SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    276001 4u53:l9 (3.3) BS02 OHX ? GO:0002181 ... P05738 25209664
    276002 4u53:m0 (3.3) BS01 rna ? GO:0000027 ... P41805 25209664
    276003 4u53:m0 (3.3) BS02 rna ? GO:0000027 ... P41805 25209664
    276004 4u53:m0 (3.3) BS03 OHX ? GO:0000027 ... P41805 25209664
    276005 4u53:m0 (3.3) BS04 OHX ? GO:0000027 ... P41805 25209664
    276006 4u53:m1 (3.3) BS01 rna ? GO:0000027 ... Q3E757 25209664
    276007 4u53:m1 (3.3) BS02 rna ? GO:0000027 ... Q3E757 25209664
    276008 4u53:m1 (3.3) BS03 OHX ? GO:0000027 ... Q3E757 25209664
    276009 4u53:m2 (3.3) BS01 rna N/A N/A N/A 25209664
    276010 4u53:m3 (3.3) BS01 rna ? GO:0002181 ... Q12690 25209664
    276011 4u53:m3 (3.3) BS02 rna ? GO:0002181 ... Q12690 25209664
    276012 4u53:m4 (3.3) BS01 rna ? GO:0000027 ... P36105 25209664
    276013 4u53:m5 (3.3) BS01 rna ? GO:0000470 ... P05748 25209664
    276014 4u53:m5 (3.3) BS02 rna ? GO:0000470 ... P05748 25209664
    276015 4u53:m5 (3.3) BS03 OHX ? GO:0000470 ... P05748 25209664
    276016 4u53:m6 (3.3) BS01 rna ? GO:0000470 ... P26784 25209664
    276017 4u53:m6 (3.3) BS02 MG ? GO:0000470 ... P26784 25209664
    276018 4u53:m7 (3.3) BS01 rna ? GO:0000448 ... P05740 25209664
    276019 4u53:m7 (3.3) BS02 rna ? GO:0000448 ... P05740 25209664
    276020 4u53:m8 (3.3) BS01 rna ? GO:0002181 ... P0CX49 25209664
    276021 4u53:m9 (3.3) BS01 rna ? GO:0002181 ... P0CX82 25209664
    276022 4u53:m9 (3.3) BS02 rna ? GO:0002181 ... P0CX82 25209664
    276023 4u53:m9 (3.3) BS03 OHX ? GO:0002181 ... P0CX82 25209664
    276024 4u53:n0 (3.3) BS01 rna ? GO:0002181 ... P0CX23 25209664
    276025 4u53:n0 (3.3) BS02 rna ? GO:0002181 ... P0CX23 25209664
    276026 4u53:n1 (3.3) BS01 rna ? GO:0002181 ... Q02753 25209664
    276027 4u53:n1 (3.3) BS02 rna ? GO:0002181 ... Q02753 25209664
    276028 4u53:n1 (3.3) BS03 OHX ? GO:0002181 ... Q02753 25209664
    276029 4u53:n2 (3.3) BS01 rna ? GO:0002181 ... P05749 25209664
    276030 4u53:n3 (3.3) BS01 rna ? GO:0002181 ... P0CX41 25209664
    276031 4u53:n3 (3.3) BS02 rna ? GO:0002181 ... P0CX41 25209664
    276032 4u53:n4 (3.3) BS01 rna ? GO:0002181 ... P04449 25209664
    276033 4u53:n4 (3.3) BS02 rna ? GO:0002181 ... P04449 25209664
    276034 4u53:n5 (3.3) BS01 rna ? GO:0000027 ... P04456 25209664
    276035 4u53:n5 (3.3) BS02 rna ? GO:0000027 ... P04456 25209664
    276036 4u53:n6 (3.3) BS01 rna ? GO:0002181 ... P05743 25209664
    276037 4u53:n6 (3.3) BS02 rna ? GO:0002181 ... P05743 25209664
    276038 4u53:n6 (3.3) BS03 OHX ? GO:0002181 ... P05743 25209664
    276039 4u53:n7 (3.3) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    276040 4u53:n8 (3.3) BS01 rna ? GO:0002181 ... P02406 25209664
    276041 4u53:n8 (3.3) BS02 MG ? GO:0002181 ... P02406 25209664
    276042 4u53:n9 (3.3) BS01 rna ? GO:0002181 ... P05747 25209664
    276043 4u53:n9 (3.3) BS02 OHX ? GO:0002181 ... P05747 25209664
    276044 4u53:o0 (3.3) BS01 rna ? GO:0002181 ... P14120 25209664
    276045 4u53:o1 (3.3) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    276046 4u53:o2 (3.3) BS01 rna ? GO:0002181 ... P38061 25209664
    276047 4u53:o3 (3.3) BS01 rna ? GO:0000027 ... P05744 25209664
    276048 4u53:o3 (3.3) BS02 MG ? GO:0000027 ... P05744 25209664
    276049 4u53:o3 (3.3) BS03 OHX ? GO:0000027 ... P05744 25209664
    276050 4u53:o4 (3.3) BS01 rna ? GO:0002181 ... P87262 25209664
    276051 4u53:o5 (3.3) BS01 rna ? GO:0000463 ... P0CX84 25209664
    276052 4u53:o5 (3.3) BS02 rna ? GO:0000463 ... P0CX84 25209664
    276053 4u53:o6 (3.3) BS01 rna ? GO:0000470 ... P05745 25209664
    276054 4u53:o7 (3.3) BS01 rna ? GO:0000448 ... P49166 25209664
    276055 4u53:o7 (3.3) BS02 rna ? GO:0000448 ... P49166 25209664
    276056 4u53:o7 (3.3) BS03 OHX ? GO:0000448 ... P49166 25209664
    276057 4u53:o7 (3.3) BS04 ZN ? GO:0000448 ... P49166 25209664
    276058 4u53:o7 (3.3) BS05 OHX ? GO:0000448 ... P49166 25209664
    276059 4u53:o7 (3.3) BS06 OHX ? GO:0000448 ... P49166 25209664
    276060 4u53:o8 (3.3) BS01 rna ? GO:0002181 ... P49167 25209664
    276061 4u53:o9 (3.3) BS01 rna ? GO:0002181 ... P04650 25209664
    276062 4u53:o9 (3.3) BS02 rna ? GO:0002181 ... P04650 25209664
    276063 4u53:p0 (3.3) BS01 rna ? GO:0000027 ... P05317 25209664
    276064 4u53:q0 (3.3) BS01 rna ? GO:0003735 ... P0CH08 25209664
    276065 4u53:q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 25209664
    276066 4u53:q2 (3.3) BS01 rna ? GO:0002181 ... P0CX27 25209664
    276067 4u53:q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 25209664
    276068 4u53:q2 (3.3) BS03 OHX ? GO:0002181 ... P0CX27 25209664
    276069 4u53:q3 (3.3) BS01 rna ? GO:0002181 ... P0CX25 25209664
    276070 4u53:q3 (3.3) BS02 rna ? GO:0002181 ... P0CX25 25209664
    276071 4u53:q3 (3.3) BS03 ZN ? GO:0002181 ... P0CX25 25209664
    276072 4u53:s0 (3.3) BS01 rna ? GO:0000028 ... P32905 25209664
    276073 4u53:s1 (3.3) BS01 rna ? GO:0000462 ... P33442 25209664
    276074 4u53:s1 (3.3) BS02 OHX ? GO:0000462 ... P33442 25209664
    276075 4u53:s2 (3.3) BS01 rna ? GO:0000054 ... P25443 25209664
    276076 4u53:s3 (3.3) BS01 rna ? GO:0000054 ... P05750 25209664
    276077 4u53:s4 (3.3) BS01 rna ? GO:0002181 ... P0CX35 25209664
    276078 4u53:s4 (3.3) BS02 MG ? GO:0002181 ... P0CX35 25209664
    276079 4u53:s5 (3.3) BS01 rna ? GO:0000054 ... P26783 25209664
    276080 4u53:s6 (3.3) BS01 rna ? GO:0000462 ... P0CX37 25209664
    276081 4u53:s7 (3.3) BS01 rna ? GO:0002181 ... P26786 25209664
    276082 4u53:s8 (3.3) BS01 rna ? GO:0000462 ... P0CX39 25209664
    276083 4u53:s8 (3.3) BS02 rna ? GO:0000462 ... P0CX39 25209664
    276084 4u53:s9 (3.3) BS01 rna ? GO:0000462 ... O13516 25209664
    276085 4u53:sM (3.3) BS01 rna ? GO:0000723 ... P39015 25209664
    276086 4u53:sM (3.3) BS02 rna ? GO:0000723 ... P39015 25209664
    276087 4u53:sM (3.3) BS03 MG ? GO:0000723 ... P39015 25209664
    276088 4u53:sR (3.3) BS01 rna ? GO:0001965 ... P38011 25209664
    276089 4u53:sR (3.3) BS02 OHX ? GO:0001965 ... P38011 25209664
    276090 4u54:A (2.41) BS01 3C5 ? N/A P52293 25899172 MOAD: Kd=8.7mM
    276091 4u55:C0 (3.2) BS01 rna ? GO:0000054 ... Q08745 25209664
    276092 4u55:C1 (3.2) BS01 rna ? GO:0000028 ... P0CX47 25209664
    276093 4u55:C2 (3.2) BS01 rna ? GO:0000028 ... P48589 25209664
    276094 4u55:C3 (3.2) BS01 rna ? GO:0000462 ... P05756 25209664
    276095 4u55:C3 (3.2) BS02 rna ? GO:0000462 ... P05756 25209664
    276096 4u55:C3 (3.2) BS03 OHX ? GO:0000462 ... P05756 25209664
    276097 4u55:C4 (3.2) BS01 rna ? GO:0000028 ... P06367 25209664
    276098 4u55:C5 (3.2) BS01 rna ? GO:0000054 ... Q01855 25209664
    276099 4u55:C5 (3.2) BS02 rna ? GO:0000054 ... Q01855 25209664
    276100 4u55:C5 (3.2) BS03 OHX ? GO:0000054 ... Q01855 25209664
    276101 4u55:C6 (3.2) BS01 rna ? GO:0000462 ... P0CX51 25209664
    276102 4u55:C7 (3.2) BS01 rna ? GO:0000028 ... P02407 25209664
    276103 4u55:C8 (3.2) BS01 rna ? GO:0000054 ... P0CX55 25209664
    276104 4u55:C8 (3.2) BS02 MG ? GO:0000054 ... P0CX55 25209664
    276105 4u55:C9 (3.2) BS01 rna ? GO:0000054 ... P07280 25209664
    276106 4u55:D0 (3.2) BS01 rna ? GO:0000462 ... P38701 25209664
    276107 4u55:D2 (3.2) BS01 rna ? GO:0002181 ... P0C0W1 25209664
    276108 4u55:D3 (3.2) BS01 rna ? GO:0000462 ... P0CX29 25209664
    276109 4u55:D4 (3.2) BS01 rna ? GO:0000462 ... P0CX31 25209664
    276110 4u55:D5 (3.2) BS01 rna ? GO:0002181 ... Q3E792 25209664
    276111 4u55:D6 (3.2) BS01 rna ? GO:0003735 ... P39939 25209664
    276112 4u55:D6 (3.2) BS02 ZN ? GO:0003735 ... P39939 25209664
    276113 4u55:D7 (3.2) BS01 rna ? GO:0000028 ... P35997 25209664
    276114 4u55:D8 (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 25209664
    276115 4u55:D9 (3.2) BS01 rna ? GO:0002181 ... P41057 25209664
    276116 4u55:D9 (3.2) BS02 ZN ? GO:0002181 ... P41057 25209664
    276117 4u55:D9 (3.2) BS03 OHX ? GO:0002181 ... P41057 25209664
    276118 4u55:E0 (3.2) BS01 rna ? GO:0002181 ... P0CX33 25209664
    276119 4u55:E1 (3.2) BS01 rna ? GO:0003735 ... P05759 25209664
    276120 4u55:E1 (3.2) BS02 ZN ? GO:0003735 ... P05759 25209664
    276121 4u55:L2 (3.2) BS01 rna ? GO:0002181 ... P0CX45 25209664
    276122 4u55:L2 (3.2) BS02 rna ? GO:0002181 ... P0CX45 25209664
    276123 4u55:L2 (3.2) BS03 MG ? GO:0002181 ... P0CX45 25209664
    276124 4u55:L2 (3.2) BS04 MG ? GO:0002181 ... P0CX45 25209664
    276125 4u55:L3 (3.2) BS01 rna ? GO:0000027 ... P14126 25209664
    276126 4u55:L3 (3.2) BS02 MG ? GO:0000027 ... P14126 25209664
    276127 4u55:L3 (3.2) BS03 OHX ? GO:0000027 ... P14126 25209664
    276128 4u55:L3 (3.2) BS04 OHX ? GO:0000027 ... P14126 25209664
    276129 4u55:L4 (3.2) BS01 rna ? GO:0002181 ... P10664 25209664
    276130 4u55:L4 (3.2) BS02 rna ? GO:0002181 ... P10664 25209664
    276131 4u55:L4 (3.2) BS03 OHX ? GO:0002181 ... P10664 25209664
    276132 4u55:L5 (3.2) BS01 rna ? GO:0000027 ... P26321 25209664
    276133 4u55:L5 (3.2) BS02 rna ? GO:0000027 ... P26321 25209664
    276134 4u55:L6 (3.2) BS01 rna ? GO:0000027 ... Q02326 25209664
    276135 4u55:L7 (3.2) BS01 rna ? GO:0000463 ... P05737 25209664
    276136 4u55:L7 (3.2) BS02 rna ? GO:0000463 ... P05737 25209664
    276137 4u55:L7 (3.2) BS03 OHX ? GO:0000463 ... P05737 25209664
    276138 4u55:L8 (3.2) BS01 rna ? GO:0000470 ... P17076 25209664
    276139 4u55:L8 (3.2) BS02 rna ? GO:0000470 ... P17076 25209664
    276140 4u55:L9 (3.2) BS01 rna ? GO:0002181 ... P05738 25209664
    276141 4u55:M0 (3.2) BS01 rna ? GO:0000027 ... P41805 25209664
    276142 4u55:M0 (3.2) BS02 rna ? GO:0000027 ... P41805 25209664
    276143 4u55:M0 (3.2) BS03 MG ? GO:0000027 ... P41805 25209664
    276144 4u55:M0 (3.2) BS04 OHX ? GO:0000027 ... P41805 25209664
    276145 4u55:M1 (3.2) BS01 rna ? GO:0000027 ... Q3E757 25209664
    276146 4u55:M1 (3.2) BS02 rna ? GO:0000027 ... Q3E757 25209664
    276147 4u55:M3 (3.2) BS01 rna ? GO:0002181 ... Q12690 25209664
    276148 4u55:M3 (3.2) BS02 rna ? GO:0002181 ... Q12690 25209664
    276149 4u55:M4 (3.2) BS01 rna ? GO:0000027 ... P36105 25209664
    276150 4u55:M5 (3.2) BS01 rna ? GO:0000470 ... P05748 25209664
    276151 4u55:M5 (3.2) BS02 rna ? GO:0000470 ... P05748 25209664
    276152 4u55:M5 (3.2) BS03 OHX ? GO:0000470 ... P05748 25209664
    276153 4u55:M6 (3.2) BS01 rna ? GO:0000470 ... P26784 25209664
    276154 4u55:M7 (3.2) BS01 rna ? GO:0000448 ... P05740 25209664
    276155 4u55:M7 (3.2) BS02 rna ? GO:0000448 ... P05740 25209664
    276156 4u55:M7 (3.2) BS03 MG ? GO:0000448 ... P05740 25209664
    276157 4u55:M7 (3.2) BS04 OHX ? GO:0000448 ... P05740 25209664
    276158 4u55:M7 (3.2) BS05 OHX ? GO:0000448 ... P05740 25209664
    276159 4u55:M8 (3.2) BS01 rna ? GO:0002181 ... P0CX49 25209664
    276160 4u55:M9 (3.2) BS01 rna ? GO:0002181 ... P0CX82 25209664
    276161 4u55:M9 (3.2) BS02 rna ? GO:0002181 ... P0CX82 25209664
    276162 4u55:N0 (3.2) BS01 rna ? GO:0002181 ... P0CX23 25209664
    276163 4u55:N0 (3.2) BS02 rna ? GO:0002181 ... P0CX23 25209664
    276164 4u55:N1 (3.2) BS01 rna ? GO:0002181 ... Q02753 25209664
    276165 4u55:N1 (3.2) BS02 rna ? GO:0002181 ... Q02753 25209664
    276166 4u55:N1 (3.2) BS03 OHX ? GO:0002181 ... Q02753 25209664
    276167 4u55:N2 (3.2) BS01 rna ? GO:0002181 ... P05749 25209664
    276168 4u55:N3 (3.2) BS01 rna ? GO:0002181 ... P0CX41 25209664
    276169 4u55:N3 (3.2) BS02 rna ? GO:0002181 ... P0CX41 25209664
    276170 4u55:N4 (3.2) BS01 rna ? GO:0002181 ... P04449 25209664
    276171 4u55:N5 (3.2) BS01 rna ? GO:0000027 ... P04456 25209664
    276172 4u55:N5 (3.2) BS02 rna ? GO:0000027 ... P04456 25209664
    276173 4u55:N6 (3.2) BS01 rna ? GO:0002181 ... P05743 25209664
    276174 4u55:N6 (3.2) BS02 rna ? GO:0002181 ... P05743 25209664
    276175 4u55:N7 (3.2) BS01 rna ? GO:0002181 ... P0C2H6 25209664
    276176 4u55:N8 (3.2) BS01 rna ? GO:0002181 ... P02406 25209664
    276177 4u55:N8 (3.2) BS02 MG ? GO:0002181 ... P02406 25209664
    276178 4u55:N8 (3.2) BS03 MG ? GO:0002181 ... P02406 25209664
    276179 4u55:N8 (3.2) BS04 MG ? GO:0002181 ... P02406 25209664
    276180 4u55:N9 (3.2) BS01 rna ? GO:0002181 ... P05747 25209664
    276181 4u55:N9 (3.2) BS02 OHX ? GO:0002181 ... P05747 25209664
    276182 4u55:O0 (3.2) BS01 rna ? GO:0002181 ... P14120 25209664
    276183 4u55:O1 (3.2) BS01 rna ? GO:0002181 ... P0C2H8 25209664
    276184 4u55:O1 (3.2) BS02 OHX ? GO:0002181 ... P0C2H8 25209664
    276185 4u55:O2 (3.2) BS01 rna ? GO:0002181 ... P38061 25209664
    276186 4u55:O3 (3.2) BS01 rna ? GO:0000027 ... P05744 25209664
    276187 4u55:O3 (3.2) BS02 OHX ? GO:0000027 ... P05744 25209664
    276188 4u55:O4 (3.2) BS01 rna ? GO:0002181 ... P87262 25209664
    276189 4u55:O4 (3.2) BS02 MG ? GO:0002181 ... P87262 25209664
    276190 4u55:O5 (3.2) BS01 rna ? GO:0000463 ... P0CX84 25209664
    276191 4u55:O5 (3.2) BS02 rna ? GO:0000463 ... P0CX84 25209664
    276192 4u55:O6 (3.2) BS01 rna ? GO:0000470 ... P05745 25209664
    276193 4u55:O7 (3.2) BS01 rna ? GO:0000448 ... P49166 25209664
    276194 4u55:O7 (3.2) BS02 rna ? GO:0000448 ... P49166 25209664
    276195 4u55:O7 (3.2) BS03 ZN ? GO:0000448 ... P49166 25209664
    276196 4u55:O7 (3.2) BS04 OHX ? GO:0000448 ... P49166 25209664
    276197 4u55:O7 (3.2) BS05 OHX ? GO:0000448 ... P49166 25209664
    276198 4u55:O8 (3.2) BS01 rna ? GO:0002181 ... P49167 25209664
    276199 4u55:O9 (3.2) BS01 rna ? GO:0002181 ... P04650 25209664
    276200 4u55:O9 (3.2) BS02 rna ? GO:0002181 ... P04650 25209664

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).