SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    275601 4u52:M7 (3.0) BS04 OHX ? GO:0000448 ... P05740 25209664
    275602 4u52:M7 (3.0) BS05 OHX ? GO:0000448 ... P05740 25209664
    275603 4u52:M8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    275604 4u52:M8 (3.0) BS02 OHX ? GO:0002181 ... P0CX49 25209664
    275605 4u52:M9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    275606 4u52:M9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    275607 4u52:M9 (3.0) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    275608 4u52:N0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    275609 4u52:N0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    275610 4u52:N1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    275611 4u52:N1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    275612 4u52:N1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    275613 4u52:N2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    275614 4u52:N3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    275615 4u52:N3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    275616 4u52:N4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    275617 4u52:N4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    275618 4u52:N5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    275619 4u52:N5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    275620 4u52:N6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    275621 4u52:N6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    275622 4u52:N7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    275623 4u52:N8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    275624 4u52:N8 (3.0) BS02 MG ? GO:0002181 ... P02406 25209664
    275625 4u52:N8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    275626 4u52:N8 (3.0) BS04 MG ? GO:0002181 ... P02406 25209664
    275627 4u52:N9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    275628 4u52:N9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    275629 4u52:O0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    275630 4u52:O1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    275631 4u52:O2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    275632 4u52:O3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    275633 4u52:O3 (3.0) BS02 OHX ? GO:0000027 ... P05744 25209664
    275634 4u52:O4 (3.0) BS01 rna ? GO:0003735 ... P87262 25209664
    275635 4u52:O5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    275636 4u52:O5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    275637 4u52:O6 (3.0) BS01 rna ? GO:0000470 ... P05745 25209664
    275638 4u52:O7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    275639 4u52:O7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    275640 4u52:O7 (3.0) BS03 OHX ? GO:0000448 ... P49166 25209664
    275641 4u52:O7 (3.0) BS04 ZN ? GO:0000448 ... P49166 25209664
    275642 4u52:O7 (3.0) BS05 OHX ? GO:0000448 ... P49166 25209664
    275643 4u52:O7 (3.0) BS06 OHX ? GO:0000448 ... P49166 25209664
    275644 4u52:O8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    275645 4u52:O9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    275646 4u52:O9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    275647 4u52:O9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    275648 4u52:Q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    275649 4u52:Q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    275650 4u52:Q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    275651 4u52:Q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    275652 4u52:Q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    275653 4u52:Q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    275654 4u52:Q3 (3.0) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    275655 4u52:S0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    275656 4u52:S1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    275657 4u52:S2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664
    275658 4u52:S3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    275659 4u52:S4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    275660 4u52:S5 (3.0) BS01 rna ? GO:0000054 ... P26783 25209664
    275661 4u52:S6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    275662 4u52:S7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    275663 4u52:S8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    275664 4u52:S8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    275665 4u52:S9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    275666 4u52:S9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    275667 4u52:SM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    275668 4u52:SM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    275669 4u52:SM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    275670 4u52:SR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    275671 4u52:SR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    275672 4u52:c0 (3.0) BS01 rna ? GO:0000054 ... Q08745 25209664
    275673 4u52:c1 (3.0) BS01 rna ? GO:0000028 ... P0CX47 25209664
    275674 4u52:c2 (3.0) BS01 rna ? GO:0000028 ... P48589 25209664
    275675 4u52:c3 (3.0) BS01 rna ? GO:0000462 ... P05756 25209664
    275676 4u52:c3 (3.0) BS02 rna ? GO:0000462 ... P05756 25209664
    275677 4u52:c3 (3.0) BS03 OHX ? GO:0000462 ... P05756 25209664
    275678 4u52:c4 (3.0) BS01 rna ? GO:0000028 ... P06367 25209664
    275679 4u52:c5 (3.0) BS01 rna ? GO:0000054 ... Q01855 25209664
    275680 4u52:c5 (3.0) BS02 OHX ? GO:0000054 ... Q01855 25209664
    275681 4u52:c6 (3.0) BS01 rna ? GO:0000462 ... P0CX51 25209664
    275682 4u52:c7 (3.0) BS01 rna ? GO:0000028 ... P02407 25209664
    275683 4u52:c8 (3.0) BS01 rna ? GO:0000054 ... P0CX55 25209664
    275684 4u52:c9 (3.0) BS01 rna ? GO:0000054 ... P07280 25209664
    275685 4u52:c9 (3.0) BS02 MG ? GO:0000054 ... P07280 25209664
    275686 4u52:d0 (3.0) BS01 rna ? GO:0000462 ... P38701 25209664
    275687 4u52:d2 (3.0) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    275688 4u52:d3 (3.0) BS01 rna ? GO:0000462 ... P0CX29 25209664
    275689 4u52:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 25209664
    275690 4u52:d4 (3.0) BS01 rna ? GO:0000462 ... P0CX31 25209664
    275691 4u52:d5 (3.0) BS01 rna ? GO:0002181 ... Q3E792 25209664
    275692 4u52:d6 (3.0) BS01 rna ? GO:0003735 ... P39939 25209664
    275693 4u52:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 25209664
    275694 4u52:d7 (3.0) BS01 rna ? GO:0000028 ... P35997 25209664
    275695 4u52:d7 (3.0) BS02 ZN ? GO:0000028 ... P35997 25209664
    275696 4u52:d8 (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    275697 4u52:d9 (3.0) BS01 rna ? GO:0002181 ... P41057 25209664
    275698 4u52:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 25209664
    275699 4u52:d9 (3.0) BS03 OHX ? GO:0002181 ... P41057 25209664
    275700 4u52:e0 (3.0) BS01 rna ? GO:0002181 ... P0CX33 25209664
    275701 4u52:e1 (3.0) BS01 rna ? GO:0003735 ... P05759 25209664
    275702 4u52:l2 (3.0) BS01 rna ? GO:0002181 ... P0CX45 25209664
    275703 4u52:l2 (3.0) BS02 rna ? GO:0002181 ... P0CX45 25209664
    275704 4u52:l3 (3.0) BS01 rna ? GO:0000027 ... P14126 25209664
    275705 4u52:l3 (3.0) BS02 OHX ? GO:0000027 ... P14126 25209664
    275706 4u52:l4 (3.0) BS01 rna ? GO:0002181 ... P10664 25209664
    275707 4u52:l4 (3.0) BS02 rna ? GO:0002181 ... P10664 25209664
    275708 4u52:l4 (3.0) BS03 OHX ? GO:0002181 ... P10664 25209664
    275709 4u52:l4 (3.0) BS04 OHX ? GO:0002181 ... P10664 25209664
    275710 4u52:l5 (3.0) BS01 rna ? GO:0000027 ... P26321 25209664
    275711 4u52:l5 (3.0) BS02 rna ? GO:0000027 ... P26321 25209664
    275712 4u52:l5 (3.0) BS03 OHX ? GO:0000027 ... P26321 25209664
    275713 4u52:l5 (3.0) BS04 OHX ? GO:0000027 ... P26321 25209664
    275714 4u52:l6 (3.0) BS01 rna ? GO:0000027 ... Q02326 25209664
    275715 4u52:l7 (3.0) BS01 rna ? GO:0000463 ... P05737 25209664
    275716 4u52:l7 (3.0) BS02 rna ? GO:0000463 ... P05737 25209664
    275717 4u52:l7 (3.0) BS03 OHX ? GO:0000463 ... P05737 25209664
    275718 4u52:l8 (3.0) BS01 rna ? GO:0000470 ... P17076 25209664
    275719 4u52:l8 (3.0) BS02 rna ? GO:0000470 ... P17076 25209664
    275720 4u52:l9 (3.0) BS01 rna ? GO:0002181 ... P05738 25209664
    275721 4u52:l9 (3.0) BS02 OHX ? GO:0002181 ... P05738 25209664
    275722 4u52:m0 (3.0) BS01 rna ? GO:0000027 ... P41805 25209664
    275723 4u52:m0 (3.0) BS02 rna ? GO:0000027 ... P41805 25209664
    275724 4u52:m0 (3.0) BS03 OHX ? GO:0000027 ... P41805 25209664
    275725 4u52:m0 (3.0) BS04 OHX ? GO:0000027 ... P41805 25209664
    275726 4u52:m1 (3.0) BS01 rna ? GO:0000027 ... Q3E757 25209664
    275727 4u52:m1 (3.0) BS02 rna ? GO:0000027 ... Q3E757 25209664
    275728 4u52:m1 (3.0) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    275729 4u52:m2 (3.0) BS01 rna N/A N/A N/A 25209664
    275730 4u52:m3 (3.0) BS01 rna ? GO:0002181 ... Q12690 25209664
    275731 4u52:m3 (3.0) BS02 rna ? GO:0002181 ... Q12690 25209664
    275732 4u52:m4 (3.0) BS01 rna ? GO:0000027 ... P36105 25209664
    275733 4u52:m5 (3.0) BS01 rna ? GO:0000470 ... P05748 25209664
    275734 4u52:m5 (3.0) BS02 rna ? GO:0000470 ... P05748 25209664
    275735 4u52:m5 (3.0) BS03 OHX ? GO:0000470 ... P05748 25209664
    275736 4u52:m5 (3.0) BS04 MG ? GO:0000470 ... P05748 25209664
    275737 4u52:m6 (3.0) BS01 rna ? GO:0000470 ... P26784 25209664
    275738 4u52:m6 (3.0) BS02 MG ? GO:0000470 ... P26784 25209664
    275739 4u52:m7 (3.0) BS01 rna ? GO:0000448 ... P05740 25209664
    275740 4u52:m7 (3.0) BS02 rna ? GO:0000448 ... P05740 25209664
    275741 4u52:m7 (3.0) BS03 OHX ? GO:0000448 ... P05740 25209664
    275742 4u52:m8 (3.0) BS01 rna ? GO:0002181 ... P0CX49 25209664
    275743 4u52:m9 (3.0) BS01 rna ? GO:0002181 ... P0CX82 25209664
    275744 4u52:m9 (3.0) BS02 rna ? GO:0002181 ... P0CX82 25209664
    275745 4u52:n0 (3.0) BS01 rna ? GO:0002181 ... P0CX23 25209664
    275746 4u52:n0 (3.0) BS02 rna ? GO:0002181 ... P0CX23 25209664
    275747 4u52:n1 (3.0) BS01 rna ? GO:0002181 ... Q02753 25209664
    275748 4u52:n1 (3.0) BS02 rna ? GO:0002181 ... Q02753 25209664
    275749 4u52:n1 (3.0) BS03 OHX ? GO:0002181 ... Q02753 25209664
    275750 4u52:n2 (3.0) BS01 rna ? GO:0002181 ... P05749 25209664
    275751 4u52:n3 (3.0) BS01 rna ? GO:0002181 ... P0CX41 25209664
    275752 4u52:n3 (3.0) BS02 rna ? GO:0002181 ... P0CX41 25209664
    275753 4u52:n3 (3.0) BS03 OHX ? GO:0002181 ... P0CX41 25209664
    275754 4u52:n4 (3.0) BS01 rna ? GO:0002181 ... P04449 25209664
    275755 4u52:n4 (3.0) BS02 rna ? GO:0002181 ... P04449 25209664
    275756 4u52:n5 (3.0) BS01 rna ? GO:0000027 ... P04456 25209664
    275757 4u52:n5 (3.0) BS02 rna ? GO:0000027 ... P04456 25209664
    275758 4u52:n6 (3.0) BS01 rna ? GO:0002181 ... P05743 25209664
    275759 4u52:n6 (3.0) BS02 rna ? GO:0002181 ... P05743 25209664
    275760 4u52:n6 (3.0) BS03 OHX ? GO:0002181 ... P05743 25209664
    275761 4u52:n7 (3.0) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    275762 4u52:n8 (3.0) BS01 rna ? GO:0002181 ... P02406 25209664
    275763 4u52:n8 (3.0) BS02 OHX ? GO:0002181 ... P02406 25209664
    275764 4u52:n8 (3.0) BS03 MG ? GO:0002181 ... P02406 25209664
    275765 4u52:n9 (3.0) BS01 rna ? GO:0002181 ... P05747 25209664
    275766 4u52:n9 (3.0) BS02 OHX ? GO:0002181 ... P05747 25209664
    275767 4u52:o0 (3.0) BS01 rna ? GO:0002181 ... P14120 25209664
    275768 4u52:o1 (3.0) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    275769 4u52:o2 (3.0) BS01 rna ? GO:0002181 ... P38061 25209664
    275770 4u52:o3 (3.0) BS01 rna ? GO:0000027 ... P05744 25209664
    275771 4u52:o3 (3.0) BS02 MG ? GO:0000027 ... P05744 25209664
    275772 4u52:o3 (3.0) BS03 OHX ? GO:0000027 ... P05744 25209664
    275773 4u52:o4 (3.0) BS01 rna ? GO:0003735 ... P87262 25209664
    275774 4u52:o4 (3.0) BS02 MG ? GO:0003735 ... P87262 25209664
    275775 4u52:o5 (3.0) BS01 rna ? GO:0000463 ... P0CX84 25209664
    275776 4u52:o5 (3.0) BS02 rna ? GO:0000463 ... P0CX84 25209664
    275777 4u52:o6 (3.0) BS01 rna ? GO:0000470 ... P05745 25209664
    275778 4u52:o7 (3.0) BS01 rna ? GO:0000448 ... P49166 25209664
    275779 4u52:o7 (3.0) BS02 rna ? GO:0000448 ... P49166 25209664
    275780 4u52:o7 (3.0) BS03 ZN ? GO:0000448 ... P49166 25209664
    275781 4u52:o7 (3.0) BS04 OHX ? GO:0000448 ... P49166 25209664
    275782 4u52:o8 (3.0) BS01 rna ? GO:0002181 ... P49167 25209664
    275783 4u52:o9 (3.0) BS01 rna ? GO:0002181 ... P04650 25209664
    275784 4u52:o9 (3.0) BS02 rna ? GO:0002181 ... P04650 25209664
    275785 4u52:o9 (3.0) BS03 OHX ? GO:0002181 ... P04650 25209664
    275786 4u52:p0 (3.0) BS01 rna ? GO:0000027 ... P05317 25209664
    275787 4u52:q0 (3.0) BS01 rna ? GO:0003735 ... P0CH08 25209664
    275788 4u52:q0 (3.0) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    275789 4u52:q2 (3.0) BS01 rna ? GO:0002181 ... P0CX27 25209664
    275790 4u52:q2 (3.0) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    275791 4u52:q2 (3.0) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    275792 4u52:q3 (3.0) BS01 rna ? GO:0002181 ... P0CX25 25209664
    275793 4u52:q3 (3.0) BS02 rna ? GO:0002181 ... P0CX25 25209664
    275794 4u52:q3 (3.0) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    275795 4u52:s0 (3.0) BS01 rna ? GO:0000028 ... P32905 25209664
    275796 4u52:s1 (3.0) BS01 rna ? GO:0000462 ... P33442 25209664
    275797 4u52:s1 (3.0) BS02 rna ? GO:0000462 ... P33442 25209664
    275798 4u52:s1 (3.0) BS03 OHX ? GO:0000462 ... P33442 25209664
    275799 4u52:s1 (3.0) BS04 OHX ? GO:0000462 ... P33442 25209664
    275800 4u52:s2 (3.0) BS01 rna ? GO:0000054 ... P25443 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).