SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    271601 4u20:D3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    271602 4u20:D4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    271603 4u20:DC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    271604 4u20:DD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    271605 4u20:DE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    271606 4u20:DF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    271607 4u20:DF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    271608 4u20:DG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    271609 4u20:DH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    271610 4u20:DI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    271611 4u20:DJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    271612 4u20:DK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    271613 4u20:DL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    271614 4u20:DM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    271615 4u20:DM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    271616 4u20:DN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    271617 4u20:DO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    271618 4u20:DO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    271619 4u20:DP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    271620 4u20:DP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    271621 4u20:DQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    271622 4u20:DR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    271623 4u20:DS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    271624 4u20:DT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    271625 4u20:DU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    271626 4u20:DV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    271627 4u20:DV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    271628 4u20:DW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    271629 4u20:DW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    271630 4u20:DX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    271631 4u20:DY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    271632 4u20:DZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    271633 4u20:DZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    271634 4u21:A (1.3908) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    271635 4u21:A (1.3908) BS02 FWF ? GO:0015276 ... P19491 25109876
    271636 4u21:B (1.3908) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    271637 4u21:B (1.3908) BS02 FWF ? GO:0015276 ... P19491 25109876
    271638 4u22:A (1.4409) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    271639 4u22:A (1.4409) BS02 FWF ? GO:0015276 ... P19491 25109876
    271640 4u23:A (1.6734) BS01 FWD ? GO:0015276 ... P19491 25109876 BindingDB: Ki=4nM, EC50=460nM
    271641 4u23:A (1.6734) BS02 FWF ? GO:0015276 ... P19491 25109876
    271642 4u24:AB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    271643 4u24:AC (2.9) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    271644 4u24:AD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    271645 4u24:AE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    271646 4u24:AF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    271647 4u24:AG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    271648 4u24:AH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    271649 4u24:AI (2.9) BS01 rna ? GO:0002181 ... P0A7X3 24957822
    271650 4u24:AJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    271651 4u24:AK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    271652 4u24:AK (2.9) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    271653 4u24:AL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    271654 4u24:AM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    271655 4u24:AN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    271656 4u24:AO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    271657 4u24:AO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    271658 4u24:AP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    271659 4u24:AQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    271660 4u24:AR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    271661 4u24:AS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    271662 4u24:AT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    271663 4u24:AU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    271664 4u24:B0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    271665 4u24:B1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    271666 4u24:B2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    271667 4u24:B3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    271668 4u24:B4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    271669 4u24:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    271670 4u24:B5 (2.9) BS01 rna ? GO:0003723 ... Q5SLP7 24957822
    271671 4u24:BC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    271672 4u24:BC (2.9) BS02 MG ? GO:0000027 ... P60422 24957822
    271673 4u24:BD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    271674 4u24:BE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    271675 4u24:BF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    271676 4u24:BF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    271677 4u24:BG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    271678 4u24:BH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    271679 4u24:BH (2.9) BS02 rna ? GO:0002181 ... P0A7R1 24957822
    271680 4u24:BI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    271681 4u24:BJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    271682 4u24:BK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    271683 4u24:BK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    271684 4u24:BL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    271685 4u24:BM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    271686 4u24:BM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    271687 4u24:BN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    271688 4u24:BO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    271689 4u24:BO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    271690 4u24:BP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    271691 4u24:BP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    271692 4u24:BQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    271693 4u24:BR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    271694 4u24:BS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    271695 4u24:BT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    271696 4u24:BU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    271697 4u24:BV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    271698 4u24:BV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    271699 4u24:BW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    271700 4u24:BW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    271701 4u24:BX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    271702 4u24:BY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    271703 4u24:BZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    271704 4u24:BZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    271705 4u24:CB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    271706 4u24:CB (2.9) BS02 rna ? GO:0000028 ... P0A7V0 24957822
    271707 4u24:CC (2.9) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    271708 4u24:CD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    271709 4u24:CE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    271710 4u24:CF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    271711 4u24:CG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    271712 4u24:CH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    271713 4u24:CI (2.9) BS01 rna ? GO:0002181 ... P0A7X3 24957822
    271714 4u24:CJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    271715 4u24:CK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    271716 4u24:CL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    271717 4u24:CM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    271718 4u24:CN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    271719 4u24:CO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    271720 4u24:CO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    271721 4u24:CP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    271722 4u24:CQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    271723 4u24:CR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    271724 4u24:CS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    271725 4u24:CT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    271726 4u24:CU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    271727 4u24:D0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    271728 4u24:D1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    271729 4u24:D2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    271730 4u24:D3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    271731 4u24:D4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    271732 4u24:D4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    271733 4u24:DC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    271734 4u24:DD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    271735 4u24:DE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    271736 4u24:DF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    271737 4u24:DF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    271738 4u24:DG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    271739 4u24:DH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822
    271740 4u24:DI (2.9) BS01 rna ? GO:0000027 ... P0A7J7 24957822
    271741 4u24:DJ (2.9) BS01 rna ? GO:0002181 ... P0AA10 24957822
    271742 4u24:DK (2.9) BS01 rna ? GO:0002181 ... P0ADY3 24957822
    271743 4u24:DK (2.9) BS02 rna ? GO:0002181 ... P0ADY3 24957822
    271744 4u24:DL (2.9) BS01 rna ? GO:0002181 ... P02413 24957822
    271745 4u24:DM (2.9) BS01 rna ? GO:0000027 ... P0ADY7 24957822
    271746 4u24:DM (2.9) BS02 rna ? GO:0000027 ... P0ADY7 24957822
    271747 4u24:DN (2.9) BS01 rna ? GO:0000027 ... P0AG44 24957822
    271748 4u24:DO (2.9) BS01 rna ? GO:0002181 ... P0C018 24957822
    271749 4u24:DO (2.9) BS02 rna ? GO:0002181 ... P0C018 24957822
    271750 4u24:DP (2.9) BS01 rna ? GO:0000027 ... P0A7K6 24957822
    271751 4u24:DP (2.9) BS02 rna ? GO:0000027 ... P0A7K6 24957822
    271752 4u24:DQ (2.9) BS01 rna ? GO:0000027 ... P0A7L3 24957822
    271753 4u24:DR (2.9) BS01 rna ? GO:0002181 ... P0AG48 24957822
    271754 4u24:DS (2.9) BS01 rna ? GO:0002181 ... P61175 24957822
    271755 4u24:DT (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 24957822
    271756 4u24:DU (2.9) BS01 rna ? GO:0000027 ... P60624 24957822
    271757 4u24:DV (2.9) BS01 rna ? GO:0000027 ... P68919 24957822
    271758 4u24:DV (2.9) BS02 rna ? GO:0000027 ... P68919 24957822
    271759 4u24:DW (2.9) BS01 rna ? GO:0003735 ... P0A7L8 24957822
    271760 4u24:DW (2.9) BS02 rna ? GO:0003735 ... P0A7L8 24957822
    271761 4u24:DX (2.9) BS01 rna ? GO:0000027 ... P0A7M2 24957822
    271762 4u24:DY (2.9) BS01 rna ? GO:0000027 ... P0A7M6 24957822
    271763 4u24:DZ (2.9) BS01 rna ? GO:0000027 ... P0AG51 24957822
    271764 4u24:DZ (2.9) BS02 rna ? GO:0000027 ... P0AG51 24957822
    271765 4u25:AB (2.9) BS01 rna ? GO:0000028 ... P0A7V0 24957822
    271766 4u25:AC (2.9) BS01 rna ? GO:0003676 ... P0A7V3 24957822
    271767 4u25:AD (2.9) BS01 rna ? GO:0000028 ... P0A7V8 24957822
    271768 4u25:AE (2.9) BS01 rna ? GO:0000028 ... P0A7W1 24957822
    271769 4u25:AF (2.9) BS01 rna ? GO:0003735 ... P02358 24957822
    271770 4u25:AG (2.9) BS01 rna ? GO:0003723 ... P02359 24957822
    271771 4u25:AH (2.9) BS01 rna ? GO:0000028 ... P0A7W7 24957822
    271772 4u25:AI (2.9) BS01 rna ? GO:0002181 ... P0A7X3 24957822
    271773 4u25:AJ (2.9) BS01 rna ? GO:0000049 ... P0A7R5 24957822
    271774 4u25:AK (2.9) BS01 rna ? GO:0002181 ... P0A7R9 24957822
    271775 4u25:AK (2.9) BS02 rna ? GO:0002181 ... P0A7R9 24957822
    271776 4u25:AL (2.9) BS01 rna ? GO:0000049 ... P0A7S3 24957822
    271777 4u25:AM (2.9) BS01 rna ? GO:0000049 ... P0A7S9 24957822
    271778 4u25:AN (2.9) BS01 rna ? GO:0000028 ... P0AG59 24957822
    271779 4u25:AO (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 24957822
    271780 4u25:AO (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 24957822
    271781 4u25:AP (2.9) BS01 rna ? GO:0000028 ... P0A7T3 24957822
    271782 4u25:AQ (2.9) BS01 rna ? GO:0000028 ... P0AG63 24957822
    271783 4u25:AR (2.9) BS01 rna ? GO:0003735 ... P0A7T7 24957822
    271784 4u25:AS (2.9) BS01 rna ? GO:0003723 ... P0A7U3 24957822
    271785 4u25:AT (2.9) BS01 rna ? GO:0000028 ... P0A7U7 24957822
    271786 4u25:AU (2.9) BS01 rna ? GO:0003735 ... P68679 24957822
    271787 4u25:B0 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 24957822
    271788 4u25:B1 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 24957822
    271789 4u25:B2 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 24957822
    271790 4u25:B3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 24957822
    271791 4u25:B4 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 24957822
    271792 4u25:B4 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 24957822
    271793 4u25:B5 (2.9) BS01 rna ? GO:0003723 ... Q5SLP7 24957822
    271794 4u25:BC (2.9) BS01 rna ? GO:0000027 ... P60422 24957822
    271795 4u25:BD (2.9) BS01 rna ? GO:0000027 ... P60438 24957822
    271796 4u25:BE (2.9) BS01 rna ? GO:0001070 ... P60723 24957822
    271797 4u25:BF (2.9) BS01 rna ? GO:0000027 ... P62399 24957822
    271798 4u25:BF (2.9) BS02 rna ? GO:0000027 ... P62399 24957822
    271799 4u25:BG (2.9) BS01 rna ? GO:0000027 ... P0AG55 24957822
    271800 4u25:BH (2.9) BS01 rna ? GO:0002181 ... P0A7R1 24957822

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).