SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    273601 4u4o:q2 (3.6) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    273602 4u4o:q2 (3.6) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    273603 4u4o:q3 (3.6) BS01 rna ? GO:0002181 ... P0CX25 25209664
    273604 4u4o:q3 (3.6) BS02 rna ? GO:0002181 ... P0CX25 25209664
    273605 4u4o:q3 (3.6) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    273606 4u4o:s0 (3.6) BS01 rna ? GO:0000028 ... P32905 25209664
    273607 4u4o:s1 (3.6) BS01 rna ? GO:0000462 ... P33442 25209664
    273608 4u4o:s1 (3.6) BS02 OHX ? GO:0000462 ... P33442 25209664
    273609 4u4o:s1 (3.6) BS03 OHX ? GO:0000462 ... P33442 25209664
    273610 4u4o:s2 (3.6) BS01 rna ? GO:0000054 ... P25443 25209664
    273611 4u4o:s3 (3.6) BS01 rna ? GO:0000054 ... P05750 25209664
    273612 4u4o:s4 (3.6) BS01 rna ? GO:0002181 ... P0CX35 25209664
    273613 4u4o:s4 (3.6) BS02 MG ? GO:0002181 ... P0CX35 25209664
    273614 4u4o:s5 (3.6) BS01 rna ? GO:0000054 ... P26783 25209664
    273615 4u4o:s6 (3.6) BS01 rna ? GO:0000462 ... P0CX37 25209664
    273616 4u4o:s7 (3.6) BS01 rna ? GO:0002181 ... P26786 25209664
    273617 4u4o:s8 (3.6) BS01 rna ? GO:0000462 ... P0CX39 25209664
    273618 4u4o:s8 (3.6) BS02 rna ? GO:0000462 ... P0CX39 25209664
    273619 4u4o:s8 (3.6) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    273620 4u4o:s9 (3.6) BS01 rna ? GO:0000462 ... O13516 25209664
    273621 4u4o:sM (3.6) BS01 rna ? GO:0000723 ... P39015 25209664
    273622 4u4o:sM (3.6) BS02 rna ? GO:0000723 ... P39015 25209664
    273623 4u4o:sR (3.6) BS01 rna ? GO:0001965 ... P38011 25209664
    273624 4u4o:sR (3.6) BS02 OHX ? GO:0001965 ... P38011 25209664
    273625 4u4q:C0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    273626 4u4q:C1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    273627 4u4q:C2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    273628 4u4q:C3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    273629 4u4q:C3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    273630 4u4q:C3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    273631 4u4q:C4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    273632 4u4q:C5 (3.0) BS01 rna ? GO:0000054 ... Q01855 25209664
    273633 4u4q:C5 (3.0) BS02 rna ? GO:0000054 ... Q01855 25209664
    273634 4u4q:C5 (3.0) BS03 OHX ? GO:0000054 ... Q01855 25209664
    273635 4u4q:C6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    273636 4u4q:C7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    273637 4u4q:C8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    273638 4u4q:C8 (3.0) BS02 MG ? GO:0000054 ... P0CX55 25209664
    273639 4u4q:C9 (3.0) BS01 rna ? GO:0000054 ... P07280 25209664
    273640 4u4q:D0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    273641 4u4q:D2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    273642 4u4q:D3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    273643 4u4q:D4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    273644 4u4q:D5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    273645 4u4q:D6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    273646 4u4q:D6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    273647 4u4q:D7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    273648 4u4q:D8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    273649 4u4q:D9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    273650 4u4q:D9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    273651 4u4q:D9 (3.0) BS03 OHX ? GO:0002181 ... P41057 25209664
    273652 4u4q:E0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    273653 4u4q:E1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    273654 4u4q:E1 (3.0) BS02 ZN ? GO:0003735 ... P05759 25209664
    273655 4u4q:L2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    273656 4u4q:L2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    273657 4u4q:L2 (3.0) BS03 MG ? GO:0002181 ... P0CX45 25209664
    273658 4u4q:L2 (3.0) BS04 MG ? GO:0002181 ... P0CX45 25209664
    273659 4u4q:L3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    273660 4u4q:L3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    273661 4u4q:L3 (3.0) BS03 OHX ? GO:0000027 ... P14126 25209664
    273662 4u4q:L3 (3.0) BS04 OHX ? GO:0000027 ... P14126 25209664
    273663 4u4q:L4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    273664 4u4q:L4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    273665 4u4q:L4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    273666 4u4q:L5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    273667 4u4q:L5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    273668 4u4q:L6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    273669 4u4q:L7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    273670 4u4q:L7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    273671 4u4q:L8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    273672 4u4q:L8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    273673 4u4q:L9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    273674 4u4q:M0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    273675 4u4q:M0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    273676 4u4q:M0 (3.0) BS03 MG ? GO:0000027 ... P41805 25209664
    273677 4u4q:M1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    273678 4u4q:M1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    273679 4u4q:M3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    273680 4u4q:M3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    273681 4u4q:M4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    273682 4u4q:M5 (3.0) BS01 rna ? GO:0000470 ... P05748 25209664
    273683 4u4q:M5 (3.0) BS02 rna ? GO:0000470 ... P05748 25209664
    273684 4u4q:M5 (3.0) BS03 OHX ? GO:0000470 ... P05748 25209664
    273685 4u4q:M6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    273686 4u4q:M7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    273687 4u4q:M7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    273688 4u4q:M7 (3.0) BS03 MG ? GO:0000448 ... P05740 25209664
    273689 4u4q:M7 (3.0) BS04 OHX ? GO:0000448 ... P05740 25209664
    273690 4u4q:M7 (3.0) BS05 OHX ? GO:0000448 ... P05740 25209664
    273691 4u4q:M8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    273692 4u4q:M9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    273693 4u4q:M9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    273694 4u4q:M9 (3.0) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    273695 4u4q:N0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    273696 4u4q:N0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    273697 4u4q:N1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    273698 4u4q:N1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    273699 4u4q:N1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    273700 4u4q:N2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    273701 4u4q:N3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    273702 4u4q:N3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    273703 4u4q:N4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    273704 4u4q:N4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    273705 4u4q:N5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    273706 4u4q:N5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    273707 4u4q:N6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    273708 4u4q:N6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    273709 4u4q:N7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    273710 4u4q:N8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    273711 4u4q:N8 (3.0) BS02 MG ? GO:0002181 ... P02406 25209664
    273712 4u4q:N8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    273713 4u4q:N9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    273714 4u4q:N9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    273715 4u4q:O0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    273716 4u4q:O1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    273717 4u4q:O1 (3.0) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    273718 4u4q:O2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    273719 4u4q:O3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    273720 4u4q:O3 (3.0) BS02 OHX ? GO:0000027 ... P05744 25209664
    273721 4u4q:O4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    273722 4u4q:O4 (3.0) BS02 MG ? GO:0002181 ... P87262 25209664
    273723 4u4q:O5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    273724 4u4q:O5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    273725 4u4q:O6 (3.0) BS01 rna ? GO:0000470 ... P05745 25209664
    273726 4u4q:O7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    273727 4u4q:O7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    273728 4u4q:O7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    273729 4u4q:O7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    273730 4u4q:O7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    273731 4u4q:O7 (3.0) BS06 OHX ? GO:0000448 ... P49166 25209664
    273732 4u4q:O8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    273733 4u4q:O9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    273734 4u4q:O9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    273735 4u4q:Q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    273736 4u4q:Q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    273737 4u4q:Q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    273738 4u4q:Q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    273739 4u4q:Q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    273740 4u4q:Q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    273741 4u4q:Q3 (3.0) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    273742 4u4q:S0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    273743 4u4q:S1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    273744 4u4q:S2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    273745 4u4q:S3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    273746 4u4q:S4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    273747 4u4q:S5 (3.0) BS01 rna ? GO:0000054 ... P26783 25209664
    273748 4u4q:S6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    273749 4u4q:S7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    273750 4u4q:S8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    273751 4u4q:S8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    273752 4u4q:S8 (3.0) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    273753 4u4q:S9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    273754 4u4q:SM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    273755 4u4q:SM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    273756 4u4q:SM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    273757 4u4q:SR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    273758 4u4q:SR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    273759 4u4q:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    273760 4u4q:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    273761 4u4q:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    273762 4u4q:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    273763 4u4q:c3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    273764 4u4q:c3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    273765 4u4q:c4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    273766 4u4q:c5 (3.0) BS01 rna ? GO:0000054 ... Q01855 25209664
    273767 4u4q:c5 (3.0) BS02 OHX ? GO:0000054 ... Q01855 25209664
    273768 4u4q:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    273769 4u4q:c7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    273770 4u4q:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    273771 4u4q:c9 (3.0) BS01 rna ? GO:0000054 ... P07280 25209664
    273772 4u4q:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    273773 4u4q:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    273774 4u4q:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    273775 4u4q:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 25209664
    273776 4u4q:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    273777 4u4q:d5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    273778 4u4q:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    273779 4u4q:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    273780 4u4q:d6 (3.0) BS03 MG ? GO:0003735 ... P39939 25209664
    273781 4u4q:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    273782 4u4q:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    273783 4u4q:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    273784 4u4q:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    273785 4u4q:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    273786 4u4q:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    273787 4u4q:l2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    273788 4u4q:l2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    273789 4u4q:l3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    273790 4u4q:l3 (3.0) BS02 MG ? GO:0000027 ... P14126 25209664
    273791 4u4q:l3 (3.0) BS03 MG ? GO:0000027 ... P14126 25209664
    273792 4u4q:l3 (3.0) BS04 OHX ? GO:0000027 ... P14126 25209664
    273793 4u4q:l4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    273794 4u4q:l4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    273795 4u4q:l4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    273796 4u4q:l4 (3.0) BS04 OHX ? GO:0002181 ... P10664 25209664
    273797 4u4q:l5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    273798 4u4q:l5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    273799 4u4q:l5 (3.0) BS03 OHX ? GO:0000027 ... P26321 25209664
    273800 4u4q:l5 (3.0) BS04 OHX ? GO:0000027 ... P26321 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).