SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27001 1k7i:A (1.59) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27002 1k7i:A (1.59) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27003 1k7i:A (1.59) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27004 1k7i:A (1.59) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27005 1k7i:A (1.59) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27006 1k7i:A (1.59) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27007 1k7i:A (1.59) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    27008 1k7i:A (1.59) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27009 1k7l:A (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    27010 1k7l:A (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    27011 1k7l:C (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    27012 1k7l:C (2.5) BS02 peptide ? GO:0003677 ... Q07869 11698662
    27013 1k7l:C (2.5) BS03 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    27014 1k7l:E (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    27015 1k7l:E (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    27016 1k7l:G (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    27017 1k7l:G (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    27018 1k7q:A (1.8) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27019 1k7q:A (1.8) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27020 1k7q:A (1.8) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27021 1k7q:A (1.8) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27022 1k7q:A (1.8) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27023 1k7q:A (1.8) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27024 1k7q:A (1.8) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    27025 1k7q:A (1.8) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    27026 1k7s:N (2.6) BS01 ALB ? GO:0005515 ... P07822 11805094
    27027 1k7w:A (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27028 1k7w:A (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27029 1k7w:B (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27030 1k7w:B (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27031 1k7w:C (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27032 1k7w:C (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27033 1k7w:D (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27034 1k7w:D (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    27035 1k7x:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    27036 1k7y:A (3.0) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    27037 1k81:A (-1.00) BS01 ZN ? GO:0003743 ... Q57562 11980477
    27038 1k82:A (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27039 1k82:A (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27040 1k82:A (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27041 1k82:A (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27042 1k82:B (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27043 1k82:B (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27044 1k82:B (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27045 1k82:B (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27046 1k82:C (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27047 1k82:C (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27048 1k82:C (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27049 1k82:C (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27050 1k82:D (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27051 1k82:D (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27052 1k82:D (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27053 1k82:D (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    27054 1k83:A (2.8) BS01 peptide 2.7.7.6 GO:0001172 ... P04050 11805306
    27055 1k83:A (2.8) BS02 ZN 2.7.7.6 GO:0001172 ... P04050 11805306
    27056 1k83:A (2.8) BS03 ZN 2.7.7.6 GO:0001172 ... P04050 11805306
    27057 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0001172 ... P04050 11805306
    27058 1k83:B (2.8) BS01 peptide 2.7.7.6 GO:0001172 ... P08518 11805306
    27059 1k83:B (2.8) BS02 ZN 2.7.7.6 GO:0001172 ... P08518 11805306
    27060 1k83:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11805306
    27061 1k83:I (2.8) BS01 ZN 2.7.7.6 GO:0001172 ... P27999 11805306
    27062 1k83:I (2.8) BS02 ZN 2.7.7.6 GO:0001172 ... P27999 11805306
    27063 1k83:J (2.8) BS01 ZN 2.7.7.6 GO:0001172 ... P22139 11805306
    27064 1k83:L (2.8) BS01 ZN 2.7.7.6 GO:0001172 ... P40422 11805306
    27065 1k8a:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    27066 1k8a:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    27067 1k8a:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    27068 1k8a:4 (3.0) BS01 rna ? GO:0003735 ... P32411 12150912
    27069 1k8a:4 (3.0) BS02 MG ? GO:0003735 ... P32411 12150912
    27070 1k8a:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    27071 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    27072 1k8a:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    27073 1k8a:E (3.0) BS01 rna ? GO:0003735 ... P12735 12150912
    27074 1k8a:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    27075 1k8a:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    27076 1k8a:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    27077 1k8a:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    27078 1k8a:J (3.0) BS01 rna ? GO:0003735 ... P60617 12150912
    27079 1k8a:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    27080 1k8a:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    27081 1k8a:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    27082 1k8a:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    27083 1k8a:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    27084 1k8a:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    27085 1k8a:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    27086 1k8a:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    27087 1k8a:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    27088 1k8a:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    27089 1k8a:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    27090 1k8a:T (3.0) BS01 rna ? GO:0003735 ... P12732 12150912
    27091 1k8a:U (3.0) BS01 rna ? GO:0003723 ... P10972 12150912
    27092 1k8a:U (3.0) BS02 MG ? GO:0003723 ... P10972 12150912
    27093 1k8a:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    27094 1k8a:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    27095 1k8a:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    27096 1k8a:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    27097 1k8a:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    27098 1k8a:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    27099 1k8a:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    27100 1k8c:A (2.1) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 12102621
    27101 1k8c:B (2.1) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 12102621
    27102 1k8c:C (2.1) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 12102621
    27103 1k8c:D (2.1) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 12102621
    27104 1k8d:A (2.3) BS01 peptide ? N/A P14429 11738047
    27105 1k8g:A (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    27106 1k8g:B (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    27107 1k8q:A (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    27108 1k8q:B (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    27109 1k8r:A (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11709168
    27110 1k8r:A (3.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 11709168
    27111 1k8w:A (1.85) BS01 rna 5.4.99.25 GO:0000049 ... P60340 11779468
    27112 1k8x:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    27113 1k8y:B (1.5) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    27114 1k8z:A (1.7) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756454
    27115 1k8z:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    27116 1k90:A (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    27117 1k90:B (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    27118 1k90:C (2.75) BS01 3AT 4.6.1.1 GO:0005576 ... P40136 11807546
    27119 1k90:D (2.75) BS01 CA ? GO:0000922 ... P0DP23 11807546
    27120 1k90:D (2.75) BS02 CA ? GO:0000922 ... P0DP23 11807546
    27121 1k90:E (2.75) BS01 CA ? GO:0000922 ... P0DP23 11807546
    27122 1k90:E (2.75) BS02 CA ? GO:0000922 ... P0DP23 11807546
    27123 1k90:F (2.75) BS01 CA ? GO:0000922 ... P0DP23 11807546
    27124 1k90:F (2.75) BS02 CA ? GO:0000922 ... P0DP23 11807546
    27125 1k93:D (2.95) BS01 CA ? GO:0000922 ... P0DP23 11807546
    27126 1k93:D (2.95) BS02 CA ? GO:0000922 ... P0DP23 11807546
    27127 1k93:E (2.95) BS01 CA ? GO:0000922 ... P0DP23 11807546
    27128 1k93:E (2.95) BS02 CA ? GO:0000922 ... P0DP23 11807546
    27129 1k93:F (2.95) BS01 CA ? GO:0000922 ... P0DP23 11807546
    27130 1k93:F (2.95) BS02 CA ? GO:0000922 ... P0DP23 11807546
    27131 1k94:A (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    27132 1k94:A (1.7) BS02 CA ? GO:0005509 ... P28676 11717497
    27133 1k94:B (1.7) BS01 CA ? GO:0005509 ... P28676 11717497
    27134 1k96:A (1.44) BS01 CA ? GO:0001726 ... P06703 11937060
    27135 1k96:A (1.44) BS02 CA ? GO:0001726 ... P06703 11937060
    27136 1k97:A (2.0) BS01 ASP 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    27137 1k97:A (2.0) BS02 CIR 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    27138 1k98:A (3.75) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    27139 1k9e:A (1.85) BS01 GCV 3.2.1.131 GO:0005576 ... Q09LY5 14573597
    27140 1k9f:A (1.75) BS01 XYP 3.2.1.131 GO:0005576 ... Q09LY5 14573597
    27141 1k9f:A (1.75) BS02 GCV 3.2.1.131 GO:0005576 ... Q09LY5 14573597
    27142 1k9i:A (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    27143 1k9i:A (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    27144 1k9i:A (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27145 1k9i:A (2.5) BS04 CA ? N/A Q9NNX6 11739956
    27146 1k9i:A (2.5) BS05 CA ? N/A Q9NNX6 11739956
    27147 1k9i:B (2.5) BS01 CA ? N/A Q9NNX6 11739956
    27148 1k9i:B (2.5) BS02 CA ? N/A Q9NNX6 11739956
    27149 1k9i:B (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27150 1k9i:C (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    27151 1k9i:C (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    27152 1k9i:C (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27153 1k9i:C (2.5) BS04 CA ? N/A Q9NNX6 11739956
    27154 1k9i:C (2.5) BS05 CA ? N/A Q9NNX6 11739956
    27155 1k9i:D (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    27156 1k9i:D (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    27157 1k9i:D (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27158 1k9i:D (2.5) BS04 CA ? N/A Q9NNX6 11739956
    27159 1k9i:D (2.5) BS05 CA ? N/A Q9NNX6 11739956
    27160 1k9i:E (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    27161 1k9i:E (2.5) BS02 CA ? N/A Q9NNX6 11739956
    27162 1k9i:E (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27163 1k9i:E (2.5) BS04 CA ? N/A Q9NNX6 11739956
    27164 1k9i:F (2.5) BS01 CA ? N/A Q9NNX6 11739956
    27165 1k9i:F (2.5) BS02 CA ? N/A Q9NNX6 11739956
    27166 1k9i:F (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27167 1k9i:G (2.5) BS01 CA ? N/A Q9NNX6 11739956
    27168 1k9i:G (2.5) BS02 CA ? N/A Q9NNX6 11739956
    27169 1k9i:G (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27170 1k9i:H (2.5) BS01 MAN ? N/A Q9NNX6 11739956
    27171 1k9i:H (2.5) BS02 MAN ? N/A Q9NNX6 11739956
    27172 1k9i:H (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27173 1k9i:H (2.5) BS04 CA ? N/A Q9NNX6 11739956
    27174 1k9i:H (2.5) BS05 CA ? N/A Q9NNX6 11739956
    27175 1k9i:I (2.5) BS01 CA ? N/A Q9NNX6 11739956
    27176 1k9i:I (2.5) BS02 CA ? N/A Q9NNX6 11739956
    27177 1k9i:I (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27178 1k9i:J (2.5) BS01 CA ? N/A Q9NNX6 11739956
    27179 1k9i:J (2.5) BS02 CA ? N/A Q9NNX6 11739956
    27180 1k9i:J (2.5) BS03 CA ? N/A Q9NNX6 11739956
    27181 1k9j:A (1.9) BS01 MAN ? N/A Q9H2X3 11739956
    27182 1k9j:A (1.9) BS02 MAN ? N/A Q9H2X3 11739956
    27183 1k9j:A (1.9) BS03 CA ? N/A Q9H2X3 11739956
    27184 1k9j:A (1.9) BS04 CA ? N/A Q9H2X3 11739956
    27185 1k9j:A (1.9) BS05 CA ? N/A Q9H2X3 11739956
    27186 1k9k:A (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    27187 1k9k:A (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    27188 1k9k:B (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    27189 1k9k:B (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    27190 1k9m:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    27191 1k9m:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    27192 1k9m:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    27193 1k9m:4 (3.0) BS01 rna ? GO:0003735 ... P32411 12150912
    27194 1k9m:4 (3.0) BS02 MG ? GO:0003735 ... P32411 12150912
    27195 1k9m:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    27196 1k9m:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    27197 1k9m:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    27198 1k9m:E (3.0) BS01 rna ? GO:0003735 ... P12735 12150912
    27199 1k9m:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    27200 1k9m:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).