SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    275801 4u52:s3 (3.0) BS01 rna ? GO:0000054 ... P05750 25209664
    275802 4u52:s4 (3.0) BS01 rna ? GO:0002181 ... P0CX35 25209664
    275803 4u52:s4 (3.0) BS02 MG ? GO:0002181 ... P0CX35 25209664
    275804 4u52:s5 (3.0) BS01 rna ? GO:0000054 ... P26783 25209664
    275805 4u52:s6 (3.0) BS01 rna ? GO:0000462 ... P0CX37 25209664
    275806 4u52:s7 (3.0) BS01 rna ? GO:0002181 ... P26786 25209664
    275807 4u52:s8 (3.0) BS01 rna ? GO:0000462 ... P0CX39 25209664
    275808 4u52:s8 (3.0) BS02 rna ? GO:0000462 ... P0CX39 25209664
    275809 4u52:s9 (3.0) BS01 rna ? GO:0000462 ... O13516 25209664
    275810 4u52:s9 (3.0) BS02 OHX ? GO:0000462 ... O13516 25209664
    275811 4u52:sM (3.0) BS01 rna ? GO:0000723 ... P39015 25209664
    275812 4u52:sM (3.0) BS02 rna ? GO:0000723 ... P39015 25209664
    275813 4u52:sM (3.0) BS03 MG ? GO:0000723 ... P39015 25209664
    275814 4u52:sR (3.0) BS01 rna ? GO:0001965 ... P38011 25209664
    275815 4u52:sR (3.0) BS02 OHX ? GO:0001965 ... P38011 25209664
    275816 4u53:C0 (3.3) BS01 rna ? GO:0000054 ... Q08745 25209664
    275817 4u53:C1 (3.3) BS01 rna ? GO:0000028 ... P0CX47 25209664
    275818 4u53:C2 (3.3) BS01 rna ? GO:0000028 ... P48589 25209664
    275819 4u53:C3 (3.3) BS01 rna ? GO:0000462 ... P05756 25209664
    275820 4u53:C3 (3.3) BS02 rna ? GO:0000462 ... P05756 25209664
    275821 4u53:C3 (3.3) BS03 OHX ? GO:0000462 ... P05756 25209664
    275822 4u53:C4 (3.3) BS01 rna ? GO:0000028 ... P06367 25209664
    275823 4u53:C5 (3.3) BS01 rna ? GO:0000054 ... Q01855 25209664
    275824 4u53:C5 (3.3) BS02 rna ? GO:0000054 ... Q01855 25209664
    275825 4u53:C5 (3.3) BS03 OHX ? GO:0000054 ... Q01855 25209664
    275826 4u53:C6 (3.3) BS01 rna ? GO:0000462 ... P0CX51 25209664
    275827 4u53:C7 (3.3) BS01 rna ? GO:0000028 ... P02407 25209664
    275828 4u53:C8 (3.3) BS01 rna ? GO:0000054 ... P0CX55 25209664
    275829 4u53:C8 (3.3) BS02 MG ? GO:0000054 ... P0CX55 25209664
    275830 4u53:C9 (3.3) BS01 rna ? GO:0000054 ... P07280 25209664
    275831 4u53:D0 (3.3) BS01 rna ? GO:0000462 ... P38701 25209664
    275832 4u53:D1 (3.3) BS01 rna ? GO:0000447 ... P0C0V8 25209664
    275833 4u53:D2 (3.3) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    275834 4u53:D3 (3.3) BS01 rna ? GO:0000462 ... P0CX29 25209664
    275835 4u53:D4 (3.3) BS01 rna ? GO:0000462 ... P0CX31 25209664
    275836 4u53:D5 (3.3) BS01 rna ? GO:0002181 ... Q3E792 25209664
    275837 4u53:D6 (3.3) BS01 rna ? GO:0003735 ... P39939 25209664
    275838 4u53:D6 (3.3) BS02 ZN ? GO:0003735 ... P39939 25209664
    275839 4u53:D7 (3.3) BS01 rna ? GO:0000028 ... P35997 25209664
    275840 4u53:D8 (3.3) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    275841 4u53:D9 (3.3) BS01 rna ? GO:0002181 ... P41057 25209664
    275842 4u53:D9 (3.3) BS02 ZN ? GO:0002181 ... P41057 25209664
    275843 4u53:D9 (3.3) BS03 OHX ? GO:0002181 ... P41057 25209664
    275844 4u53:E0 (3.3) BS01 rna ? GO:0002181 ... P0CX33 25209664
    275845 4u53:E1 (3.3) BS01 rna ? GO:0003735 ... P05759 25209664
    275846 4u53:E1 (3.3) BS02 ZN ? GO:0003735 ... P05759 25209664
    275847 4u53:L2 (3.3) BS01 rna ? GO:0002181 ... P0CX45 25209664
    275848 4u53:L2 (3.3) BS02 rna ? GO:0002181 ... P0CX45 25209664
    275849 4u53:L2 (3.3) BS03 MG ? GO:0002181 ... P0CX45 25209664
    275850 4u53:L2 (3.3) BS04 MG ? GO:0002181 ... P0CX45 25209664
    275851 4u53:L3 (3.3) BS01 rna ? GO:0000027 ... P14126 25209664
    275852 4u53:L3 (3.3) BS02 OHX ? GO:0000027 ... P14126 25209664
    275853 4u53:L3 (3.3) BS03 MG ? GO:0000027 ... P14126 25209664
    275854 4u53:L3 (3.3) BS04 OHX ? GO:0000027 ... P14126 25209664
    275855 4u53:L3 (3.3) BS05 OHX ? GO:0000027 ... P14126 25209664
    275856 4u53:L4 (3.3) BS01 rna ? GO:0002181 ... P10664 25209664
    275857 4u53:L4 (3.3) BS02 rna ? GO:0002181 ... P10664 25209664
    275858 4u53:L4 (3.3) BS03 OHX ? GO:0002181 ... P10664 25209664
    275859 4u53:L5 (3.3) BS01 rna ? GO:0000027 ... P26321 25209664
    275860 4u53:L5 (3.3) BS02 rna ? GO:0000027 ... P26321 25209664
    275861 4u53:L6 (3.3) BS01 rna ? GO:0000027 ... Q02326 25209664
    275862 4u53:L7 (3.3) BS01 rna ? GO:0000463 ... P05737 25209664
    275863 4u53:L7 (3.3) BS02 rna ? GO:0000463 ... P05737 25209664
    275864 4u53:L8 (3.3) BS01 rna ? GO:0000470 ... P17076 25209664
    275865 4u53:L8 (3.3) BS02 rna ? GO:0000470 ... P17076 25209664
    275866 4u53:L9 (3.3) BS01 rna ? GO:0002181 ... P05738 25209664
    275867 4u53:M0 (3.3) BS01 rna ? GO:0000027 ... P41805 25209664
    275868 4u53:M0 (3.3) BS02 rna ? GO:0000027 ... P41805 25209664
    275869 4u53:M0 (3.3) BS03 MG ? GO:0000027 ... P41805 25209664
    275870 4u53:M1 (3.3) BS01 rna ? GO:0000027 ... Q3E757 25209664
    275871 4u53:M1 (3.3) BS02 rna ? GO:0000027 ... Q3E757 25209664
    275872 4u53:M3 (3.3) BS01 rna ? GO:0002181 ... Q12690 25209664
    275873 4u53:M3 (3.3) BS02 rna ? GO:0002181 ... Q12690 25209664
    275874 4u53:M4 (3.3) BS01 rna ? GO:0000027 ... P36105 25209664
    275875 4u53:M5 (3.3) BS01 rna ? GO:0000470 ... P05748 25209664
    275876 4u53:M5 (3.3) BS02 rna ? GO:0000470 ... P05748 25209664
    275877 4u53:M5 (3.3) BS03 OHX ? GO:0000470 ... P05748 25209664
    275878 4u53:M6 (3.3) BS01 rna ? GO:0000470 ... P26784 25209664
    275879 4u53:M7 (3.3) BS01 rna ? GO:0000448 ... P05740 25209664
    275880 4u53:M7 (3.3) BS02 rna ? GO:0000448 ... P05740 25209664
    275881 4u53:M7 (3.3) BS03 MG ? GO:0000448 ... P05740 25209664
    275882 4u53:M7 (3.3) BS04 OHX ? GO:0000448 ... P05740 25209664
    275883 4u53:M8 (3.3) BS01 rna ? GO:0002181 ... P0CX49 25209664
    275884 4u53:M9 (3.3) BS01 rna ? GO:0002181 ... P0CX82 25209664
    275885 4u53:M9 (3.3) BS02 rna ? GO:0002181 ... P0CX82 25209664
    275886 4u53:M9 (3.3) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    275887 4u53:N0 (3.3) BS01 rna ? GO:0002181 ... P0CX23 25209664
    275888 4u53:N0 (3.3) BS02 rna ? GO:0002181 ... P0CX23 25209664
    275889 4u53:N1 (3.3) BS01 rna ? GO:0002181 ... Q02753 25209664
    275890 4u53:N1 (3.3) BS02 rna ? GO:0002181 ... Q02753 25209664
    275891 4u53:N1 (3.3) BS03 OHX ? GO:0002181 ... Q02753 25209664
    275892 4u53:N2 (3.3) BS01 rna ? GO:0002181 ... P05749 25209664
    275893 4u53:N3 (3.3) BS01 rna ? GO:0002181 ... P0CX41 25209664
    275894 4u53:N3 (3.3) BS02 rna ? GO:0002181 ... P0CX41 25209664
    275895 4u53:N4 (3.3) BS01 rna ? GO:0002181 ... P04449 25209664
    275896 4u53:N4 (3.3) BS02 rna ? GO:0002181 ... P04449 25209664
    275897 4u53:N5 (3.3) BS01 rna ? GO:0000027 ... P04456 25209664
    275898 4u53:N5 (3.3) BS02 rna ? GO:0000027 ... P04456 25209664
    275899 4u53:N6 (3.3) BS01 rna ? GO:0002181 ... P05743 25209664
    275900 4u53:N6 (3.3) BS02 rna ? GO:0002181 ... P05743 25209664
    275901 4u53:N7 (3.3) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    275902 4u53:N8 (3.3) BS01 rna ? GO:0002181 ... P02406 25209664
    275903 4u53:N8 (3.3) BS02 MG ? GO:0002181 ... P02406 25209664
    275904 4u53:N8 (3.3) BS03 MG ? GO:0002181 ... P02406 25209664
    275905 4u53:N9 (3.3) BS01 rna ? GO:0002181 ... P05747 25209664
    275906 4u53:N9 (3.3) BS02 OHX ? GO:0002181 ... P05747 25209664
    275907 4u53:O0 (3.3) BS01 rna ? GO:0002181 ... P14120 25209664
    275908 4u53:O1 (3.3) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    275909 4u53:O1 (3.3) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    275910 4u53:O2 (3.3) BS01 rna ? GO:0002181 ... P38061 25209664
    275911 4u53:O3 (3.3) BS01 rna ? GO:0000027 ... P05744 25209664
    275912 4u53:O3 (3.3) BS02 OHX ? GO:0000027 ... P05744 25209664
    275913 4u53:O4 (3.3) BS01 rna ? GO:0002181 ... P87262 25209664
    275914 4u53:O5 (3.3) BS01 rna ? GO:0000463 ... P0CX84 25209664
    275915 4u53:O5 (3.3) BS02 rna ? GO:0000463 ... P0CX84 25209664
    275916 4u53:O6 (3.3) BS01 rna ? GO:0000470 ... P05745 25209664
    275917 4u53:O7 (3.3) BS01 rna ? GO:0000448 ... P49166 25209664
    275918 4u53:O7 (3.3) BS02 rna ? GO:0000448 ... P49166 25209664
    275919 4u53:O7 (3.3) BS03 OHX ? GO:0000448 ... P49166 25209664
    275920 4u53:O7 (3.3) BS04 OHX ? GO:0000448 ... P49166 25209664
    275921 4u53:O7 (3.3) BS05 ZN ? GO:0000448 ... P49166 25209664
    275922 4u53:O7 (3.3) BS06 OHX ? GO:0000448 ... P49166 25209664
    275923 4u53:O8 (3.3) BS01 rna ? GO:0002181 ... P49167 25209664
    275924 4u53:O9 (3.3) BS01 rna ? GO:0002181 ... P04650 25209664
    275925 4u53:O9 (3.3) BS02 rna ? GO:0002181 ... P04650 25209664
    275926 4u53:Q0 (3.3) BS01 rna ? GO:0003735 ... P0CH08 25209664
    275927 4u53:Q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    275928 4u53:Q2 (3.3) BS01 rna ? GO:0002181 ... P0CX27 25209664
    275929 4u53:Q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    275930 4u53:Q2 (3.3) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    275931 4u53:Q3 (3.3) BS01 rna ? GO:0002181 ... P0CX25 25209664
    275932 4u53:Q3 (3.3) BS02 ZN ? GO:0002181 ... P0CX25 25209664
    275933 4u53:S0 (3.3) BS01 rna ? GO:0000028 ... P32905 25209664
    275934 4u53:S1 (3.3) BS01 rna ? GO:0000462 ... P33442 25209664
    275935 4u53:S1 (3.3) BS02 OHX ? GO:0000462 ... P33442 25209664
    275936 4u53:S2 (3.3) BS01 rna ? GO:0000054 ... P25443 25209664
    275937 4u53:S3 (3.3) BS01 rna ? GO:0000054 ... P05750 25209664
    275938 4u53:S4 (3.3) BS01 rna ? GO:0002181 ... P0CX35 25209664
    275939 4u53:S4 (3.3) BS02 MG ? GO:0002181 ... P0CX35 25209664
    275940 4u53:S5 (3.3) BS01 rna ? GO:0000054 ... P26783 25209664
    275941 4u53:S6 (3.3) BS01 rna ? GO:0000462 ... P0CX37 25209664
    275942 4u53:S7 (3.3) BS01 rna ? GO:0002181 ... P26786 25209664
    275943 4u53:S8 (3.3) BS01 rna ? GO:0000462 ... P0CX39 25209664
    275944 4u53:S8 (3.3) BS02 rna ? GO:0000462 ... P0CX39 25209664
    275945 4u53:S8 (3.3) BS03 OHX ? GO:0000462 ... P0CX39 25209664
    275946 4u53:S9 (3.3) BS01 rna ? GO:0000462 ... O13516 25209664
    275947 4u53:SM (3.3) BS01 rna ? GO:0000723 ... P39015 25209664
    275948 4u53:SM (3.3) BS02 rna ? GO:0000723 ... P39015 25209664
    275949 4u53:SR (3.3) BS01 rna ? GO:0001965 ... P38011 25209664
    275950 4u53:SR (3.3) BS02 OHX ? GO:0001965 ... P38011 25209664
    275951 4u53:c0 (3.3) BS01 rna ? GO:0000054 ... Q08745 25209664
    275952 4u53:c1 (3.3) BS01 rna ? GO:0000028 ... P0CX47 25209664
    275953 4u53:c2 (3.3) BS01 rna ? GO:0000028 ... P48589 25209664
    275954 4u53:c3 (3.3) BS01 rna ? GO:0000462 ... P05756 25209664
    275955 4u53:c3 (3.3) BS02 rna ? GO:0000462 ... P05756 25209664
    275956 4u53:c4 (3.3) BS01 rna ? GO:0000028 ... P06367 25209664
    275957 4u53:c5 (3.3) BS01 rna ? GO:0000054 ... Q01855 25209664
    275958 4u53:c5 (3.3) BS02 OHX ? GO:0000054 ... Q01855 25209664
    275959 4u53:c6 (3.3) BS01 rna ? GO:0000462 ... P0CX51 25209664
    275960 4u53:c7 (3.3) BS01 rna ? GO:0000028 ... P02407 25209664
    275961 4u53:c8 (3.3) BS01 rna ? GO:0000054 ... P0CX55 25209664
    275962 4u53:c9 (3.3) BS01 rna ? GO:0000054 ... P07280 25209664
    275963 4u53:c9 (3.3) BS02 MG ? GO:0000054 ... P07280 25209664
    275964 4u53:d0 (3.3) BS01 rna ? GO:0000462 ... P38701 25209664
    275965 4u53:d2 (3.3) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    275966 4u53:d3 (3.3) BS01 rna ? GO:0000462 ... P0CX29 25209664
    275967 4u53:d3 (3.3) BS02 MG ? GO:0000462 ... P0CX29 25209664
    275968 4u53:d4 (3.3) BS01 rna ? GO:0000462 ... P0CX31 25209664
    275969 4u53:d5 (3.3) BS01 rna ? GO:0002181 ... Q3E792 25209664
    275970 4u53:d6 (3.3) BS01 rna ? GO:0003735 ... P39939 25209664
    275971 4u53:d6 (3.3) BS02 ZN ? GO:0003735 ... P39939 25209664
    275972 4u53:d7 (3.3) BS01 rna ? GO:0000028 ... P35997 25209664
    275973 4u53:d8 (3.3) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    275974 4u53:d9 (3.3) BS01 rna ? GO:0002181 ... P41057 25209664
    275975 4u53:d9 (3.3) BS02 ZN ? GO:0002181 ... P41057 25209664
    275976 4u53:e0 (3.3) BS01 rna ? GO:0002181 ... P0CX33 25209664
    275977 4u53:e1 (3.3) BS01 rna ? GO:0003735 ... P05759 25209664
    275978 4u53:l2 (3.3) BS01 rna ? GO:0002181 ... P0CX45 25209664
    275979 4u53:l2 (3.3) BS02 rna ? GO:0002181 ... P0CX45 25209664
    275980 4u53:l2 (3.3) BS03 MG ? GO:0002181 ... P0CX45 25209664
    275981 4u53:l3 (3.3) BS01 rna ? GO:0000027 ... P14126 25209664
    275982 4u53:l3 (3.3) BS02 MG ? GO:0000027 ... P14126 25209664
    275983 4u53:l3 (3.3) BS03 MG ? GO:0000027 ... P14126 25209664
    275984 4u53:l3 (3.3) BS04 OHX ? GO:0000027 ... P14126 25209664
    275985 4u53:l3 (3.3) BS05 OHX ? GO:0000027 ... P14126 25209664
    275986 4u53:l4 (3.3) BS01 rna ? GO:0002181 ... P10664 25209664
    275987 4u53:l4 (3.3) BS02 rna ? GO:0002181 ... P10664 25209664
    275988 4u53:l5 (3.3) BS01 rna ? GO:0000027 ... P26321 25209664
    275989 4u53:l5 (3.3) BS02 rna ? GO:0000027 ... P26321 25209664
    275990 4u53:l5 (3.3) BS03 MG ? GO:0000027 ... P26321 25209664
    275991 4u53:l5 (3.3) BS04 OHX ? GO:0000027 ... P26321 25209664
    275992 4u53:l5 (3.3) BS05 OHX ? GO:0000027 ... P26321 25209664
    275993 4u53:l5 (3.3) BS06 OHX ? GO:0000027 ... P26321 25209664
    275994 4u53:l6 (3.3) BS01 rna ? GO:0000027 ... Q02326 25209664
    275995 4u53:l7 (3.3) BS01 rna ? GO:0000463 ... P05737 25209664
    275996 4u53:l7 (3.3) BS02 rna ? GO:0000463 ... P05737 25209664
    275997 4u53:l7 (3.3) BS03 OHX ? GO:0000463 ... P05737 25209664
    275998 4u53:l8 (3.3) BS01 rna ? GO:0000470 ... P17076 25209664
    275999 4u53:l8 (3.3) BS02 rna ? GO:0000470 ... P17076 25209664
    276000 4u53:l9 (3.3) BS01 rna ? GO:0002181 ... P05738 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).