SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    270001 4tub:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    270002 4tub:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    270003 4tub:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    270004 4tub:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    270005 4tub:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    270006 4tub:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    270007 4tub:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    270008 4tub:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    270009 4tub:XF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    270010 4tub:XG (3.6) BS01 rna ? GO:0000049 ... P17291 25352689
    270011 4tub:XH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    270012 4tub:XI (3.6) BS01 rna ? GO:0003723 ... P80374 25352689
    270013 4tub:XI (3.6) BS02 rna ? GO:0003723 ... P80374 25352689
    270014 4tub:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    270015 4tub:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    270016 4tub:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    270017 4tub:XL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    270018 4tub:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    270019 4tub:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    270020 4tub:XM (3.6) BS03 rna ? GO:0000049 ... P80377 25352689
    270021 4tub:XN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    270022 4tub:XN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    270023 4tub:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    270024 4tub:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    270025 4tub:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    270026 4tub:XQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    270027 4tub:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    270028 4tub:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    270029 4tub:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    270030 4tub:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    270031 4tub:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    270032 4tub:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    270033 4tub:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    270034 4tub:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    270035 4tub:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    270036 4tub:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    270037 4tub:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    270038 4tub:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    270039 4tub:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    270040 4tub:Y6 (3.6) BS01 rna ? GO:0003735 ... P35871 25352689
    270041 4tub:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    270042 4tub:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    270043 4tub:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    270044 4tub:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    270045 4tub:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    270046 4tub:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    270047 4tub:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    270048 4tub:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    270049 4tub:YH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    270050 4tub:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    270051 4tub:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    270052 4tub:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    270053 4tub:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    270054 4tub:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    270055 4tub:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    270056 4tub:YQ (3.6) BS01 rna ? GO:0003735 ... P60489 25352689
    270057 4tub:YQ (3.6) BS02 rna ? GO:0003735 ... P60489 25352689
    270058 4tub:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    270059 4tub:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    270060 4tub:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    270061 4tub:YT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    270062 4tub:YT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    270063 4tub:YU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    270064 4tub:YV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    270065 4tub:YW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    270066 4tub:YX (3.6) BS01 rna ? GO:0003735 ... Q5SHP0 25352689
    270067 4tub:YY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    270068 4tub:YZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    270069 4tub:YZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    270070 4tuc:QB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    270071 4tuc:QC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    270072 4tuc:QC (3.6) BS02 rna ? GO:0003676 ... P80372 25352689
    270073 4tuc:QD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    270074 4tuc:QD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    270075 4tuc:QE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    270076 4tuc:QF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    270077 4tuc:QF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    270078 4tuc:QG (3.6) BS01 rna ? GO:0000049 ... P17291 25352689
    270079 4tuc:QH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    270080 4tuc:QH (3.6) BS02 MG ? GO:0003735 ... P0DOY9 25352689
    270081 4tuc:QI (3.6) BS01 rna ? GO:0003723 ... P80374 25352689
    270082 4tuc:QI (3.6) BS02 rna ? GO:0003723 ... P80374 25352689
    270083 4tuc:QJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    270084 4tuc:QK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    270085 4tuc:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    270086 4tuc:QM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    270087 4tuc:QM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    270088 4tuc:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25352689
    270089 4tuc:QN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    270090 4tuc:QN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    270091 4tuc:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    270092 4tuc:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    270093 4tuc:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    270094 4tuc:QQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    270095 4tuc:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    270096 4tuc:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    270097 4tuc:QT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    270098 4tuc:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    270099 4tuc:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    270100 4tuc:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    270101 4tuc:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    270102 4tuc:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    270103 4tuc:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    270104 4tuc:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    270105 4tuc:R4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    270106 4tuc:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    270107 4tuc:R6 (3.6) BS01 rna ? GO:0003735 ... P35871 25352689
    270108 4tuc:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    270109 4tuc:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    270110 4tuc:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    270111 4tuc:RD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    270112 4tuc:RD (3.6) BS02 rna ? GO:0002181 ... P60405 25352689
    270113 4tuc:RD (3.6) BS03 MG ? GO:0002181 ... P60405 25352689
    270114 4tuc:RD (3.6) BS04 MG ? GO:0002181 ... P60405 25352689
    270115 4tuc:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    270116 4tuc:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    270117 4tuc:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    270118 4tuc:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    270119 4tuc:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    270120 4tuc:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    270121 4tuc:RH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    270122 4tuc:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    270123 4tuc:RN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    270124 4tuc:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    270125 4tuc:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    270126 4tuc:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    270127 4tuc:RP (3.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25352689
    270128 4tuc:RQ (3.6) BS01 rna ? GO:0003735 ... P60489 25352689
    270129 4tuc:RQ (3.6) BS02 rna ? GO:0003735 ... P60489 25352689
    270130 4tuc:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    270131 4tuc:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    270132 4tuc:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    270133 4tuc:RT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    270134 4tuc:RT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    270135 4tuc:RU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    270136 4tuc:RV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    270137 4tuc:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    270138 4tuc:RX (3.6) BS01 rna ? GO:0003735 ... Q5SHP0 25352689
    270139 4tuc:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    270140 4tuc:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    270141 4tuc:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    270142 4tuc:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    270143 4tuc:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    270144 4tuc:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    270145 4tuc:XD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    270146 4tuc:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    270147 4tuc:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    270148 4tuc:XF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    270149 4tuc:XG (3.6) BS01 rna ? GO:0000049 ... P17291 25352689
    270150 4tuc:XH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    270151 4tuc:XI (3.6) BS01 rna ? GO:0003723 ... P80374 25352689
    270152 4tuc:XI (3.6) BS02 rna ? GO:0003723 ... P80374 25352689
    270153 4tuc:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    270154 4tuc:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    270155 4tuc:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    270156 4tuc:XL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    270157 4tuc:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    270158 4tuc:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    270159 4tuc:XM (3.6) BS03 rna ? GO:0000049 ... P80377 25352689
    270160 4tuc:XN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    270161 4tuc:XN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    270162 4tuc:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    270163 4tuc:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    270164 4tuc:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    270165 4tuc:XQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    270166 4tuc:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    270167 4tuc:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    270168 4tuc:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    270169 4tuc:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    270170 4tuc:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    270171 4tuc:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    270172 4tuc:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    270173 4tuc:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    270174 4tuc:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    270175 4tuc:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    270176 4tuc:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    270177 4tuc:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    270178 4tuc:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    270179 4tuc:Y6 (3.6) BS01 rna ? GO:0003735 ... P35871 25352689
    270180 4tuc:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    270181 4tuc:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    270182 4tuc:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    270183 4tuc:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    270184 4tuc:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    270185 4tuc:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    270186 4tuc:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    270187 4tuc:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    270188 4tuc:YG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    270189 4tuc:YH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    270190 4tuc:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    270191 4tuc:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    270192 4tuc:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    270193 4tuc:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    270194 4tuc:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    270195 4tuc:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    270196 4tuc:YQ (3.6) BS01 rna ? GO:0003735 ... P60489 25352689
    270197 4tuc:YQ (3.6) BS02 rna ? GO:0003735 ... P60489 25352689
    270198 4tuc:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    270199 4tuc:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    270200 4tuc:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).