SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    272201 4u3c:E (3.98) BS01 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272202 4u3c:E (3.98) BS02 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272203 4u3c:E (3.98) BS03 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272204 4u3c:E (3.98) BS04 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272205 4u3c:E (3.98) BS05 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272206 4u3c:F (3.98) BS01 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272207 4u3c:F (3.98) BS02 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272208 4u3c:F (3.98) BS03 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272209 4u3c:F (3.98) BS04 GLC 2.4.99.16 GO:0004553 ... P9WQ16 26245983
    272210 4u3d:A (1.25) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 25408833
    272211 4u3d:A (1.25) BS02 ZN 3.5.1.108 GO:0005737 ... O67648 25408833
    272212 4u3d:A (1.25) BS03 3BX 3.5.1.108 GO:0005737 ... O67648 25408833
    272213 4u3e:A (1.64) BS01 ZN 1.17.4.2 GO:0004748 ... Q9WYL6 25157154
    272214 4u3e:B (1.64) BS01 ZN 1.17.4.2 GO:0004748 ... Q9WYL6 25157154
    272215 4u3f:C (3.2312) BS01 HEM ? GO:0005737 ... P18946 N/A
    272216 4u3f:C (3.2312) BS02 HEM ? GO:0005737 ... P18946 N/A
    272217 4u3f:C (3.2312) BS03 Y52 ? GO:0005737 ... P18946 N/A
    272218 4u3f:C (3.2312) BS04 U10 ? GO:0005737 ... P18946 N/A
    272219 4u3f:D (3.2312) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    272220 4u3f:E (3.2312) BS01 FES 7.1.1.8 GO:0008121 ... Q5ZLR5 N/A
    272221 4u3f:P (3.2312) BS01 HEM ? GO:0005737 ... P18946 N/A
    272222 4u3f:P (3.2312) BS02 HEM ? GO:0005737 ... P18946 N/A
    272223 4u3f:P (3.2312) BS03 Y52 ? GO:0005737 ... P18946 N/A
    272224 4u3f:P (3.2312) BS04 U10 ? GO:0005737 ... P18946 N/A
    272225 4u3f:Q (3.2312) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 N/A
    272226 4u3f:R (3.2312) BS01 FES 7.1.1.8 GO:0008121 ... Q5ZLR5 N/A
    272227 4u3j:A (2.81) BS01 GTP 3.6.5.- GO:0000070 ... P09733 25097237
    272228 4u3j:B (2.81) BS01 GTP ? GO:0000022 ... P02557 25097237
    272229 4u3m:C0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    272230 4u3m:C1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    272231 4u3m:C2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    272232 4u3m:C3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    272233 4u3m:C3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    272234 4u3m:C3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    272235 4u3m:C4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    272236 4u3m:C5 (3.0) BS01 rna ? GO:0000054 ... Q01855 25209664
    272237 4u3m:C5 (3.0) BS02 rna ? GO:0000054 ... Q01855 25209664
    272238 4u3m:C5 (3.0) BS03 OHX ? GO:0000054 ... Q01855 25209664
    272239 4u3m:C6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    272240 4u3m:C7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    272241 4u3m:C8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    272242 4u3m:C8 (3.0) BS02 MG ? GO:0000054 ... P0CX55 25209664
    272243 4u3m:C9 (3.0) BS01 rna ? GO:0000054 ... P07280 25209664
    272244 4u3m:D0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    272245 4u3m:D2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    272246 4u3m:D3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    272247 4u3m:D4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    272248 4u3m:D5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    272249 4u3m:D6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    272250 4u3m:D6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    272251 4u3m:D7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    272252 4u3m:D8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    272253 4u3m:D9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    272254 4u3m:D9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    272255 4u3m:D9 (3.0) BS03 OHX ? GO:0002181 ... P41057 25209664
    272256 4u3m:E0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    272257 4u3m:E1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    272258 4u3m:E1 (3.0) BS02 ZN ? GO:0003735 ... P05759 25209664
    272259 4u3m:L2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    272260 4u3m:L2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    272261 4u3m:L2 (3.0) BS03 MG ? GO:0002181 ... P0CX45 25209664
    272262 4u3m:L3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    272263 4u3m:L3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    272264 4u3m:L3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    272265 4u3m:L4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    272266 4u3m:L4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    272267 4u3m:L4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    272268 4u3m:L5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    272269 4u3m:L5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    272270 4u3m:L6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    272271 4u3m:L7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    272272 4u3m:L7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    272273 4u3m:L8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    272274 4u3m:L8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    272275 4u3m:L9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    272276 4u3m:M0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    272277 4u3m:M0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    272278 4u3m:M0 (3.0) BS03 MG ? GO:0000027 ... P41805 25209664
    272279 4u3m:M0 (3.0) BS04 OHX ? GO:0000027 ... P41805 25209664
    272280 4u3m:M1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    272281 4u3m:M1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    272282 4u3m:M3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    272283 4u3m:M3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    272284 4u3m:M4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    272285 4u3m:M5 (3.0) BS01 rna ? GO:0000470 ... P05748 25209664
    272286 4u3m:M5 (3.0) BS02 rna ? GO:0000470 ... P05748 25209664
    272287 4u3m:M5 (3.0) BS03 OHX ? GO:0000470 ... P05748 25209664
    272288 4u3m:M6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    272289 4u3m:M7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    272290 4u3m:M7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    272291 4u3m:M7 (3.0) BS03 MG ? GO:0000448 ... P05740 25209664
    272292 4u3m:M7 (3.0) BS04 OHX ? GO:0000448 ... P05740 25209664
    272293 4u3m:M7 (3.0) BS05 OHX ? GO:0000448 ... P05740 25209664
    272294 4u3m:M8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    272295 4u3m:M9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    272296 4u3m:M9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    272297 4u3m:M9 (3.0) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    272298 4u3m:N0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    272299 4u3m:N0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    272300 4u3m:N1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    272301 4u3m:N1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    272302 4u3m:N1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    272303 4u3m:N2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    272304 4u3m:N3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    272305 4u3m:N3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    272306 4u3m:N4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    272307 4u3m:N4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    272308 4u3m:N5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    272309 4u3m:N5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    272310 4u3m:N6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    272311 4u3m:N6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    272312 4u3m:N7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    272313 4u3m:N7 (3.0) BS02 OHX ? GO:0002181 ... P0C2H6 25209664
    272314 4u3m:N8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    272315 4u3m:N8 (3.0) BS02 MG ? GO:0002181 ... P02406 25209664
    272316 4u3m:N8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    272317 4u3m:N9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    272318 4u3m:N9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    272319 4u3m:O0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    272320 4u3m:O1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    272321 4u3m:O1 (3.0) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    272322 4u3m:O2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    272323 4u3m:O3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    272324 4u3m:O3 (3.0) BS02 OHX ? GO:0000027 ... P05744 25209664
    272325 4u3m:O4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    272326 4u3m:O4 (3.0) BS02 MG ? GO:0002181 ... P87262 25209664
    272327 4u3m:O5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    272328 4u3m:O5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    272329 4u3m:O6 (3.0) BS01 rna ? GO:0000470 ... P05745 25209664
    272330 4u3m:O7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    272331 4u3m:O7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    272332 4u3m:O7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    272333 4u3m:O7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    272334 4u3m:O7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    272335 4u3m:O8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    272336 4u3m:O9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    272337 4u3m:O9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    272338 4u3m:O9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    272339 4u3m:Q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    272340 4u3m:Q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    272341 4u3m:Q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    272342 4u3m:Q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    272343 4u3m:Q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    272344 4u3m:Q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    272345 4u3m:Q3 (3.0) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    272346 4u3m:S0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    272347 4u3m:S1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    272348 4u3m:S2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    272349 4u3m:S3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    272350 4u3m:S4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    272351 4u3m:S4 (3.0) BS02 MG ? GO:0002181 ... P0CX35 25209664
    272352 4u3m:S5 (3.0) BS01 rna ? GO:0000054 ... P26783 25209664
    272353 4u3m:S6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    272354 4u3m:S7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    272355 4u3m:S8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    272356 4u3m:S8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    272357 4u3m:S9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    272358 4u3m:S9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    272359 4u3m:SM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    272360 4u3m:SM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    272361 4u3m:SR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    272362 4u3m:SR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    272363 4u3m:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    272364 4u3m:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    272365 4u3m:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    272366 4u3m:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    272367 4u3m:c3 (3.0) BS02 OHX ? GO:0000462 ... P05756 25209664
    272368 4u3m:c4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    272369 4u3m:c5 (3.0) BS01 rna ? GO:0000054 ... Q01855 25209664
    272370 4u3m:c5 (3.0) BS02 OHX ? GO:0000054 ... Q01855 25209664
    272371 4u3m:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    272372 4u3m:c7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    272373 4u3m:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    272374 4u3m:c9 (3.0) BS01 rna ? GO:0000054 ... P07280 25209664
    272375 4u3m:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    272376 4u3m:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    272377 4u3m:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    272378 4u3m:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 25209664
    272379 4u3m:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    272380 4u3m:d5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    272381 4u3m:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    272382 4u3m:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    272383 4u3m:d6 (3.0) BS03 MG ? GO:0003735 ... P39939 25209664
    272384 4u3m:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    272385 4u3m:d7 (3.0) BS02 ZN ? GO:0000028 ... P35997 25209664
    272386 4u3m:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    272387 4u3m:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    272388 4u3m:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    272389 4u3m:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    272390 4u3m:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    272391 4u3m:l2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    272392 4u3m:l2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    272393 4u3m:l3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    272394 4u3m:l3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    272395 4u3m:l3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    272396 4u3m:l4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    272397 4u3m:l4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    272398 4u3m:l4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    272399 4u3m:l4 (3.0) BS04 OHX ? GO:0002181 ... P10664 25209664
    272400 4u3m:l5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).