SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    273801 4u4q:l6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    273802 4u4q:l7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    273803 4u4q:l7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    273804 4u4q:l8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    273805 4u4q:l8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    273806 4u4q:l9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    273807 4u4q:l9 (3.0) BS02 OHX ? GO:0002181 ... P05738 25209664
    273808 4u4q:m0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    273809 4u4q:m0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    273810 4u4q:m0 (3.0) BS03 OHX ? GO:0000027 ... P41805 25209664
    273811 4u4q:m0 (3.0) BS04 OHX ? GO:0000027 ... P41805 25209664
    273812 4u4q:m1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    273813 4u4q:m1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    273814 4u4q:m1 (3.0) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    273815 4u4q:m2 (3.0) BS01 rna N/A N/A N/A 25209664
    273816 4u4q:m3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    273817 4u4q:m3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    273818 4u4q:m4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    273819 4u4q:m5 (3.0) BS01 rna ? GO:0000470 ... P05748 25209664
    273820 4u4q:m5 (3.0) BS02 rna ? GO:0000470 ... P05748 25209664
    273821 4u4q:m5 (3.0) BS03 OHX ? GO:0000470 ... P05748 25209664
    273822 4u4q:m6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    273823 4u4q:m6 (3.0) BS02 MG ? GO:0000470 ... P26784 25209664
    273824 4u4q:m7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    273825 4u4q:m7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    273826 4u4q:m7 (3.0) BS03 OHX ? GO:0000448 ... P05740 25209664
    273827 4u4q:m8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    273828 4u4q:m9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    273829 4u4q:m9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    273830 4u4q:n0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    273831 4u4q:n0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    273832 4u4q:n1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    273833 4u4q:n1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    273834 4u4q:n1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    273835 4u4q:n2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    273836 4u4q:n3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    273837 4u4q:n3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    273838 4u4q:n3 (3.0) BS03 MG ? GO:0002181 ... P0CX41 25209664
    273839 4u4q:n4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    273840 4u4q:n4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    273841 4u4q:n5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    273842 4u4q:n5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    273843 4u4q:n6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    273844 4u4q:n6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    273845 4u4q:n6 (3.0) BS03 OHX ? GO:0002181 ... P05743 25209664
    273846 4u4q:n7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    273847 4u4q:n8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    273848 4u4q:n9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    273849 4u4q:n9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    273850 4u4q:o0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    273851 4u4q:o1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    273852 4u4q:o1 (3.0) BS02 MG ? GO:0002181 ... P0C2H8 25209664
    273853 4u4q:o2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    273854 4u4q:o3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    273855 4u4q:o3 (3.0) BS02 MG ? GO:0000027 ... P05744 25209664
    273856 4u4q:o3 (3.0) BS03 OHX ? GO:0000027 ... P05744 25209664
    273857 4u4q:o4 (3.0) BS01 rna ? GO:0002181 ... P87262 25209664
    273858 4u4q:o5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    273859 4u4q:o5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    273860 4u4q:o6 (3.0) BS01 rna ? GO:0000470 ... P05745 25209664
    273861 4u4q:o7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    273862 4u4q:o7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    273863 4u4q:o7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    273864 4u4q:o7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    273865 4u4q:o7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    273866 4u4q:o8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    273867 4u4q:o9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    273868 4u4q:o9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    273869 4u4q:o9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    273870 4u4q:p0 (3.0) BS01 rna ? GO:0000027 ... P05317 25209664
    273871 4u4q:q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    273872 4u4q:q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    273873 4u4q:q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    273874 4u4q:q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    273875 4u4q:q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    273876 4u4q:q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    273877 4u4q:q3 (3.0) BS02 rna ? GO:0002181 ... P0CX25 25209664
    273878 4u4q:q3 (3.0) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    273879 4u4q:s0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    273880 4u4q:s1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    273881 4u4q:s1 (3.0) BS02 OHX ? GO:0000462 ... P33442 25209664
    273882 4u4q:s2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    273883 4u4q:s3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    273884 4u4q:s4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    273885 4u4q:s4 (3.0) BS02 MG ? GO:0002181 ... P0CX35 25209664
    273886 4u4q:s5 (3.0) BS01 rna ? GO:0000054 ... P26783 25209664
    273887 4u4q:s6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    273888 4u4q:s7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    273889 4u4q:s8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    273890 4u4q:s8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    273891 4u4q:s9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    273892 4u4q:s9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    273893 4u4q:sM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    273894 4u4q:sM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    273895 4u4q:sM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    273896 4u4q:sR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    273897 4u4r:C0 (2.801) BS01 rna ? GO:0000054 ... Q08745 25209664
    273898 4u4r:C1 (2.801) BS01 rna ? GO:0000028 ... P0CX47 25209664
    273899 4u4r:C2 (2.801) BS01 rna ? GO:0000028 ... P48589 25209664
    273900 4u4r:C3 (2.801) BS01 rna ? GO:0000462 ... P05756 25209664
    273901 4u4r:C3 (2.801) BS02 rna ? GO:0000462 ... P05756 25209664
    273902 4u4r:C3 (2.801) BS03 OHX ? GO:0000462 ... P05756 25209664
    273903 4u4r:C4 (2.801) BS01 rna ? GO:0000028 ... P06367 25209664
    273904 4u4r:C5 (2.801) BS01 rna ? GO:0000054 ... Q01855 25209664
    273905 4u4r:C5 (2.801) BS02 rna ? GO:0000054 ... Q01855 25209664
    273906 4u4r:C5 (2.801) BS03 OHX ? GO:0000054 ... Q01855 25209664
    273907 4u4r:C6 (2.801) BS01 rna ? GO:0000462 ... P0CX51 25209664
    273908 4u4r:C7 (2.801) BS01 rna ? GO:0000028 ... P02407 25209664
    273909 4u4r:C8 (2.801) BS01 rna ? GO:0000054 ... P0CX55 25209664
    273910 4u4r:C8 (2.801) BS02 MG ? GO:0000054 ... P0CX55 25209664
    273911 4u4r:C8 (2.801) BS03 MG ? GO:0000054 ... P0CX55 25209664
    273912 4u4r:C8 (2.801) BS04 OHX ? GO:0000054 ... P0CX55 25209664
    273913 4u4r:C9 (2.801) BS01 rna ? GO:0000054 ... P07280 25209664
    273914 4u4r:D0 (2.801) BS01 rna ? GO:0000462 ... P38701 25209664
    273915 4u4r:D2 (2.801) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    273916 4u4r:D3 (2.801) BS01 rna ? GO:0000462 ... P0CX29 25209664
    273917 4u4r:D4 (2.801) BS01 rna ? GO:0000462 ... P0CX31 25209664
    273918 4u4r:D5 (2.801) BS01 rna ? GO:0002181 ... Q3E792 25209664
    273919 4u4r:D6 (2.801) BS01 rna ? GO:0003735 ... P39939 25209664
    273920 4u4r:D6 (2.801) BS02 ZN ? GO:0003735 ... P39939 25209664
    273921 4u4r:D7 (2.801) BS01 rna ? GO:0000028 ... P35997 25209664
    273922 4u4r:D8 (2.801) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    273923 4u4r:D9 (2.801) BS01 rna ? GO:0002181 ... P41057 25209664
    273924 4u4r:D9 (2.801) BS02 ZN ? GO:0002181 ... P41057 25209664
    273925 4u4r:D9 (2.801) BS03 OHX ? GO:0002181 ... P41057 25209664
    273926 4u4r:E0 (2.801) BS01 rna ? GO:0002181 ... P0CX33 25209664
    273927 4u4r:E1 (2.801) BS01 rna ? GO:0003735 ... P05759 25209664
    273928 4u4r:E1 (2.801) BS02 ZN ? GO:0003735 ... P05759 25209664
    273929 4u4r:L2 (2.801) BS01 rna ? GO:0002181 ... P0CX45 25209664
    273930 4u4r:L2 (2.801) BS02 rna ? GO:0002181 ... P0CX45 25209664
    273931 4u4r:L2 (2.801) BS03 MG ? GO:0002181 ... P0CX45 25209664
    273932 4u4r:L3 (2.801) BS01 rna ? GO:0000027 ... P14126 25209664
    273933 4u4r:L3 (2.801) BS02 OHX ? GO:0000027 ... P14126 25209664
    273934 4u4r:L3 (2.801) BS03 OHX ? GO:0000027 ... P14126 25209664
    273935 4u4r:L4 (2.801) BS01 rna ? GO:0002181 ... P10664 25209664
    273936 4u4r:L4 (2.801) BS02 rna ? GO:0002181 ... P10664 25209664
    273937 4u4r:L4 (2.801) BS03 OHX ? GO:0002181 ... P10664 25209664
    273938 4u4r:L5 (2.801) BS01 rna ? GO:0000027 ... P26321 25209664
    273939 4u4r:L5 (2.801) BS02 rna ? GO:0000027 ... P26321 25209664
    273940 4u4r:L6 (2.801) BS01 rna ? GO:0000027 ... Q02326 25209664
    273941 4u4r:L7 (2.801) BS01 rna ? GO:0000463 ... P05737 25209664
    273942 4u4r:L7 (2.801) BS02 rna ? GO:0000463 ... P05737 25209664
    273943 4u4r:L7 (2.801) BS03 OHX ? GO:0000463 ... P05737 25209664
    273944 4u4r:L8 (2.801) BS01 rna ? GO:0000470 ... P17076 25209664
    273945 4u4r:L8 (2.801) BS02 rna ? GO:0000470 ... P17076 25209664
    273946 4u4r:L9 (2.801) BS01 rna ? GO:0002181 ... P05738 25209664
    273947 4u4r:M0 (2.801) BS01 rna ? GO:0000027 ... P41805 25209664
    273948 4u4r:M0 (2.801) BS02 rna ? GO:0000027 ... P41805 25209664
    273949 4u4r:M0 (2.801) BS03 MG ? GO:0000027 ... P41805 25209664
    273950 4u4r:M0 (2.801) BS04 OHX ? GO:0000027 ... P41805 25209664
    273951 4u4r:M1 (2.801) BS01 rna ? GO:0000027 ... Q3E757 25209664
    273952 4u4r:M1 (2.801) BS02 rna ? GO:0000027 ... Q3E757 25209664
    273953 4u4r:M3 (2.801) BS01 rna ? GO:0002181 ... Q12690 25209664
    273954 4u4r:M3 (2.801) BS02 rna ? GO:0002181 ... Q12690 25209664
    273955 4u4r:M3 (2.801) BS03 MG ? GO:0002181 ... Q12690 25209664
    273956 4u4r:M4 (2.801) BS01 rna ? GO:0000027 ... P36105 25209664
    273957 4u4r:M5 (2.801) BS01 rna ? GO:0000470 ... P05748 25209664
    273958 4u4r:M5 (2.801) BS02 rna ? GO:0000470 ... P05748 25209664
    273959 4u4r:M5 (2.801) BS03 OHX ? GO:0000470 ... P05748 25209664
    273960 4u4r:M6 (2.801) BS01 rna ? GO:0000470 ... P26784 25209664
    273961 4u4r:M7 (2.801) BS01 rna ? GO:0000448 ... P05740 25209664
    273962 4u4r:M7 (2.801) BS02 rna ? GO:0000448 ... P05740 25209664
    273963 4u4r:M7 (2.801) BS03 MG ? GO:0000448 ... P05740 25209664
    273964 4u4r:M7 (2.801) BS04 OHX ? GO:0000448 ... P05740 25209664
    273965 4u4r:M8 (2.801) BS01 rna ? GO:0002181 ... P0CX49 25209664
    273966 4u4r:M9 (2.801) BS01 rna ? GO:0002181 ... P0CX82 25209664
    273967 4u4r:M9 (2.801) BS02 rna ? GO:0002181 ... P0CX82 25209664
    273968 4u4r:M9 (2.801) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    273969 4u4r:N0 (2.801) BS01 rna ? GO:0002181 ... P0CX23 25209664
    273970 4u4r:N0 (2.801) BS02 rna ? GO:0002181 ... P0CX23 25209664
    273971 4u4r:N1 (2.801) BS01 rna ? GO:0002181 ... Q02753 25209664
    273972 4u4r:N1 (2.801) BS02 rna ? GO:0002181 ... Q02753 25209664
    273973 4u4r:N1 (2.801) BS03 OHX ? GO:0002181 ... Q02753 25209664
    273974 4u4r:N2 (2.801) BS01 rna ? GO:0002181 ... P05749 25209664
    273975 4u4r:N3 (2.801) BS01 rna ? GO:0002181 ... P0CX41 25209664
    273976 4u4r:N3 (2.801) BS02 rna ? GO:0002181 ... P0CX41 25209664
    273977 4u4r:N4 (2.801) BS01 rna ? GO:0002181 ... P04449 25209664
    273978 4u4r:N4 (2.801) BS02 rna ? GO:0002181 ... P04449 25209664
    273979 4u4r:N5 (2.801) BS01 rna ? GO:0000027 ... P04456 25209664
    273980 4u4r:N5 (2.801) BS02 rna ? GO:0000027 ... P04456 25209664
    273981 4u4r:N6 (2.801) BS01 rna ? GO:0002181 ... P05743 25209664
    273982 4u4r:N6 (2.801) BS02 rna ? GO:0002181 ... P05743 25209664
    273983 4u4r:N7 (2.801) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    273984 4u4r:N8 (2.801) BS01 rna ? GO:0002181 ... P02406 25209664
    273985 4u4r:N8 (2.801) BS02 MG ? GO:0002181 ... P02406 25209664
    273986 4u4r:N8 (2.801) BS03 MG ? GO:0002181 ... P02406 25209664
    273987 4u4r:N9 (2.801) BS01 rna ? GO:0002181 ... P05747 25209664
    273988 4u4r:N9 (2.801) BS02 OHX ? GO:0002181 ... P05747 25209664
    273989 4u4r:O0 (2.801) BS01 rna ? GO:0002181 ... P14120 25209664
    273990 4u4r:O1 (2.801) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    273991 4u4r:O2 (2.801) BS01 rna ? GO:0002181 ... P38061 25209664
    273992 4u4r:O3 (2.801) BS01 rna ? GO:0000027 ... P05744 25209664
    273993 4u4r:O3 (2.801) BS02 OHX ? GO:0000027 ... P05744 25209664
    273994 4u4r:O4 (2.801) BS01 rna ? GO:0002181 ... P87262 25209664
    273995 4u4r:O5 (2.801) BS01 rna ? GO:0000463 ... P0CX84 25209664
    273996 4u4r:O5 (2.801) BS02 rna ? GO:0000463 ... P0CX84 25209664
    273997 4u4r:O6 (2.801) BS01 rna ? GO:0000470 ... P05745 25209664
    273998 4u4r:O7 (2.801) BS01 rna ? GO:0000448 ... P49166 25209664
    273999 4u4r:O7 (2.801) BS02 rna ? GO:0000448 ... P49166 25209664
    274000 4u4r:O7 (2.801) BS03 OHX ? GO:0000448 ... P49166 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).