SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    270401 4tue:RQ (3.5) BS02 rna ? GO:0003735 ... P60489 25352689
    270402 4tue:RR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    270403 4tue:RS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    270404 4tue:RS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    270405 4tue:RT (3.5) BS01 rna ? GO:0003735 ... P60490 25352689
    270406 4tue:RT (3.5) BS02 rna ? GO:0003735 ... P60490 25352689
    270407 4tue:RU (3.5) BS01 rna ? GO:0000027 ... P60491 25352689
    270408 4tue:RV (3.5) BS01 rna ? GO:0003723 ... P60492 25352689
    270409 4tue:RW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    270410 4tue:RX (3.5) BS01 rna ? GO:0003735 ... Q5SHP0 25352689
    270411 4tue:RY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    270412 4tue:RZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    270413 4tue:RZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    270414 4tue:XB (3.5) BS01 rna ? GO:0003735 ... P80371 25352689
    270415 4tue:XC (3.5) BS01 rna ? GO:0003676 ... P80372 25352689
    270416 4tue:XD (3.5) BS01 rna ? GO:0003723 ... P80373 25352689
    270417 4tue:XD (3.5) BS02 ZN ? GO:0003723 ... P80373 25352689
    270418 4tue:XE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    270419 4tue:XF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    270420 4tue:XG (3.5) BS01 rna ? GO:0000049 ... P17291 25352689
    270421 4tue:XH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    270422 4tue:XI (3.5) BS01 rna ? GO:0003723 ... P80374 25352689
    270423 4tue:XI (3.5) BS02 rna ? GO:0003723 ... P80374 25352689
    270424 4tue:XJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    270425 4tue:XK (3.5) BS01 rna ? GO:0003735 ... P80376 25352689
    270426 4tue:XL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    270427 4tue:XL (3.5) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    270428 4tue:XM (3.5) BS01 rna ? GO:0000049 ... P80377 25352689
    270429 4tue:XM (3.5) BS02 rna ? GO:0000049 ... P80377 25352689
    270430 4tue:XN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    270431 4tue:XN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    270432 4tue:XO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    270433 4tue:XO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    270434 4tue:XP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    270435 4tue:XQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    270436 4tue:XR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    270437 4tue:XS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    270438 4tue:XT (3.5) BS01 rna ? GO:0003723 ... P80380 25352689
    270439 4tue:Y0 (3.5) BS01 rna ? GO:0003735 ... P60493 25352689
    270440 4tue:Y0 (3.5) BS02 rna ? GO:0003735 ... P60493 25352689
    270441 4tue:Y0 (3.5) BS03 rna ? GO:0003735 ... P60493 25352689
    270442 4tue:Y1 (3.5) BS01 rna ? GO:0003735 ... P60494 25352689
    270443 4tue:Y2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    270444 4tue:Y3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    270445 4tue:Y3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    270446 4tue:Y4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    270447 4tue:Y4 (3.5) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    270448 4tue:Y5 (3.5) BS01 rna ? GO:0003735 ... P80339 25352689
    270449 4tue:Y6 (3.5) BS01 rna ? GO:0003735 ... P35871 25352689
    270450 4tue:Y7 (3.5) BS01 rna ? GO:0003735 ... P80340 25352689
    270451 4tue:Y8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    270452 4tue:Y9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    270453 4tue:YD (3.5) BS01 rna ? GO:0002181 ... P60405 25352689
    270454 4tue:YD (3.5) BS02 MG ? GO:0002181 ... P60405 25352689
    270455 4tue:YE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    270456 4tue:YF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    270457 4tue:YG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    270458 4tue:YG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    270459 4tue:YH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    270460 4tue:YI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    270461 4tue:YI (3.5) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    270462 4tue:YN (3.5) BS01 rna ? GO:0003729 ... P60488 25352689
    270463 4tue:YO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    270464 4tue:YO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    270465 4tue:YP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    270466 4tue:YQ (3.5) BS01 rna ? GO:0003735 ... P60489 25352689
    270467 4tue:YQ (3.5) BS02 rna ? GO:0003735 ... P60489 25352689
    270468 4tue:YQ (3.5) BS03 MG ? GO:0003735 ... P60489 25352689
    270469 4tue:YR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    270470 4tue:YS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    270471 4tue:YS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    270472 4tue:YT (3.5) BS01 rna ? GO:0003735 ... P60490 25352689
    270473 4tue:YT (3.5) BS02 rna ? GO:0003735 ... P60490 25352689
    270474 4tue:YU (3.5) BS01 rna ? GO:0000027 ... P60491 25352689
    270475 4tue:YV (3.5) BS01 rna ? GO:0003723 ... P60492 25352689
    270476 4tue:YW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    270477 4tue:YX (3.5) BS01 rna ? GO:0003735 ... Q5SHP0 25352689
    270478 4tue:YY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    270479 4tue:YZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    270480 4tue:YZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    270481 4tuf:A (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270482 4tuf:A (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270483 4tuf:A (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270484 4tuf:A (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270485 4tuf:B (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270486 4tuf:B (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270487 4tuf:B (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270488 4tuf:B (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270489 4tuf:B (2.7) BS05 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270490 4tuf:B (2.7) BS06 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270491 4tuf:B (2.7) BS07 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270492 4tuf:B (2.7) BS08 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270493 4tuf:C (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270494 4tuf:C (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270495 4tuf:C (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270496 4tuf:C (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270497 4tuf:C (2.7) BS05 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270498 4tuf:C (2.7) BS06 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270499 4tuf:D (2.7) BS01 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270500 4tuf:D (2.7) BS02 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270501 4tuf:D (2.7) BS03 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270502 4tuf:D (2.7) BS04 2HP 3.2.1.4 GO:0000272 ... P19487 N/A
    270503 4tug:A (3.55) BS01 dna 3.1.-.- GO:0000403 ... Q58719 25107472
    270504 4tug:A (3.55) BS02 dna 3.1.-.- GO:0000403 ... Q58719 25107472
    270505 4tug:A (3.55) BS03 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270506 4tug:A (3.55) BS04 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270507 4tug:B (3.55) BS01 dna 3.1.-.- GO:0000403 ... Q58719 25107472
    270508 4tug:B (3.55) BS02 dna 3.1.-.- GO:0000403 ... Q58719 25107472
    270509 4tug:B (3.55) BS03 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270510 4tug:B (3.55) BS04 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270511 4tug:C (3.55) BS01 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270512 4tug:C (3.55) BS02 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270513 4tug:D (3.55) BS01 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270514 4tug:D (3.55) BS02 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270515 4tug:E (3.55) BS01 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270516 4tug:E (3.55) BS02 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270517 4tug:F (3.55) BS01 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270518 4tug:F (3.55) BS02 MG 3.1.-.- GO:0000403 ... Q58719 25107472
    270519 4tuh:A (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270520 4tuh:B (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270521 4tuh:C (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270522 4tuh:D (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270523 4tuh:E (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270524 4tuh:F (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270525 4tuh:G (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270526 4tuh:H (1.8) BS01 38H ? GO:0042981 ... Q07817 24944740 BindingDB: Ki=0.380000nM, EC50=60nM
    270527 4tui:A (3.59) BS01 dna 3.1.-.- GO:0000403 ... Q58719 25107472
    270528 4tui:B (3.59) BS01 dna 3.1.-.- GO:0000403 ... Q58719 25107472
    270529 4tui:B (3.59) BS02 dna 3.1.-.- GO:0000403 ... Q58719 25107472
    270530 4tuj:A (1.89) BS01 peptide N/A N/A N/A 26179345
    270531 4tuj:B (1.89) BS01 peptide N/A N/A N/A 26179345
    270532 4tuj:C (1.89) BS01 peptide N/A N/A N/A 26179345
    270533 4tuj:D (1.89) BS01 peptide N/A N/A N/A 26179345
    270534 4tuk:H (1.6) BS01 peptide N/A N/A N/A 26179345
    270535 4tuk:L (1.6) BS01 peptide N/A N/A N/A 26179345
    270536 4tul:H (1.4) BS01 peptide N/A N/A N/A 26179345
    270537 4tul:L (1.4) BS01 peptide N/A N/A N/A 26179345
    270538 4tun:A (1.925) BS01 MVH 3.2.1.17 GO:0003796 ... P00698 24969463
    270539 4tun:B (1.925) BS01 MVH 3.2.1.17 GO:0003796 ... P00698 24969463
    270540 4tuo:A (1.55) BS01 SIA N/A N/A N/A 26179345
    270541 4tuo:A (1.55) BS02 SIA N/A N/A N/A 26179345
    270542 4tuo:B (1.55) BS01 GAL N/A N/A N/A 26179345
    270543 4tuo:B (1.55) BS02 SIA N/A N/A N/A 26179345
    270544 4tuo:C (1.55) BS01 SIA N/A N/A N/A 26179345
    270545 4tuo:C (1.55) BS02 SIA N/A N/A N/A 26179345
    270546 4tuo:D (1.55) BS01 SIA N/A N/A N/A 26179345
    270547 4tup:A (1.8) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270548 4tup:A (1.8) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270549 4tup:A (1.8) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270550 4tuq:A (2.367) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270551 4tuq:A (2.367) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270552 4tuq:A (2.367) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270553 4tuq:A (2.367) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270554 4tuq:A (2.367) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270555 4tuq:A (2.367) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270556 4tur:A (2.169) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270557 4tur:A (2.169) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270558 4tur:A (2.169) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270559 4tur:A (2.169) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270560 4tur:A (2.169) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270561 4tur:A (2.169) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270562 4tus:A (2.42) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270563 4tus:A (2.42) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270564 4tus:A (2.42) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270565 4tus:A (2.42) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270566 4tus:A (2.42) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270567 4tus:A (2.42) BS06 0KX 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0003677 ... P06746 25237188
    270568 4tuv:A (2.501) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 N/A
    270569 4tuv:A (2.501) BS02 CPZ 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 N/A
    270570 4tuw:A (2.902) BS01 rna ? GO:0003723 ... Q9VAN6 25002523
    270571 4tuw:A (2.902) BS02 rna ? GO:0003723 ... Q9VAN6 25002523
    270572 4tuw:B (2.902) BS01 rna ? GO:0003723 ... Q9VAN6 25002523
    270573 4tux:A (3.08) BS01 rna ? GO:0003723 ... Q9VAN6 25002523
    270574 4tux:B (3.08) BS01 rna ? GO:0003723 ... Q9VAN6 25002523
    270575 4tuy:A (2.1) BS01 GTP 3.6.5.- GO:0000226 ... P81947 25114240
    270576 4tuy:A (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 25114240
    270577 4tuy:B (2.1) BS01 GDP ? GO:0000226 ... Q6B856 25114240
    270578 4tuy:C (2.1) BS01 GTP 3.6.5.- GO:0000226 ... P81947 25114240
    270579 4tuy:C (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 25114240
    270580 4tuy:D (2.1) BS01 GDP ? GO:0000226 ... Q6B856 25114240
    270581 4tuy:D (2.1) BS02 36L ? GO:0000226 ... Q6B856 25114240
    270582 4tuy:F (2.1) BS01 ACP N/A GO:0036211 ... N/A 25114240
    270583 4tuz:A (1.9) BS01 peptide ? N/A P03372 25500867
    270584 4tuz:A (1.9) BS02 36J ? N/A P03372 25500867
    270585 4tuz:B (1.9) BS01 peptide ? N/A P03372 25500867
    270586 4tuz:B (1.9) BS02 36J ? N/A P03372 25500867
    270587 4tv0:A (2.601) BS01 rna ? GO:0003723 ... Q9VAN6 25002523
    270588 4tv1:A (1.85) BS01 peptide ? N/A P03372 25500867
    270589 4tv1:A (1.85) BS02 36M ? N/A P03372 25500867
    270590 4tv1:B (1.85) BS01 peptide ? N/A P03372 25500867
    270591 4tv1:B (1.85) BS02 36M ? N/A P03372 25500867
    270592 4tv3:A (2.85) BS01 ML9 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0016301 ... P42336 25043846 BindingDB: IC50=8.3nM, Ki=0.57nM
    270593 4tv5:A (1.85) BS01 CA ? GO:0003824 ... A0A0H3K9Z0 25336653
    270594 4tv5:A (1.85) BS02 CA ? GO:0003824 ... A0A0H3K9Z0 25336653
    270595 4tv6:A (2.6) BS01 OAA ? GO:0003824 ... A0A0H3K9Z0 25336653
    270596 4tv8:A (2.103) BS01 GTP 3.6.5.- GO:0000226 ... P81947 25114240
    270597 4tv8:A (2.103) BS02 CA 3.6.5.- GO:0000226 ... P81947 25114240
    270598 4tv8:B (2.103) BS01 GDP ? GO:0000226 ... Q6B856 25114240
    270599 4tv8:C (2.103) BS01 GTP 3.6.5.- GO:0000226 ... P81947 25114240
    270600 4tv8:C (2.103) BS02 CA 3.6.5.- GO:0000226 ... P81947 25114240

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).