SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    274801 4u4z:N5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    274802 4u4z:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    274803 4u4z:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    274804 4u4z:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    274805 4u4z:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    274806 4u4z:N8 (3.1) BS02 MG ? GO:0002181 ... P02406 25209664
    274807 4u4z:N8 (3.1) BS03 MG ? GO:0002181 ... P02406 25209664
    274808 4u4z:N8 (3.1) BS04 MG ? GO:0002181 ... P02406 25209664
    274809 4u4z:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    274810 4u4z:N9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    274811 4u4z:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    274812 4u4z:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    274813 4u4z:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    274814 4u4z:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    274815 4u4z:O3 (3.1) BS02 OHX ? GO:0000027 ... P05744 25209664
    274816 4u4z:O4 (3.1) BS01 rna ? GO:0003735 ... P87262 25209664
    274817 4u4z:O4 (3.1) BS02 MG ? GO:0003735 ... P87262 25209664
    274818 4u4z:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    274819 4u4z:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    274820 4u4z:O6 (3.1) BS01 rna ? GO:0000470 ... P05745 25209664
    274821 4u4z:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    274822 4u4z:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    274823 4u4z:O7 (3.1) BS03 OHX ? GO:0000448 ... P49166 25209664
    274824 4u4z:O7 (3.1) BS04 ZN ? GO:0000448 ... P49166 25209664
    274825 4u4z:O7 (3.1) BS05 OHX ? GO:0000448 ... P49166 25209664
    274826 4u4z:O7 (3.1) BS06 OHX ? GO:0000448 ... P49166 25209664
    274827 4u4z:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    274828 4u4z:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    274829 4u4z:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    274830 4u4z:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    274831 4u4z:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    274832 4u4z:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    274833 4u4z:Q2 (3.1) BS02 3K5 ? GO:0002181 ... P0CX27 25209664
    274834 4u4z:Q2 (3.1) BS03 ZN ? GO:0002181 ... P0CX27 25209664
    274835 4u4z:Q2 (3.1) BS04 OHX ? GO:0002181 ... P0CX27 25209664
    274836 4u4z:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    274837 4u4z:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    274838 4u4z:S0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    274839 4u4z:S1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    274840 4u4z:S2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    274841 4u4z:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    274842 4u4z:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    274843 4u4z:S5 (3.1) BS01 rna ? GO:0000054 ... P26783 25209664
    274844 4u4z:S6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 25209664
    274845 4u4z:S7 (3.1) BS01 rna ? GO:0002181 ... P26786 25209664
    274846 4u4z:S8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 25209664
    274847 4u4z:S8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 25209664
    274848 4u4z:S8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    274849 4u4z:S9 (3.1) BS01 rna ? GO:0000462 ... O13516 25209664
    274850 4u4z:S9 (3.1) BS02 OHX ? GO:0000462 ... O13516 25209664
    274851 4u4z:SM (3.1) BS01 rna ? GO:0000723 ... P39015 25209664
    274852 4u4z:SM (3.1) BS02 rna ? GO:0000723 ... P39015 25209664
    274853 4u4z:SM (3.1) BS03 MG ? GO:0000723 ... P39015 25209664
    274854 4u4z:SR (3.1) BS01 rna ? GO:0001965 ... P38011 25209664
    274855 4u4z:SR (3.1) BS02 OHX ? GO:0001965 ... P38011 25209664
    274856 4u4z:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 25209664
    274857 4u4z:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 25209664
    274858 4u4z:c2 (3.1) BS01 rna ? GO:0000028 ... P48589 25209664
    274859 4u4z:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 25209664
    274860 4u4z:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 25209664
    274861 4u4z:c3 (3.1) BS03 OHX ? GO:0000462 ... P05756 25209664
    274862 4u4z:c4 (3.1) BS01 rna ? GO:0000028 ... P06367 25209664
    274863 4u4z:c5 (3.1) BS01 rna ? GO:0000054 ... Q01855 25209664
    274864 4u4z:c5 (3.1) BS02 OHX ? GO:0000054 ... Q01855 25209664
    274865 4u4z:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 25209664
    274866 4u4z:c7 (3.1) BS01 rna ? GO:0000028 ... P02407 25209664
    274867 4u4z:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 25209664
    274868 4u4z:c9 (3.1) BS01 rna ? GO:0000054 ... P07280 25209664
    274869 4u4z:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 25209664
    274870 4u4z:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    274871 4u4z:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 25209664
    274872 4u4z:d3 (3.1) BS02 MG ? GO:0000462 ... P0CX29 25209664
    274873 4u4z:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 25209664
    274874 4u4z:d5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 25209664
    274875 4u4z:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 25209664
    274876 4u4z:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 25209664
    274877 4u4z:d6 (3.1) BS03 MG ? GO:0003735 ... P39939 25209664
    274878 4u4z:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 25209664
    274879 4u4z:d7 (3.1) BS02 ZN ? GO:0000028 ... P35997 25209664
    274880 4u4z:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    274881 4u4z:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 25209664
    274882 4u4z:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 25209664
    274883 4u4z:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 25209664
    274884 4u4z:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 25209664
    274885 4u4z:e1 (3.1) BS02 ZN ? GO:0003735 ... P05759 25209664
    274886 4u4z:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 25209664
    274887 4u4z:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 25209664
    274888 4u4z:l2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 25209664
    274889 4u4z:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 25209664
    274890 4u4z:l3 (3.1) BS02 MG ? GO:0000027 ... P14126 25209664
    274891 4u4z:l3 (3.1) BS03 MG ? GO:0000027 ... P14126 25209664
    274892 4u4z:l3 (3.1) BS04 OHX ? GO:0000027 ... P14126 25209664
    274893 4u4z:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 25209664
    274894 4u4z:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 25209664
    274895 4u4z:l4 (3.1) BS03 OHX ? GO:0002181 ... P10664 25209664
    274896 4u4z:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 25209664
    274897 4u4z:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 25209664
    274898 4u4z:l5 (3.1) BS03 OHX ? GO:0000027 ... P26321 25209664
    274899 4u4z:l5 (3.1) BS04 OHX ? GO:0000027 ... P26321 25209664
    274900 4u4z:l5 (3.1) BS05 OHX ? GO:0000027 ... P26321 25209664
    274901 4u4z:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 25209664
    274902 4u4z:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 25209664
    274903 4u4z:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 25209664
    274904 4u4z:l8 (3.1) BS01 rna ? GO:0000470 ... P17076 25209664
    274905 4u4z:l8 (3.1) BS02 rna ? GO:0000470 ... P17076 25209664
    274906 4u4z:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 25209664
    274907 4u4z:l9 (3.1) BS02 OHX ? GO:0002181 ... P05738 25209664
    274908 4u4z:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 25209664
    274909 4u4z:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 25209664
    274910 4u4z:m0 (3.1) BS03 OHX ? GO:0000027 ... P41805 25209664
    274911 4u4z:m0 (3.1) BS04 OHX ? GO:0000027 ... P41805 25209664
    274912 4u4z:m1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 25209664
    274913 4u4z:m1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 25209664
    274914 4u4z:m1 (3.1) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    274915 4u4z:m2 (3.1) BS01 rna N/A N/A N/A 25209664
    274916 4u4z:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 25209664
    274917 4u4z:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 25209664
    274918 4u4z:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 25209664
    274919 4u4z:m5 (3.1) BS01 rna ? GO:0000470 ... P05748 25209664
    274920 4u4z:m5 (3.1) BS02 rna ? GO:0000470 ... P05748 25209664
    274921 4u4z:m5 (3.1) BS03 OHX ? GO:0000470 ... P05748 25209664
    274922 4u4z:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 25209664
    274923 4u4z:m6 (3.1) BS02 MG ? GO:0000470 ... P26784 25209664
    274924 4u4z:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 25209664
    274925 4u4z:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 25209664
    274926 4u4z:m7 (3.1) BS03 OHX ? GO:0000448 ... P05740 25209664
    274927 4u4z:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 25209664
    274928 4u4z:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 25209664
    274929 4u4z:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 25209664
    274930 4u4z:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 25209664
    274931 4u4z:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 25209664
    274932 4u4z:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 25209664
    274933 4u4z:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 25209664
    274934 4u4z:n1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 25209664
    274935 4u4z:n2 (3.1) BS01 rna ? GO:0002181 ... P05749 25209664
    274936 4u4z:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 25209664
    274937 4u4z:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 25209664
    274938 4u4z:n3 (3.1) BS03 MG ? GO:0002181 ... P0CX41 25209664
    274939 4u4z:n3 (3.1) BS04 OHX ? GO:0002181 ... P0CX41 25209664
    274940 4u4z:n4 (3.1) BS01 rna ? GO:0002181 ... P04449 25209664
    274941 4u4z:n4 (3.1) BS02 rna ? GO:0002181 ... P04449 25209664
    274942 4u4z:n5 (3.1) BS01 rna ? GO:0000027 ... P04456 25209664
    274943 4u4z:n5 (3.1) BS02 rna ? GO:0000027 ... P04456 25209664
    274944 4u4z:n6 (3.1) BS01 rna ? GO:0002181 ... P05743 25209664
    274945 4u4z:n6 (3.1) BS02 rna ? GO:0002181 ... P05743 25209664
    274946 4u4z:n6 (3.1) BS03 OHX ? GO:0002181 ... P05743 25209664
    274947 4u4z:n7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    274948 4u4z:n8 (3.1) BS01 rna ? GO:0002181 ... P02406 25209664
    274949 4u4z:n8 (3.1) BS02 OHX ? GO:0002181 ... P02406 25209664
    274950 4u4z:n9 (3.1) BS01 rna ? GO:0002181 ... P05747 25209664
    274951 4u4z:n9 (3.1) BS02 OHX ? GO:0002181 ... P05747 25209664
    274952 4u4z:o0 (3.1) BS01 rna ? GO:0002181 ... P14120 25209664
    274953 4u4z:o1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    274954 4u4z:o2 (3.1) BS01 rna ? GO:0002181 ... P38061 25209664
    274955 4u4z:o3 (3.1) BS01 rna ? GO:0000027 ... P05744 25209664
    274956 4u4z:o3 (3.1) BS02 MG ? GO:0000027 ... P05744 25209664
    274957 4u4z:o3 (3.1) BS03 OHX ? GO:0000027 ... P05744 25209664
    274958 4u4z:o4 (3.1) BS01 rna ? GO:0003735 ... P87262 25209664
    274959 4u4z:o4 (3.1) BS02 MG ? GO:0003735 ... P87262 25209664
    274960 4u4z:o5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 25209664
    274961 4u4z:o5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 25209664
    274962 4u4z:o6 (3.1) BS01 rna ? GO:0000470 ... P05745 25209664
    274963 4u4z:o7 (3.1) BS01 rna ? GO:0000448 ... P49166 25209664
    274964 4u4z:o7 (3.1) BS02 rna ? GO:0000448 ... P49166 25209664
    274965 4u4z:o7 (3.1) BS03 ZN ? GO:0000448 ... P49166 25209664
    274966 4u4z:o7 (3.1) BS04 OHX ? GO:0000448 ... P49166 25209664
    274967 4u4z:o8 (3.1) BS01 rna ? GO:0002181 ... P49167 25209664
    274968 4u4z:o9 (3.1) BS01 rna ? GO:0002181 ... P04650 25209664
    274969 4u4z:o9 (3.1) BS02 rna ? GO:0002181 ... P04650 25209664
    274970 4u4z:p0 (3.1) BS01 rna ? GO:0000027 ... P05317 25209664
    274971 4u4z:q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 25209664
    274972 4u4z:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    274973 4u4z:q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 25209664
    274974 4u4z:q2 (3.1) BS02 3K5 ? GO:0002181 ... P0CX27 25209664
    274975 4u4z:q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    274976 4u4z:q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 25209664
    274977 4u4z:q3 (3.1) BS02 rna ? GO:0002181 ... P0CX25 25209664
    274978 4u4z:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    274979 4u4z:s0 (3.1) BS01 rna ? GO:0000028 ... P32905 25209664
    274980 4u4z:s1 (3.1) BS01 rna ? GO:0000462 ... P33442 25209664
    274981 4u4z:s1 (3.1) BS02 OHX ? GO:0000462 ... P33442 25209664
    274982 4u4z:s1 (3.1) BS03 OHX ? GO:0000462 ... P33442 25209664
    274983 4u4z:s2 (3.1) BS01 rna ? GO:0000054 ... P25443 25209664
    274984 4u4z:s3 (3.1) BS01 rna ? GO:0000054 ... P05750 25209664
    274985 4u4z:s4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 25209664
    274986 4u4z:s4 (3.1) BS02 MG ? GO:0002181 ... P0CX35 25209664
    274987 4u4z:s5 (3.1) BS01 rna ? GO:0000054 ... P26783 25209664
    274988 4u4z:s6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 25209664
    274989 4u4z:s7 (3.1) BS01 rna ? GO:0002181 ... P26786 25209664
    274990 4u4z:s8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 25209664
    274991 4u4z:s8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 25209664
    274992 4u4z:s9 (3.1) BS01 rna ? GO:0000462 ... O13516 25209664
    274993 4u4z:sM (3.1) BS01 rna ? GO:0000723 ... P39015 25209664
    274994 4u4z:sM (3.1) BS02 rna ? GO:0000723 ... P39015 25209664
    274995 4u4z:sM (3.1) BS03 MG ? GO:0000723 ... P39015 25209664
    274996 4u4z:sR (3.1) BS01 rna ? GO:0001965 ... P38011 25209664
    274997 4u4z:sR (3.1) BS02 OHX ? GO:0001965 ... P38011 25209664
    274998 4u50:C0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    274999 4u50:C1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    275000 4u50:C2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).