A Q8BCA3 25547362
    264920 4rdl:A (1.449) BS03 FUC ? N/A Q8BCA3 25547362
    264921 4rdl:B (1.449) BS01 FUC ? N/A Q8BCA3 25547362
    264922 4rdl:B (1.449) BS02 GAL ? N/A Q8BCA3 25547362
    264923 4rdl:B (1.449) BS03 FUC ? N/A Q8BCA3 25547362
    264924 4rdm:A (2.7) BS01 dna 3.1.21.4 N/A Q5F9M9 25429979
    264925 4rdm:A (2.7) BS02 dna 3.1.21.4 N/A Q5F9M9 25429979
    264926 4rdm:B (2.7) BS01 dna 3.1.21.4 N/A Q5F9M9 25429979
    264927 4rdm:B (2.7) BS02 dna 3.1.21.4 N/A Q5F9M9 25429979
    264928 4rdn:A (2.1) BS01 6MD ? GO:0003723 ... Q9Y5A9 25412658
    264929 4rdn:B (2.1) BS01 6MD ? GO:0003723 ... Q9Y5A9 25412658
    264930 4rdq:A (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    264931 4rdq:A (2.85) BS02 CL N/A GO:0005254 ... N/A 25337878
    264932 4rdq:A (2.85) BS03 CA N/A GO:0005254 ... N/A 25337878
    264933 4rdq:A (2.85) BS04 C6N N/A GO:0005254 ... N/A 25337878
    264934 4rdq:A (2.85) BS05 CL N/A GO:0005254 ... N/A 25337878
    264935 4rdq:B (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    264936 4rdq:B (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    264937 4rdq:B (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    264938 4rdq:B (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    264939 4rdq:B (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    264940 4rdq:C (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    264941 4rdq:C (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    264942 4rdq:C (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    264943 4rdq:C (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    264944 4rdq:C (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    264945 4rdq:D (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    264946 4rdq:D (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    264947 4rdq:D (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    264948 4rdq:D (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    264949 4rdq:D (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    264950 4rdq:E (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    264951 4rdq:E (2.85) BS02 CA N/A GO:0005254 ... N/A 25337878
    264952 4rdq:E (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    264953 4rdq:E (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    264954 4rdq:E (2.85) BS05 C6N N/A GO:0005254 ... N/A 25337878
    264955 4rdr:A (2.472) BS01 ZN ? GO:0009279 ... Q9JZN9 26282243
    264956 4rdr:A (2.472) BS02 C8E ? GO:0009279 ... Q9JZN9 26282243
    264957 4rdr:A (2.472) BS03 C8E ? GO:0009279 ... Q9JZN9 26282243
    264958 4rdr:A (2.472) BS04 C8E ? GO:0009279 ... Q9JZN9 26282243
    264959 4rdt:A (3.2) BS01 ZN ? GO:0009279 ... Q9JZN9 26282243
    264960 4rdt:A (3.2) BS02 C8E ? GO:0009279 ... Q9JZN9 26282243
    264961 4rdt:A (3.2) BS03 C8E ? GO:0009279 ... Q9JZN9 26282243
    264962 4rdt:B (3.2) BS01 ZN ? GO:0009279 ... Q9JZN9 26282243
    264963 4rdu:A (1.85) BS01 dna ? GO:0000981 ... P56178 N/A
    264964 4rdu:A (1.85) BS02 dna ? GO:0000981 ... P56178 N/A
    264965 4rdu:D (1.85) BS01 dna ? GO:0000981 ... P56178 N/A
    264966 4rdu:D (1.85) BS02 dna ? GO:0000981 ... P56178 N/A
    264967 4rdu:D (1.85) BS03 dna ? GO:0000981 ... P56178 N/A
    264968 4rdv:A (2.08) BS01 NFQ 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264969 4rdv:A (2.08) BS02 ZN 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264970 4rdv:B (2.08) BS01 NFQ 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264971 4rdv:B (2.08) BS02 ZN 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264972 4rdv:C (2.08) BS01 NFQ 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264973 4rdv:C (2.08) BS02 ZN 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264974 4rdv:D (2.08) BS01 NFQ 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264975 4rdv:D (2.08) BS02 ZN 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264976 4rdw:A (1.591) BS01 ZN 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264977 4rdw:A (1.591) BS02 NGQ 3.5.3.13 GO:0005829 ... Q9HU77 N/A
    264978 4rdx:A (2.55) BS01 rna 6.1.1.21 GO:0004821 ... P62374 25722375
    264979 4rdx:A (2.55) BS02 AMP 6.1.1.21 GO:0004821 ... P62374 25722375
    264980 4rdx:A (2.55) BS03 HIS 6.1.1.21 GO:0004821 ... P62374 25722375
    264981 4rdy:A (2.0) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    264982 4rdy:A (2.0) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    264983 4rdy:A (2.0) BS03 3M5 ? GO:0008270 ... F0QXN6 25670483
    264984 4rdy:B (2.0) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    264985 4rdy:B (2.0) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    264986 4rdy:B (2.0) BS03 3M5 ? GO:0008270 ... F0QXN6 25670483
    264987 4rdz:A (1.8) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    264988 4rdz:A (1.8) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    264989 4rdz:B (1.8) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    264990 4rdz:B (1.8) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    264991 4re0:A (2.35) BS01 CO ? GO:0008270 ... F0QXN6 25670483
    264992 4re0:A (2.35) BS02 CO ? GO:0008270 ... F0QXN6 25670483
    264993 4re2:A (2.0) BS01 MVL 3.2.1.25 GO:0004553 ... A2YPH1 N/A
    264994 4re3:A (2.55) BS01 GIM 3.2.1.25 GO:0004553 ... A2YPH1 N/A
    264995 4re4:A (2.29) BS01 IFM 3.2.1.25 GO:0004553 ... A2YPH1 N/A
    264996 4re5:A (1.9) BS01 Y3A 3.4.19.1 GO:0004252 ... Q9YBQ2 25760596
    264997 4re5:B (1.9) BS01 Y3A 3.4.19.1 GO:0004252 ... Q9YBQ2 25760596
    264998 4re6:A (2.55) BS01 Y3A 3.4.19.1 GO:0004252 ... Q9YBQ2 25760596
    264999 4re6:C (2.55) BS01 Y3A 3.4.19.1 GO:0004252 ... Q9YBQ2 25760596
    265000 4re8:A (2.16) BS01 3MJ ? GO:0003677 ... P22736 26235054

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).