SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27201 1k9m:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    27202 1k9m:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    27203 1k9m:J (3.0) BS01 rna ? GO:0003735 ... P60617 12150912
    27204 1k9m:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    27205 1k9m:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    27206 1k9m:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    27207 1k9m:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    27208 1k9m:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    27209 1k9m:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    27210 1k9m:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    27211 1k9m:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    27212 1k9m:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    27213 1k9m:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    27214 1k9m:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    27215 1k9m:T (3.0) BS01 rna ? GO:0003735 ... P12732 12150912
    27216 1k9m:U (3.0) BS01 rna ? GO:0003723 ... P10972 12150912
    27217 1k9m:U (3.0) BS02 MG ? GO:0003723 ... P10972 12150912
    27218 1k9m:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    27219 1k9m:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    27220 1k9m:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    27221 1k9m:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    27222 1k9m:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    27223 1k9m:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    27224 1k9m:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    27225 1k9q:A (-1.00) BS01 peptide ? N/A P46937 11743730
    27226 1k9r:A (-1.00) BS01 peptide ? N/A P46937 11743730
    27227 1k9s:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27228 1k9s:A (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27229 1k9s:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27230 1k9s:B (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27231 1k9s:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27232 1k9s:C (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27233 1k9s:D (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27234 1k9s:D (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27235 1k9s:D (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27236 1k9s:E (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27237 1k9s:E (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27238 1k9s:E (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27239 1k9s:F (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27240 1k9s:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27241 1k9s:F (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    27242 1k9u:A (1.75) BS01 CA ? GO:0005509 ... O82040 12356717
    27243 1k9u:A (1.75) BS02 CA ? GO:0005509 ... O82040 12356717
    27244 1k9u:B (1.75) BS01 CA ? GO:0005509 ... O82040 12356717
    27245 1k9u:B (1.75) BS02 CA ? GO:0005509 ... O82040 12356717
    27246 1k9y:A (1.9) BS01 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    27247 1k9y:A (1.9) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    27248 1k9y:A (1.9) BS03 AMP 3.1.3.7 GO:0000103 ... P32179 12126627
    27249 1k9z:A (1.5) BS01 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    27250 1k9z:A (1.5) BS02 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    27251 1k9z:A (1.5) BS03 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    27252 1k9z:A (1.5) BS04 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    27253 1k9z:A (1.5) BS05 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    27254 1k9z:A (1.5) BS06 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    27255 1ka0:A (1.8) BS01 AMP 3.1.3.7 GO:0000103 ... P32179 N/A
    27256 1ka1:A (1.3) BS01 CA 3.1.3.7 GO:0000103 ... P32179 12126627
    27257 1ka1:A (1.3) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    27258 1ka1:A (1.3) BS03 A3P 3.1.3.7 GO:0000103 ... P32179 12126627
    27259 1ka2:A (2.2) BS01 MG 3.4.17.19 GO:0004181 ... Q8U3L0 11839307
    27260 1ka6:A (-1.00) BS01 peptide ? GO:0002376 ... O60880 11823424
    27261 1ka7:A (-1.00) BS01 peptide ? GO:0002376 ... O60880 11823424
    27262 1kae:A (1.7) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    27263 1kae:A (1.7) BS02 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    27264 1kae:A (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    27265 1kae:B (1.7) BS01 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    27266 1kae:B (1.7) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    27267 1kae:B (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    27268 1kah:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    27269 1kah:A (2.1) BS02 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    27270 1kah:A (2.1) BS03 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    27271 1kah:B (2.1) BS01 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    27272 1kah:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    27273 1kak:A (2.5) BS01 FNP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: ic50=26uM
    27274 1kao:A (1.7) BS01 GDP 3.6.5.2 GO:0000287 ... P10114 9312017
    27275 1kap:P (1.64) BS01 peptide 3.4.24.40 GO:0001869 ... Q03023 8253063
    27276 1kap:P (1.64) BS02 ZN 3.4.24.40 GO:0001869 ... Q03023 8253063
    27277 1kap:P (1.64) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27278 1kap:P (1.64) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27279 1kap:P (1.64) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27280 1kap:P (1.64) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27281 1kap:P (1.64) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27282 1kap:P (1.64) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27283 1kap:P (1.64) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27284 1kap:P (1.64) BS10 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    27285 1kaq:A (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    27286 1kaq:B (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    27287 1kaq:C (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    27288 1kaq:D (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    27289 1kaq:E (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    27290 1kaq:F (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    27291 1kar:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    27292 1kar:A (2.1) BS02 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    27293 1kar:B (2.1) BS01 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    27294 1kar:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    27295 1kar:B (2.1) BS03 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    27296 1kat:V (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    27297 1kat:V (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    27298 1kat:W (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    27299 1kat:W (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    27300 1kav:A (2.35) BS01 FEP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: Ki=1.5uM
    27301 1kax:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    27302 1kay:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    27303 1kaz:A (1.7) BS01 ATP 3.6.4.10 GO:0005524 ... P19120 8663302
    27304 1kb0:A (1.44) BS01 CA 1.1.9.1 GO:0005509 ... Q46444 11714714
    27305 1kb0:A (1.44) BS02 HEC 1.1.9.1 GO:0005509 ... Q46444 11714714
    27306 1kb0:A (1.44) BS03 TFB 1.1.9.1 GO:0005509 ... Q46444 11714714
    27307 1kb0:A (1.44) BS04 PQQ 1.1.9.1 GO:0005509 ... Q46444 11714714
    27308 1kb2:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    27309 1kb2:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    27310 1kb2:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    27311 1kb2:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    27312 1kb2:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    27313 1kb2:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    27314 1kb2:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    27315 1kb2:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    27316 1kb3:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    27317 1kb4:A (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    27318 1kb4:A (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    27319 1kb4:A (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    27320 1kb4:A (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    27321 1kb4:B (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    27322 1kb4:B (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    27323 1kb4:B (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    27324 1kb4:B (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    27325 1kb6:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    27326 1kb6:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    27327 1kb6:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    27328 1kb6:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    27329 1kb6:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    27330 1kb6:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    27331 1kb6:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    27332 1kb6:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    27333 1kb9:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    27334 1kb9:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    27335 1kb9:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11726495
    27336 1kb9:C (2.3) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 11726495
    27337 1kb9:C (2.3) BS05 PIE 7.1.1.8 GO:0005739 ... P00163 11726495
    27338 1kb9:C (2.3) BS06 CDL 7.1.1.8 GO:0005739 ... P00163 11726495
    27339 1kb9:D (2.3) BS01 PIE 7.1.1.8 GO:0009055 ... P07143 11726495
    27340 1kb9:D (2.3) BS02 CDL 7.1.1.8 GO:0009055 ... P07143 11726495
    27341 1kb9:D (2.3) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 11726495
    27342 1kb9:E (2.3) BS01 PIE 7.1.1.8 GO:0008121 ... P08067 11726495
    27343 1kb9:E (2.3) BS02 FES 7.1.1.8 GO:0008121 ... P08067 11726495
    27344 1kbb:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    27345 1kbc:A (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    27346 1kbc:A (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    27347 1kbc:A (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    27348 1kbc:A (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    27349 1kbc:A (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    27350 1kbc:A (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    27351 1kbc:B (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    27352 1kbc:B (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    27353 1kbc:B (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    27354 1kbc:B (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    27355 1kbc:B (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    27356 1kbc:B (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    27357 1kbe:A (-1.00) BS01 ZN 2.7.11.1 N/A Q61097 11786023
    27358 1kbe:A (-1.00) BS02 ZN 2.7.11.1 N/A Q61097 11786023
    27359 1kbf:A (-1.00) BS01 ZN 2.7.11.1 N/A Q61097 11786023
    27360 1kbf:A (-1.00) BS02 ZN 2.7.11.1 N/A Q61097 11786023
    27361 1kbg:H (2.2) BS01 peptide ? N/A P01901 10023770
    27362 1kbg:H (2.2) BS02 FUC ? N/A P01901 10023770
    27363 1kbi:A (2.3) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 11914072
    27364 1kbi:A (2.3) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 11914072
    27365 1kbi:B (2.3) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 11914072
    27366 1kbi:B (2.3) BS02 PYR 1.1.2.3 GO:0016491 ... P00175 11914072
    27367 1kbj:A (2.5) BS01 FMN 1.1.2.3 GO:0010181 ... P00175 11914072
    27368 1kbj:B (2.5) BS01 FMN 1.1.2.3 GO:0010181 ... P00175 11914072
    27369 1kbk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    27370 1kbn:A (2.0) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 N/A
    27371 1kbn:B (2.0) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 N/A
    27372 1kbo:A (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27373 1kbo:A (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27374 1kbo:A (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27375 1kbo:A (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27376 1kbo:B (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27377 1kbo:B (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27378 1kbo:B (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27379 1kbo:B (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27380 1kbo:C (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27381 1kbo:C (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27382 1kbo:C (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27383 1kbo:C (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27384 1kbo:D (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27385 1kbo:D (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27386 1kbo:D (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    27387 1kbo:D (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27388 1kbp:A (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    27389 1kbp:A (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    27390 1kbp:B (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    27391 1kbp:B (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    27392 1kbp:C (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    27393 1kbp:C (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    27394 1kbp:D (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    27395 1kbp:D (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    27396 1kbq:A (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27397 1kbq:A (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    27398 1kbq:A (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    27399 1kbq:A (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    27400 1kbq:B (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).