SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    273001 4u3u:o8 (2.9) BS01 rna ? GO:0002181 ... P49167 25209664
    273002 4u3u:o9 (2.9) BS01 rna ? GO:0002181 ... P04650 25209664
    273003 4u3u:o9 (2.9) BS02 rna ? GO:0002181 ... P04650 25209664
    273004 4u3u:o9 (2.9) BS03 OHX ? GO:0002181 ... P04650 25209664
    273005 4u3u:p0 (2.9) BS01 rna ? GO:0000027 ... P05317 25209664
    273006 4u3u:q0 (2.9) BS01 rna ? GO:0003735 ... P0CH08 25209664
    273007 4u3u:q0 (2.9) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    273008 4u3u:q2 (2.9) BS01 rna ? GO:0002181 ... P0CX27 25209664
    273009 4u3u:q2 (2.9) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    273010 4u3u:q2 (2.9) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    273011 4u3u:q3 (2.9) BS01 rna ? GO:0002181 ... P0CX25 25209664
    273012 4u3u:q3 (2.9) BS02 rna ? GO:0002181 ... P0CX25 25209664
    273013 4u3u:q3 (2.9) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    273014 4u3u:s0 (2.9) BS01 rna ? GO:0000028 ... P32905 25209664
    273015 4u3u:s1 (2.9) BS01 rna ? GO:0000462 ... P33442 25209664
    273016 4u3u:s2 (2.9) BS01 rna ? GO:0000054 ... P25443 25209664
    273017 4u3u:s3 (2.9) BS01 rna ? GO:0000054 ... P05750 25209664
    273018 4u3u:s4 (2.9) BS01 rna ? GO:0002181 ... P0CX35 25209664
    273019 4u3u:s4 (2.9) BS02 MG ? GO:0002181 ... P0CX35 25209664
    273020 4u3u:s5 (2.9) BS01 rna ? GO:0000054 ... P26783 25209664
    273021 4u3u:s6 (2.9) BS01 rna ? GO:0000462 ... P0CX37 25209664
    273022 4u3u:s7 (2.9) BS01 rna ? GO:0002181 ... P26786 25209664
    273023 4u3u:s8 (2.9) BS01 rna ? GO:0000462 ... P0CX39 25209664
    273024 4u3u:s8 (2.9) BS02 rna ? GO:0000462 ... P0CX39 25209664
    273025 4u3u:s8 (2.9) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    273026 4u3u:s9 (2.9) BS01 rna ? GO:0000462 ... O13516 25209664
    273027 4u3u:s9 (2.9) BS02 OHX ? GO:0000462 ... O13516 25209664
    273028 4u3u:sM (2.9) BS01 rna ? GO:0000723 ... P39015 25209664
    273029 4u3u:sM (2.9) BS02 rna ? GO:0000723 ... P39015 25209664
    273030 4u3u:sM (2.9) BS03 MG ? GO:0000723 ... P39015 25209664
    273031 4u3u:sR (2.9) BS01 rna ? GO:0001965 ... P38011 25209664
    273032 4u3w:A (1.9501) BS01 MG ? GO:0016491 ... B4EFS9 N/A
    273033 4u3w:B (1.9501) BS01 MG ? GO:0016491 ... B4EFS9 N/A
    273034 4u3w:B (1.9501) BS02 MG ? GO:0016491 ... B4EFS9 N/A
    273035 4u40:A (2.3) BS01 ANP 2.7.11.1 GO:0004672 ... O95819 N/A
    273036 4u40:A (2.3) BS02 MG 2.7.11.1 GO:0004672 ... O95819 N/A
    273037 4u40:A (2.3) BS03 MG 2.7.11.1 GO:0004672 ... O95819 N/A
    273038 4u41:A (2.2) BS01 3C8 2.7.11.1 GO:0004672 ... O95819 N/A BindingDB: IC50=6.20nM, Ki=10.7nM
    273039 4u41:A (2.2) BS02 MG 2.7.11.1 GO:0004672 ... O95819 N/A
    273040 4u42:A (2.504) BS01 3C8 2.7.11.1 GO:0004672 ... O95819 N/A BindingDB: IC50=6.20nM, Ki=10.7nM
    273041 4u42:A (2.504) BS02 MG 2.7.11.1 GO:0004672 ... O95819 N/A
    273042 4u42:B (2.504) BS01 3C8 2.7.11.1 GO:0004672 ... O95819 N/A BindingDB: IC50=6.20nM, Ki=10.7nM
    273043 4u42:B (2.504) BS02 MG 2.7.11.1 GO:0004672 ... O95819 N/A
    273044 4u43:A (2.18) BS01 3D8 2.7.11.1 GO:0004672 ... O95819 25139565 MOAD: Kd=48uM
    BindingDB: Kd=48000nM
    273045 4u44:A (2.43) BS01 3D9 2.7.11.1 GO:0004672 ... O95819 25139565 MOAD: ic50=0.008uM
    BindingDB: IC50=8.0nM
    273046 4u45:A (2.58) BS01 MG 2.7.11.1 GO:0004672 ... O95819 25139565
    273047 4u45:A (2.58) BS02 MG 2.7.11.1 GO:0004672 ... O95819 25139565
    273048 4u45:A (2.58) BS03 3DC 2.7.11.1 GO:0004672 ... O95819 25139565
    273049 4u49:B (1.8) BS01 CA 4.2.2.2 GO:0005576 ... Q47465 N/A
    273050 4u4a:A (3.51) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 N/A
    273051 4u4a:B (3.51) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 N/A
    273052 4u4a:C (3.51) BS01 peptide 2.3.2.27 GO:0003677 ... P38398 N/A
    273053 4u4f:A (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    273054 4u4f:B (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    273055 4u4f:C (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    273056 4u4f:D (4.79) BS01 NWD ? GO:0000149 ... P19491 25103407
    273057 4u4g:A (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    273058 4u4g:B (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    273059 4u4g:C (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    273060 4u4g:D (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    273061 4u4l:A (1.9) BS01 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273062 4u4l:A (1.9) BS02 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273063 4u4l:A (1.9) BS03 3C7 3.5.2.6 GO:0008800 ... C7C422 N/A
    273064 4u4l:B (1.9) BS01 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273065 4u4l:B (1.9) BS02 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273066 4u4l:B (1.9) BS03 3C7 3.5.2.6 GO:0008800 ... C7C422 N/A
    273067 4u4l:C (1.9) BS01 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273068 4u4l:C (1.9) BS02 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273069 4u4l:C (1.9) BS03 3C7 3.5.2.6 GO:0008800 ... C7C422 N/A
    273070 4u4l:D (1.9) BS01 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273071 4u4l:D (1.9) BS02 ZN 3.5.2.6 GO:0008800 ... C7C422 N/A
    273072 4u4l:D (1.9) BS03 3C7 3.5.2.6 GO:0008800 ... C7C422 N/A
    273073 4u4m:A (3.09) BS01 PYR 4.1.2.28
    4.1.2.51
    GO:0005737 ... P75682 N/A
    273074 4u4m:B (3.09) BS01 PYR 4.1.2.28
    4.1.2.51
    GO:0005737 ... P75682 N/A
    273075 4u4m:C (3.09) BS01 PYR 4.1.2.28
    4.1.2.51
    GO:0005737 ... P75682 N/A
    273076 4u4m:D (3.09) BS01 PYR 4.1.2.28
    4.1.2.51
    GO:0005737 ... P75682 N/A
    273077 4u4n:C0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    273078 4u4n:C1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    273079 4u4n:C2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    273080 4u4n:C3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    273081 4u4n:C3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    273082 4u4n:C3 (3.1) BS03 OHX ? GO:0000462 ... P05756 25209664
    273083 4u4n:C4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    273084 4u4n:C5 (3.1) BS01 rna ? GO:0000054 ... Q01855 25209664
    273085 4u4n:C5 (3.1) BS02 rna ? GO:0000054 ... Q01855 25209664
    273086 4u4n:C5 (3.1) BS03 OHX ? GO:0000054 ... Q01855 25209664
    273087 4u4n:C6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    273088 4u4n:C7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    273089 4u4n:C8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    273090 4u4n:C9 (3.1) BS01 rna ? GO:0000054 ... P07280 25209664
    273091 4u4n:D0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    273092 4u4n:D1 (3.1) BS01 rna ? GO:0000447 ... P0C0V8 25209664
    273093 4u4n:D2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    273094 4u4n:D3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    273095 4u4n:D4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    273096 4u4n:D5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    273097 4u4n:D6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    273098 4u4n:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    273099 4u4n:D7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    273100 4u4n:D8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    273101 4u4n:D9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    273102 4u4n:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    273103 4u4n:D9 (3.1) BS03 OHX ? GO:0002181 ... P41057 25209664
    273104 4u4n:E0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    273105 4u4n:E1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    273106 4u4n:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 25209664
    273107 4u4n:L2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    273108 4u4n:L2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    273109 4u4n:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    273110 4u4n:L3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    273111 4u4n:L3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    273112 4u4n:L3 (3.1) BS03 OHX ? GO:0000027 ... P14126 25209664
    273113 4u4n:L3 (3.1) BS04 OHX ? GO:0000027 ... P14126 25209664
    273114 4u4n:L4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    273115 4u4n:L4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    273116 4u4n:L4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    273117 4u4n:L5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    273118 4u4n:L5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    273119 4u4n:L6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    273120 4u4n:L7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    273121 4u4n:L7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    273122 4u4n:L8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    273123 4u4n:L8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    273124 4u4n:L9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    273125 4u4n:M0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    273126 4u4n:M0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    273127 4u4n:M0 (3.1) BS03 MG ? GO:0000027 ... P41805 25209664
    273128 4u4n:M1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    273129 4u4n:M1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    273130 4u4n:M3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    273131 4u4n:M3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    273132 4u4n:M4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    273133 4u4n:M5 (3.1) BS01 rna ? GO:0000470 ... P05748 25209664
    273134 4u4n:M5 (3.1) BS02 rna ? GO:0000470 ... P05748 25209664
    273135 4u4n:M5 (3.1) BS03 OHX ? GO:0000470 ... P05748 25209664
    273136 4u4n:M6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    273137 4u4n:M7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    273138 4u4n:M7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    273139 4u4n:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 25209664
    273140 4u4n:M7 (3.1) BS04 OHX ? GO:0000448 ... P05740 25209664
    273141 4u4n:M7 (3.1) BS05 OHX ? GO:0000448 ... P05740 25209664
    273142 4u4n:M8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    273143 4u4n:M9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    273144 4u4n:M9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    273145 4u4n:M9 (3.1) BS03 MG ? GO:0002181 ... P0CX82 25209664
    273146 4u4n:M9 (3.1) BS04 OHX ? GO:0002181 ... P0CX82 25209664
    273147 4u4n:N0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    273148 4u4n:N0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    273149 4u4n:N1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    273150 4u4n:N1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    273151 4u4n:N1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    273152 4u4n:N2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    273153 4u4n:N3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    273154 4u4n:N3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    273155 4u4n:N4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    273156 4u4n:N4 (3.1) BS02 rna ? GO:0002181 ... P04449 25209664
    273157 4u4n:N5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    273158 4u4n:N5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    273159 4u4n:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    273160 4u4n:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    273161 4u4n:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    273162 4u4n:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    273163 4u4n:N8 (3.1) BS02 MG ? GO:0002181 ... P02406 25209664
    273164 4u4n:N8 (3.1) BS03 MG ? GO:0002181 ... P02406 25209664
    273165 4u4n:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    273166 4u4n:N9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    273167 4u4n:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    273168 4u4n:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    273169 4u4n:O1 (3.1) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    273170 4u4n:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    273171 4u4n:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    273172 4u4n:O3 (3.1) BS02 OHX ? GO:0000027 ... P05744 25209664
    273173 4u4n:O4 (3.1) BS01 rna ? GO:0002181 ... P87262 25209664
    273174 4u4n:O4 (3.1) BS02 MG ? GO:0002181 ... P87262 25209664
    273175 4u4n:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    273176 4u4n:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    273177 4u4n:O6 (3.1) BS01 rna ? GO:0000470 ... P05745 25209664
    273178 4u4n:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    273179 4u4n:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    273180 4u4n:O7 (3.1) BS03 OHX ? GO:0000448 ... P49166 25209664
    273181 4u4n:O7 (3.1) BS04 OHX ? GO:0000448 ... P49166 25209664
    273182 4u4n:O7 (3.1) BS05 ZN ? GO:0000448 ... P49166 25209664
    273183 4u4n:O7 (3.1) BS06 OHX ? GO:0000448 ... P49166 25209664
    273184 4u4n:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    273185 4u4n:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    273186 4u4n:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    273187 4u4n:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    273188 4u4n:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    273189 4u4n:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    273190 4u4n:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    273191 4u4n:Q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    273192 4u4n:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    273193 4u4n:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    273194 4u4n:S0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    273195 4u4n:S1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    273196 4u4n:S1 (3.1) BS02 OHX ? GO:0000462 ... P33442 25209664
    273197 4u4n:S2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    273198 4u4n:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    273199 4u4n:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    273200 4u4n:S5 (3.1) BS01 rna ? GO:0000054 ... P26783 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).