SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    265401 4rj0:D (1.95) BS01 PMP 4.1.1.15 GO:0005737 ... D1C7D8 N/A
    265402 4rj3:A (1.63) BS01 3QS 2.7.11.22 GO:0000082 ... P24941 25383627 MOAD: ic50=93nM
    BindingDB: IC50=93nM
    265403 4rj4:A (2.78) BS01 3QW 2.7.10.1 GO:0004672 ... P00533 25383627
    265404 4rj5:A (3.1) BS01 3QY 2.7.10.1 GO:0004672 ... P00533 25383627
    265405 4rj6:A (2.7) BS01 3R0 2.7.10.1 GO:0004672 ... P00533 25383627
    265406 4rj7:A (2.55) BS01 3R1 2.7.10.1 GO:0004672 ... P00533 25383627 BindingDB: Ki=101nM
    265407 4rj8:A (2.5) BS01 3QS 2.7.10.1 GO:0004672 ... P00533 25383627 MOAD: Ki=17nM
    BindingDB: Ki=553nM
    265408 4rjd:A (2.0) BS01 CA ? GO:0005509 ... P0DP29 25694384
    265409 4rjd:A (2.0) BS02 CA ? GO:0005509 ... P0DP29 25694384
    265410 4rjd:A (2.0) BS03 TFP ? GO:0005509 ... P0DP29 25694384
    265411 4rjd:A (2.0) BS04 TFP ? GO:0005509 ... P0DP29 25694384
    265412 4rjd:B (2.0) BS01 CA ? GO:0005509 ... P0DP29 25694384
    265413 4rjd:B (2.0) BS02 CA ? GO:0005509 ... P0DP29 25694384
    265414 4rjd:B (2.0) BS03 TFP ? GO:0005509 ... P0DP29 25694384
    265415 4rjd:B (2.0) BS04 TFP ? GO:0005509 ... P0DP29 25694384
    265416 4rje:A (1.65) BS01 FNR 1.1.3.- GO:0010181 ... Q44467 25423902
    265417 4rje:A (1.65) BS02 PYR 1.1.3.- GO:0010181 ... Q44467 25423902
    265418 4rje:B (1.65) BS01 FNR 1.1.3.- GO:0010181 ... Q44467 25423902
    265419 4rje:B (1.65) BS02 PYR 1.1.3.- GO:0010181 ... Q44467 25423902
    265420 4rje:C (1.65) BS01 FNR 1.1.3.- GO:0010181 ... Q44467 25423902
    265421 4rje:C (1.65) BS02 PYR 1.1.3.- GO:0010181 ... Q44467 25423902
    265422 4rje:D (1.65) BS01 FNR 1.1.3.- GO:0010181 ... Q44467 25423902
    265423 4rje:D (1.65) BS02 PYR 1.1.3.- GO:0010181 ... Q44467 25423902
    265424 4rjf:A (2.0072) BS01 peptide ? GO:0000307 ... P12004 25972089
    265425 4rjf:C (2.0072) BS01 peptide ? GO:0000307 ... P12004 25972089
    265426 4rjf:C (2.0072) BS02 peptide ? GO:0000307 ... P12004 25972089
    265427 4rjf:E (2.0072) BS01 peptide ? GO:0000307 ... P12004 25972089
    265428 4rji:A (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265429 4rji:A (3.2) BS02 MG N/A GO:0000287 ... N/A 25393087
    265430 4rji:A (3.2) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265431 4rji:B (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265432 4rji:B (3.2) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265433 4rji:B (3.2) BS03 MG N/A GO:0000287 ... N/A 25393087
    265434 4rji:C (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265435 4rji:C (3.2) BS02 MG N/A GO:0000287 ... N/A 25393087
    265436 4rji:C (3.2) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265437 4rji:D (3.2) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265438 4rji:D (3.2) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265439 4rji:D (3.2) BS03 MG N/A GO:0000287 ... N/A 25393087
    265440 4rjj:A (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265441 4rjj:A (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    265442 4rjj:A (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265443 4rjj:B (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265444 4rjj:B (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265445 4rjj:B (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    265446 4rjj:C (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265447 4rjj:C (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    265448 4rjj:C (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265449 4rjj:D (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265450 4rjj:D (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265451 4rjj:D (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    265452 4rjj:E (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265453 4rjj:E (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    265454 4rjj:E (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265455 4rjj:F (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265456 4rjj:F (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265457 4rjj:F (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    265458 4rjj:G (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265459 4rjj:G (2.34) BS02 MG N/A GO:0000287 ... N/A 25393087
    265460 4rjj:G (2.34) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265461 4rjj:H (2.34) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265462 4rjj:H (2.34) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265463 4rjj:H (2.34) BS03 MG N/A GO:0000287 ... N/A 25393087
    265464 4rjk:A (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265465 4rjk:A (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    265466 4rjk:A (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265467 4rjk:B (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265468 4rjk:B (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265469 4rjk:B (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    265470 4rjk:C (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265471 4rjk:C (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    265472 4rjk:C (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265473 4rjk:D (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265474 4rjk:D (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265475 4rjk:D (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    265476 4rjk:E (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265477 4rjk:E (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    265478 4rjk:E (2.5) BS03 TPP N/A GO:0000287 ... N/A 25393087
    265479 4rjk:F (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265480 4rjk:F (2.5) BS02 TPP N/A GO:0000287 ... N/A 25393087
    265481 4rjk:F (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    265482 4rjk:F (2.5) BS04 PYR N/A GO:0000287 ... N/A 25393087
    265483 4rjk:G (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265484 4rjk:G (2.5) BS02 MG N/A GO:0000287 ... N/A 25393087
    265485 4rjk:G (2.5) BS03 TDL N/A GO:0000287 ... N/A 25393087
    265486 4rjk:H (2.5) BS01 TPP N/A GO:0000287 ... N/A 25393087
    265487 4rjk:H (2.5) BS02 TDL N/A GO:0000287 ... N/A 25393087
    265488 4rjk:H (2.5) BS03 MG N/A GO:0000287 ... N/A 25393087
    265489 4rjk:H (2.5) BS04 PYR N/A GO:0000287 ... N/A 25393087
    265490 4rjl:A (1.6401) BS01 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    265491 4rjl:A (1.6401) BS02 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    265492 4rjw:A (1.52) BS01 C8E ? GO:0009279 ... P32977 26445443
    265493 4rjw:A (1.52) BS02 C8E ? GO:0009279 ... P32977 26445443
    265494 4rjx:A (1.54) BS01 C8E ? GO:0009279 ... P32977 26445443
    265495 4rjx:A (1.54) BS02 PO4 ? GO:0009279 ... P32977 26445443
    265496 4rjy:A (2.1) BS01 SER N/A GO:0006520 ... N/A 25560296
    265497 4rjy:C (2.1) BS01 SER N/A GO:0006520 ... N/A 25560296
    265498 4rjy:D (2.1) BS01 SER N/A GO:0006520 ... N/A 25560296
    265499 4rk0:A (1.8) BS01 RIB ? N/A Q82ZT5 N/A
    265500 4rk0:B (1.8) BS01 RIB ? N/A Q82ZT5 N/A
    265501 4rk0:C (1.8) BS01 RIB ? N/A Q82ZT5 N/A
    265502 4rk0:D (1.8) BS01 RIB ? N/A Q82ZT5 N/A
    265503 4rk1:A (1.9) BS01 RIB ? N/A I3TZ89 N/A
    265504 4rk1:B (1.9) BS01 RIB ? N/A I3TZ89 N/A
    265505 4rk1:C (1.9) BS01 RIB ? N/A I3TZ89 N/A
    265506 4rk1:D (1.9) BS01 RIB ? N/A I3TZ89 N/A
    265507 4rk1:E (1.9) BS01 RIB ? N/A I3TZ89 N/A
    265508 4rk1:F (1.9) BS01 RIB ? N/A I3TZ89 N/A
    265509 4rk4:A (1.32) BS01 GLC ? N/A Q036L9 N/A
    265510 4rk5:A (1.35) BS01 GLC ? N/A Q036L9 N/A
    265511 4rk5:A (1.35) BS02 FRU ? N/A Q036L9 N/A
    265512 4rk6:A (1.76) BS01 GLC ? N/A C5RBT0 N/A
    265513 4rk6:B (1.76) BS01 GLC ? N/A C5RBT0 N/A
    265514 4rk7:A (1.8) BS01 GLC ? N/A C5RBT0 N/A
    265515 4rk7:A (1.8) BS02 FRU ? N/A C5RBT0 N/A
    265516 4rk7:B (1.8) BS01 GLC ? N/A C5RBT0 N/A
    265517 4rk7:B (1.8) BS02 FRU ? N/A C5RBT0 N/A
    265518 4rk8:A (2.22) BS01 FMN 1.3.5.2 GO:0004152 ... Q02127 N/A
    265519 4rk8:A (2.22) BS02 3RV 1.3.5.2 GO:0004152 ... Q02127 N/A
    265520 4rk9:A (2.15) BS01 GLC ? GO:0055085 ... Q65LL6 N/A
    265521 4rk9:A (2.15) BS02 GLA ? GO:0055085 ... Q65LL6 N/A
    265522 4rk9:A (2.15) BS03 GLA ? GO:0055085 ... Q65LL6 N/A
    265523 4rk9:A (2.15) BS04 FRU ? GO:0055085 ... Q65LL6 N/A
    265524 4rk9:B (2.15) BS01 GLC ? GO:0055085 ... Q65LL6 N/A
    265525 4rk9:B (2.15) BS02 GLA ? GO:0055085 ... Q65LL6 N/A
    265526 4rk9:B (2.15) BS03 GLA ? GO:0055085 ... Q65LL6 N/A
    265527 4rk9:B (2.15) BS04 FRU ? GO:0055085 ... Q65LL6 N/A
    265528 4rka:A (2.71) BS01 FMN 1.3.5.2 GO:0004152 ... Q02127 N/A
    265529 4rka:A (2.71) BS02 3RY 1.3.5.2 GO:0004152 ... Q02127 N/A
    265530 4rkb:A (1.88) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    265531 4rkb:A (1.88) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    265532 4rkc:A (2.19) BS01 PMP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265533 4rkc:B (2.19) BS01 PMP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265534 4rkd:A (2.76) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265535 4rkd:A (2.76) BS02 KET 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265536 4rkd:B (2.76) BS01 KET 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265537 4rkd:B (2.76) BS02 PLP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265538 4rkd:C (2.76) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265539 4rkd:C (2.76) BS02 OAA 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265540 4rkd:D (2.76) BS01 PMP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265541 4rkd:E (2.76) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265542 4rkd:E (2.76) BS02 OAA 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265543 4rkd:E (2.76) BS03 KET 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265544 4rkd:F (2.76) BS01 PLP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265545 4rkd:G (2.76) BS01 KET 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265546 4rkd:H (2.76) BS01 PMP 2.6.1.- GO:0003824 ... C7E5X4 25760611
    265547 4rke:A (2.0006) BS01 GNP 3.6.5.2 GO:0003924 ... O18333 25615965
    265548 4rke:A (2.0006) BS02 MG 3.6.5.2 GO:0003924 ... O18333 25615965
    265549 4rkf:A (1.5) BS01 GNP ? GO:0003924 ... P25228 25615965
    265550 4rkf:A (1.5) BS02 MG ? GO:0003924 ... P25228 25615965
    265551 4rkf:B (1.5) BS01 GNP ? GO:0003924 ... P25228 25615965
    265552 4rkf:B (1.5) BS02 MG ? GO:0003924 ... P25228 25615965
    265553 4rkg:A (2.5) BS01 dna 2.3.2.27 GO:0061630 ... P50534 25452275
    265554 4rkg:A (2.5) BS02 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265555 4rkg:A (2.5) BS03 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265556 4rkg:A (2.5) BS04 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265557 4rkg:B (2.5) BS01 dna 2.3.2.27 GO:0061630 ... P50534 25452275
    265558 4rkg:B (2.5) BS02 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265559 4rkg:B (2.5) BS03 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265560 4rkg:B (2.5) BS04 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265561 4rkh:C (2.0) BS01 dna 2.3.2.27 GO:0061630 ... P50534 25452275
    265562 4rkh:C (2.0) BS02 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265563 4rkh:C (2.0) BS03 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265564 4rkh:C (2.0) BS04 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265565 4rkh:D (2.0) BS01 dna 2.3.2.27 GO:0061630 ... P50534 25452275
    265566 4rkh:D (2.0) BS02 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265567 4rkh:D (2.0) BS03 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265568 4rkh:D (2.0) BS04 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265569 4rkh:E (2.0) BS01 dna 2.3.2.27 GO:0061630 ... P50534 25452275
    265570 4rkh:E (2.0) BS02 dna 2.3.2.27 GO:0061630 ... P50534 25452275
    265571 4rkh:E (2.0) BS03 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265572 4rkh:E (2.0) BS04 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265573 4rkh:E (2.0) BS05 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265574 4rkh:F (2.0) BS01 dna 2.3.2.27 GO:0061630 ... P50534 25452275
    265575 4rkh:F (2.0) BS02 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265576 4rkh:F (2.0) BS03 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265577 4rkh:F (2.0) BS04 ZN 2.3.2.27 GO:0061630 ... P50534 25452275
    265578 4rkk:A (2.4) BS01 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265579 4rkk:A (2.4) BS02 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265580 4rkk:A (2.4) BS03 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265581 4rkk:A (2.4) BS04 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265582 4rkk:A (2.4) BS05 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265583 4rkk:A (2.4) BS06 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265584 4rkk:C (2.4) BS01 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265585 4rkk:C (2.4) BS02 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265586 4rkk:C (2.4) BS03 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265587 4rkk:C (2.4) BS04 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265588 4rkk:C (2.4) BS05 GLC 3.1.3.-
    3.1.3.16
    3.1.3.48
    GO:0004373 ... O95278 25544560
    265589 4rkl:A (1.66) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    265590 4rkl:A (1.66) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    265591 4rkm:A (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265592 4rkm:A (2.2) BS02 BU3 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265593 4rkm:A (2.2) BS03 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265594 4rkm:A (2.2) BS04 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265595 4rkm:A (2.2) BS05 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265596 4rkm:A (2.2) BS06 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265597 4rkm:A (2.2) BS07 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265598 4rkm:A (2.2) BS08 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265599 4rkm:A (2.2) BS09 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    265600 4rkm:A (2.2) BS10 HEM 1.8.99.- GO:0016002 ... Q7MSJ8 25642962

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).