SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    267401 4s0r:J (3.5) BS03 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267402 4s0r:J (3.5) BS04 GLN 6.3.1.2 GO:0000287 ... P12425 25691471
    267403 4s0r:J (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267404 4s0r:J (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267405 4s0r:K (3.5) BS01 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267406 4s0r:K (3.5) BS02 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267407 4s0r:K (3.5) BS03 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267408 4s0r:K (3.5) BS04 GLN 6.3.1.2 GO:0000287 ... P12425 25691471
    267409 4s0r:K (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267410 4s0r:K (3.5) BS06 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267411 4s0r:L (3.5) BS01 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267412 4s0r:L (3.5) BS02 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267413 4s0r:L (3.5) BS03 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267414 4s0r:L (3.5) BS04 GLN 6.3.1.2 GO:0000287 ... P12425 25691471
    267415 4s0r:L (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267416 4s0r:M (3.5) BS01 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267417 4s0r:M (3.5) BS02 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267418 4s0r:M (3.5) BS03 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267419 4s0r:M (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267420 4s0r:M (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267421 4s0r:M (3.5) BS06 GLN 6.3.1.2 GO:0000287 ... P12425 25691471
    267422 4s0r:N (3.5) BS01 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267423 4s0r:N (3.5) BS02 peptide 6.3.1.2 GO:0000287 ... P12425 25691471
    267424 4s0r:N (3.5) BS03 GLN 6.3.1.2 GO:0000287 ... P12425 25691471
    267425 4s0r:N (3.5) BS04 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267426 4s0r:N (3.5) BS05 MG 6.3.1.2 GO:0000287 ... P12425 25691471
    267427 4s0t:A (3.14) BS01 40U ? GO:0003677 ... O75469 25579995
    267428 4s0t:B (3.14) BS01 40U ? GO:0003677 ... O75469 25579995
    267429 4s0v:A (2.5) BS01 SUV ? GO:0004930 ... O43614
    Q9V2J8
    25533960
    267430 4s0x:B (2.1) BS01 XXH 3.1.1.3 GO:0004806 ... O59952 N/A
    267431 4s10:C (2.614) BS01 CA ? GO:0051015 ... P06396 25601851
    267432 4s10:D (2.614) BS01 CA ? GO:0051015 ... P06396 25601851
    267433 4s13:A (2.348) BS01 4VP 4.1.1.102 GO:0005737 ... Q03034 25862228
    267434 4s13:C (2.348) BS01 4VP 4.1.1.102 GO:0005737 ... Q03034 25862228
    267435 4s13:F (2.348) BS01 4VP 4.1.1.102 GO:0005737 ... Q03034 25862228
    267436 4s13:G (2.348) BS01 4VP 4.1.1.102 GO:0005737 ... Q03034 25862228
    267437 4s14:A (3.542) BS01 peptide ? GO:0003677 ... P51449 25651181
    267438 4s14:A (3.542) BS02 4D8 ? GO:0003677 ... P51449 25651181
    267439 4s15:A (1.897) BS01 peptide ? GO:0003677 ... P35398 25651181
    267440 4s15:A (1.897) BS02 peptide ? GO:0003677 ... P35398 25651181
    267441 4s15:A (1.897) BS03 4D8 ? GO:0003677 ... P35398 25651181
    267442 4s15:B (1.897) BS01 peptide ? GO:0003677 ... P35398 25651181
    267443 4s15:B (1.897) BS02 4D8 ? GO:0003677 ... P35398 25651181
    267444 4s17:A (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    267445 4s17:B (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    267446 4s17:C (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    267447 4s17:D (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    267448 4s17:E (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    267449 4s17:F (2.3) BS01 MG 6.3.1.2 GO:0003824 ... A1A1Z1 N/A
    267450 4s18:A (2.27) BS01 1PT 4.6.1.18 GO:0003676 ... P61823 26239545
    267451 4s18:B (2.27) BS01 1PT 4.6.1.18 GO:0003676 ... P61823 26239545
    267452 4s18:B (2.27) BS02 1PT 4.6.1.18 GO:0003676 ... P61823 26239545
    267453 4s1b:A (2.099) BS01 FE ? N/A Q8Y746 25583510
    267454 4s1b:A (2.099) BS02 FE ? N/A Q8Y746 25583510
    267455 4s1b:A (2.099) BS03 2BA ? N/A Q8Y746 25583510 MOAD: Kd=0.3uM
    267456 4s1b:A (2.099) BS04 2BA ? N/A Q8Y746 25583510 MOAD: Kd=0.3uM
    267457 4s1b:D (2.099) BS01 FE ? N/A Q8Y746 25583510
    267458 4s1b:D (2.099) BS02 FE ? N/A Q8Y746 25583510
    267459 4s1b:D (2.099) BS03 2BA ? N/A Q8Y746 25583510 MOAD: Kd=0.3uM
    267460 4s1c:A (2.398) BS01 FE ? N/A Q8Y746 25583510
    267461 4s1c:A (2.398) BS02 FE ? N/A Q8Y746 25583510
    267462 4s1c:D (2.398) BS01 FE ? N/A Q8Y746 25583510
    267463 4s1c:D (2.398) BS02 FE ? N/A Q8Y746 25583510
    267464 4s1d:C (2.5) BS01 41M N/A N/A N/A 25670234
    267465 4s1d:D (2.5) BS01 41M N/A N/A N/A 25670234
    267466 4s1d:E (2.5) BS01 41M N/A N/A N/A 25670234
    267467 4s1d:F (2.5) BS01 41M N/A N/A N/A 25670234
    267468 4s1d:H (2.5) BS01 41M N/A N/A N/A 25670234
    267469 4s1d:L (2.5) BS01 41M N/A N/A N/A 25670234
    267470 4s1d:O (2.5) BS01 41M N/A N/A N/A 25670234
    267471 4s1d:P (2.5) BS01 41M N/A N/A N/A 25670234
    267472 4s1f:B (2.242) BS01 P2D 4.1.2.- GO:0005737 ... P78055 N/A
    267473 4s1f:G (2.242) BS01 P2D 4.1.2.- GO:0005737 ... P78055 N/A
    267474 4s1f:H (2.242) BS01 P2D 4.1.2.- GO:0005737 ... P78055 N/A
    267475 4s1f:K (2.242) BS01 P2D 4.1.2.- GO:0005737 ... P78055 N/A
    267476 4s1f:P (2.242) BS01 P2D 4.1.2.- GO:0005737 ... P78055 N/A
    267477 4s1g:A (2.1) BS01 43T 3.4.23.15 GO:0004190 ... P00797 25728416 MOAD: Ki=0.6nM
    267478 4s1g:B (2.1) BS01 43T 3.4.23.15 GO:0004190 ... P00797 25728416 MOAD: Ki=0.6nM
    267479 4s1h:A (1.6) BS01 ADP 2.7.1.35 GO:0005829 ... C4LVZ4 33045383
    267480 4s1h:A (1.6) BS02 MG 2.7.1.35 GO:0005829 ... C4LVZ4 33045383
    267481 4s1h:B (1.6) BS01 MG 2.7.1.35 GO:0005829 ... C4LVZ4 33045383
    267482 4s1h:B (1.6) BS02 ADP 2.7.1.35 GO:0005829 ... C4LVZ4 33045383
    267483 4s1i:A (1.6) BS01 PLP 2.7.1.35 GO:0005829 ... C4LVZ4 33045383
    267484 4s1i:B (1.6) BS01 PLP 2.7.1.35 GO:0005829 ... C4LVZ4 33045383
    267485 4s1k:A (2.2) BS01 ATP ? GO:0000166 ... Q5EK29 25751308
    267486 4s1l:A (1.752) BS01 ATP ? GO:0000166 ... Q5EK29 25751308
    267487 4s1o:A (1.84) BS01 NAP 2.7.7.18 GO:0000309 ... P9WJJ5 N/A
    267488 4s1o:B (1.84) BS01 NAP 2.7.7.18 GO:0000309 ... P9WJJ5 N/A
    267489 4s1x:A (1.9) BS01 peptide ? N/A A8TXX2 25753192
    267490 4s1x:B (1.9) BS01 peptide ? N/A A8TXX2 25753192
    267491 4s1x:D (1.9) BS01 peptide ? N/A A8TXX2 25753192
    267492 4s1x:E (1.9) BS01 peptide ? N/A A8TXX2 25753192
    267493 4s1z:A (3.03) BS01 peptide ? N/A P62987 25752573
    267494 4s1z:A (3.03) BS02 peptide ? N/A P62987 25752573
    267495 4s1z:B (3.03) BS01 peptide ? N/A P62987 25752573
    267496 4s1z:C (3.03) BS01 peptide ? N/A P62987 25752573
    267497 4s1z:C (3.03) BS02 peptide ? N/A P62987 25752573
    267498 4s1z:D (3.03) BS01 peptide ? N/A P62987 25752573
    267499 4s1z:D (3.03) BS02 peptide ? N/A P62987 25752573
    267500 4s1z:E (3.03) BS01 peptide ? N/A P62987 25752573
    267501 4s1z:E (3.03) BS02 peptide ? N/A P62987 25752573
    267502 4s20:C (4.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 25646438
    267503 4s20:C (4.7) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 25646438
    267504 4s20:D (4.7) BS01 dna N/A GO:0003677 ... N/A 25646438
    267505 4s20:D (4.7) BS02 rna N/A GO:0003677 ... N/A 25646438
    267506 4s20:D (4.7) BS03 ZN N/A GO:0003677 ... N/A 25646438
    267507 4s20:D (4.7) BS04 MG N/A GO:0003677 ... N/A 25646438
    267508 4s20:H (4.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 25646438
    267509 4s20:H (4.7) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 25646438
    267510 4s20:I (4.7) BS01 dna N/A GO:0003677 ... N/A 25646438
    267511 4s20:I (4.7) BS02 rna N/A GO:0003677 ... N/A 25646438
    267512 4s20:I (4.7) BS03 ZN N/A GO:0003677 ... N/A 25646438
    267513 4s20:I (4.7) BS04 ZN N/A GO:0003677 ... N/A 25646438
    267514 4s20:I (4.7) BS05 MG N/A GO:0003677 ... N/A 25646438
    267515 4s21:A (3.25) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G3 26095026
    267516 4s21:B (3.25) BS01 BLA 2.7.13.3 GO:0006355 ... Q6N5G3 26095026
    267517 4s23:A (1.65) BS01 SF4 1.17.7.3 GO:0005506 ... Q5SLI8 25660452
    267518 4s23:A (1.65) BS02 H6P 1.17.7.3 GO:0005506 ... Q5SLI8 25660452
    267519 4s23:B (1.65) BS01 SF4 1.17.7.3 GO:0005506 ... Q5SLI8 25660452
    267520 4s23:B (1.65) BS02 H6P 1.17.7.3 GO:0005506 ... Q5SLI8 25660452
    267521 4s25:A (1.45) BS01 SF4 4.1.99.17 GO:0009228 ... O82392 25813242
    267522 4s25:A (1.45) BS02 IRN 4.1.99.17 GO:0009228 ... O82392 25813242
    267523 4s25:A (1.45) BS03 SAH 4.1.99.17 GO:0009228 ... O82392 25813242
    267524 4s25:A (1.45) BS04 ZN 4.1.99.17 GO:0009228 ... O82392 25813242
    267525 4s26:A (1.85) BS01 SF4 4.1.99.17 GO:0009228 ... O82392 25813242
    267526 4s26:A (1.85) BS02 IRN 4.1.99.17 GO:0009228 ... O82392 25813242
    267527 4s26:A (1.85) BS03 SAH 4.1.99.17 GO:0009228 ... O82392 25813242
    267528 4s26:A (1.85) BS04 ZN 4.1.99.17 GO:0009228 ... O82392 25813242
    267529 4s26:B (1.85) BS01 SF4 4.1.99.17 GO:0009228 ... O82392 25813242
    267530 4s26:B (1.85) BS02 IRN 4.1.99.17 GO:0009228 ... O82392 25813242
    267531 4s26:B (1.85) BS03 SAH 4.1.99.17 GO:0009228 ... O82392 25813242
    267532 4s26:B (1.85) BS04 ZN 4.1.99.17 GO:0009228 ... O82392 25813242
    267533 4s27:A (1.27) BS01 SF4 4.1.99.17 GO:0009228 ... O82392 25813242
    267534 4s27:A (1.27) BS02 AIR 4.1.99.17 GO:0009228 ... O82392 25813242
    267535 4s27:A (1.27) BS03 MET 4.1.99.17 GO:0009228 ... O82392 25813242
    267536 4s27:A (1.27) BS04 FE2 4.1.99.17 GO:0009228 ... O82392 25813242
    267537 4s28:A (1.25) BS01 SF4 4.1.99.17 GO:0009228 ... O82392 25813242
    267538 4s28:A (1.25) BS02 AIR 4.1.99.17 GO:0009228 ... O82392 25813242
    267539 4s28:A (1.25) BS03 SAH 4.1.99.17 GO:0009228 ... O82392 25813242
    267540 4s28:A (1.25) BS04 FE2 4.1.99.17 GO:0009228 ... O82392 25813242
    267541 4s29:A (1.382) BS01 IRN 4.1.99.17 GO:0009228 ... O82392 25813242
    267542 4s29:A (1.382) BS02 FE2 4.1.99.17 GO:0009228 ... O82392 25813242
    267543 4s2a:A (2.93) BS01 SF4 4.1.99.17 GO:0005829 ... Q9A6Q5 25813242
    267544 4s2b:A (1.46) BS01 44S 2.2.1.2 GO:0004801 ... P0A870 27050126
    267545 4s2b:B (1.46) BS01 44S 2.2.1.2 GO:0004801 ... P0A870 27050126
    267546 4s2c:A (2.2) BS01 F6R 2.2.1.2 GO:0004801 ... P0A870 27050126
    267547 4s2c:B (2.2) BS01 F6R 2.2.1.2 GO:0004801 ... P0A870 27050126
    267548 4s2e:A (2.35) BS01 PO4 2.7.4.9 GO:0004798 ... O67099 28627020
    267549 4s2e:B (2.35) BS01 PO4 2.7.4.9 GO:0004798 ... O67099 28627020
    267550 4s2i:A (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... G3G192 27622530
    267551 4s2i:B (1.6) BS01 NXL 3.5.2.6 GO:0008800 ... G3G192 27622530
    267552 4s2j:A (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267553 4s2j:B (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267554 4s2j:C (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267555 4s2j:D (2.54) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267556 4s2k:A (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267557 4s2k:B (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267558 4s2k:C (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267559 4s2k:D (2.1) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267560 4s2n:A (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267561 4s2n:B (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267562 4s2n:C (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267563 4s2n:D (2.0) BS01 NXL 3.5.2.6 GO:0008658 ... Q6XEC0 27622530
    267564 4s2o:A (1.7) BS01 NXL 3.5.2.6 GO:0005886 ... P14489 27622530
    267565 4s2o:A (1.7) BS02 CO 3.5.2.6 GO:0005886 ... P14489 27622530
    267566 4s2o:B (1.7) BS01 CO 3.5.2.6 GO:0005886 ... P14489 27622530
    267567 4s2o:B (1.7) BS02 NXL 3.5.2.6 GO:0005886 ... P14489 27622530
    267568 4s2q:D (2.7) BS01 dna ? N/A Q04887 N/A
    267569 4s2q:D (2.7) BS02 dna ? N/A Q04887 N/A
    267570 4s2r:P (1.949) BS01 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267571 4s2r:P (1.949) BS02 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267572 4s2r:Q (1.949) BS01 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267573 4s2r:Q (1.949) BS02 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267574 4s2t:P (2.15) BS01 peptide 3.4.11.9 GO:0004177 ... O44750 25905034
    267575 4s2t:P (2.15) BS02 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267576 4s2t:P (2.15) BS03 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267577 4s2t:Q (2.15) BS01 peptide 3.4.11.9 GO:0004177 ... O44750 25905034
    267578 4s2t:Q (2.15) BS02 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267579 4s2t:Q (2.15) BS03 ZN 3.4.11.9 GO:0004177 ... O44750 25905034
    267580 4s2u:A (2.71) BS01 MG 2.7.6.1 GO:0000287 ... P0A717 N/A
    267581 4s2v:A (1.7) BS01 CA 3.6.1.- GO:0016787 ... P0A776 25657011
    267582 4s2x:A (1.5) BS01 rna 3.6.1.- GO:0000287 ... P0A776 25657011
    267583 4s2x:A (1.5) BS02 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    267584 4s2x:A (1.5) BS03 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    267585 4s2y:A (1.6) BS01 rna 3.6.1.- GO:0000287 ... P0A776 25657011
    267586 4s2y:A (1.6) BS02 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    267587 4s2y:A (1.6) BS03 MG 3.6.1.- GO:0000287 ... P0A776 25657011
    267588 4s32:A (1.34) BS01 ANP 2.7.11.24 GO:0000165 ... P63086 N/A
    267589 4s32:A (1.34) BS02 MG 2.7.11.24 GO:0000165 ... P63086 N/A
    267590 4s33:A (1.48) BS01 ANP 2.7.11.24 GO:0000165 ... P63086 N/A
    267591 4s33:A (1.48) BS02 MG 2.7.11.24 GO:0000165 ... P63086 N/A
    267592 4s34:A (2.5) BS01 ANP 2.7.11.24 GO:0000165 ... P63086 N/A
    267593 4s35:A (1.55) BS01 ACP 2.7.4.9 GO:0004798 ... O67099 28627020
    267594 4s35:A (1.55) BS02 TMP 2.7.4.9 GO:0004798 ... O67099 28627020
    267595 4s35:A (1.55) BS03 MG 2.7.4.9 GO:0004798 ... O67099 28627020
    267596 4s35:B (1.55) BS01 ACP 2.7.4.9 GO:0004798 ... O67099 28627020
    267597 4s35:B (1.55) BS02 TMP 2.7.4.9 GO:0004798 ... O67099 28627020
    267598 4s35:B (1.55) BS03 MG 2.7.4.9 GO:0004798 ... O67099 28627020
    267599 4s36:A (1.46) BS01 FE ? N/A Q9S581 N/A
    267600 4s38:A (1.4) BS01 SF4 1.17.7.3 GO:0005506 ... Q5SLI8 25868383

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).