SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    276801 4ug0:LE (3.6) BS01 rna ? GO:0002181 ... Q02878 25901680
    276802 4ug0:LF (3.6) BS01 rna ? GO:0000463 ... P18124 25901680
    276803 4ug0:LF (3.6) BS02 rna ? GO:0000463 ... P18124 25901680
    276804 4ug0:LG (3.6) BS01 rna ? GO:0000470 ... P62424 25901680
    276805 4ug0:LG (3.6) BS02 rna ? GO:0000470 ... P62424 25901680
    276806 4ug0:LH (3.6) BS01 rna ? GO:0002181 ... P32969 25901680
    276807 4ug0:LI (3.6) BS01 rna ? GO:0000027 ... Q96L21 25901680
    276808 4ug0:LI (3.6) BS02 rna ? GO:0000027 ... Q96L21 25901680
    276809 4ug0:LJ (3.6) BS01 rna ? GO:0000027 ... P62913 25901680
    276810 4ug0:LJ (3.6) BS02 rna ? GO:0000027 ... P62913 25901680
    276811 4ug0:LL (3.6) BS01 rna ? GO:0001824 ... P26373 25901680
    276812 4ug0:LL (3.6) BS02 rna ? GO:0001824 ... P26373 25901680
    276813 4ug0:LM (3.6) BS01 rna ? GO:0002181 ... P50914 25901680
    276814 4ug0:LN (3.6) BS01 rna ? GO:0002181 ... P61313 25901680
    276815 4ug0:LN (3.6) BS02 rna ? GO:0002181 ... P61313 25901680
    276816 4ug0:LO (3.6) BS01 rna ? GO:0002181 ... P40429 25901680
    276817 4ug0:LP (3.6) BS01 rna ? GO:0002181 ... P18621 25901680
    276818 4ug0:LP (3.6) BS02 rna ? GO:0002181 ... P18621 25901680
    276819 4ug0:LP (3.6) BS03 MG ? GO:0002181 ... P18621 25901680
    276820 4ug0:LQ (3.6) BS01 rna ? GO:0002181 ... Q07020 25901680
    276821 4ug0:LR (3.6) BS01 rna ? GO:0002181 ... P84098 25901680
    276822 4ug0:LR (3.6) BS02 rna ? GO:0002181 ... P84098 25901680
    276823 4ug0:LS (3.6) BS01 rna ? GO:0002181 ... Q02543 25901680
    276824 4ug0:LS (3.6) BS02 rna ? GO:0002181 ... Q02543 25901680
    276825 4ug0:LT (3.6) BS01 rna ? GO:0002181 ... P46778 25901680
    276826 4ug0:LT (3.6) BS02 rna ? GO:0002181 ... P46778 25901680
    276827 4ug0:LU (3.6) BS01 rna ? GO:0002181 ... P35268 25901680
    276828 4ug0:LV (3.6) BS01 rna ? GO:0000122 ... P62829 25901680
    276829 4ug0:LW (3.6) BS01 rna ? GO:0000027 ... P83731 25901680
    276830 4ug0:LW (3.6) BS02 rna ? GO:0000027 ... P83731 25901680
    276831 4ug0:LX (3.6) BS01 rna ? GO:0002181 ... P62750 25901680
    276832 4ug0:LX (3.6) BS02 rna ? GO:0002181 ... P62750 25901680
    276833 4ug0:LY (3.6) BS01 rna ? GO:0002181 ... P61254 25901680
    276834 4ug0:LY (3.6) BS02 rna ? GO:0002181 ... P61254 25901680
    276835 4ug0:LZ (3.6) BS01 rna ? GO:0002181 ... P61353 25901680
    276836 4ug0:La (3.6) BS01 rna ? GO:0002181 ... P46776 25901680
    276837 4ug0:Lb (3.6) BS01 rna ? GO:0002181 ... P47914 25901680
    276838 4ug0:Lc (3.6) BS01 rna ? GO:0002181 ... P62888 25901680
    276839 4ug0:Ld (3.6) BS01 rna ? GO:0002181 ... P62899 25901680
    276840 4ug0:Le (3.6) BS01 rna ? GO:0002181 ... P62910 25901680
    276841 4ug0:Lf (3.6) BS01 rna ? GO:0000049 ... P18077 25901680
    276842 4ug0:Lg (3.6) BS01 rna ? GO:0002181 ... P49207 25901680
    276843 4ug0:Lg (3.6) BS02 ZN ? GO:0002181 ... P49207 25901680
    276844 4ug0:Lh (3.6) BS01 rna ? GO:0000463 ... P42766 25901680
    276845 4ug0:Lh (3.6) BS02 rna ? GO:0000463 ... P42766 25901680
    276846 4ug0:Li (3.6) BS01 rna ? GO:0002181 ... Q9Y3U8 25901680
    276847 4ug0:Lj (3.6) BS01 rna ? GO:0002181 ... P61927 25901680
    276848 4ug0:Lj (3.6) BS02 rna ? GO:0002181 ... P61927 25901680
    276849 4ug0:Lj (3.6) BS03 ZN ? GO:0002181 ... P61927 25901680
    276850 4ug0:Lk (3.6) BS01 rna ? GO:0001501 ... P63173 25901680
    276851 4ug0:Ll (3.6) BS01 rna ? GO:0002181 ... P62891 25901680
    276852 4ug0:Ll (3.6) BS02 rna ? GO:0002181 ... P62891 25901680
    276853 4ug0:Lm (3.6) BS01 rna ? GO:0002181 ... P62987 25901680
    276854 4ug0:Lm (3.6) BS02 ZN ? GO:0002181 ... P62987 25901680
    276855 4ug0:Lo (3.6) BS01 rna ? GO:0002181 ... P83881 25901680
    276856 4ug0:Lo (3.6) BS02 rna ? GO:0002181 ... P83881 25901680
    276857 4ug0:Lp (3.6) BS01 rna ? GO:0002181 ... P61513 25901680
    276858 4ug0:Lp (3.6) BS02 ZN ? GO:0002181 ... P61513 25901680
    276859 4ug0:Lr (3.6) BS01 rna ? GO:0002181 ... P46779 25901680
    276860 4ug0:Lz (3.6) BS01 rna ? GO:0002181 ... P62906 25901680
    276861 4ug0:SA (3.6) BS01 rna ? GO:0000028 ... P08865 25901680
    276862 4ug0:SB (3.6) BS01 rna ? GO:0002181 ... P61247 25901680
    276863 4ug0:SC (3.6) BS01 rna ? GO:0002181 ... P15880 25901680
    276864 4ug0:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 25901680
    276865 4ug0:SE (3.6) BS01 rna ? GO:0002181 ... P62701 25901680
    276866 4ug0:SF (3.6) BS01 rna ? GO:0000028 ... P46782 25901680
    276867 4ug0:SF (3.6) BS02 rna ? GO:0000028 ... P46782 25901680
    276868 4ug0:SG (3.6) BS01 rna ? GO:0000082 ... P62753 25901680
    276869 4ug0:SH (3.6) BS01 rna ? GO:0001843 ... P62081 25901680
    276870 4ug0:SI (3.6) BS01 rna ? GO:0000462 ... P62241 25901680
    276871 4ug0:SI (3.6) BS02 rna ? GO:0000462 ... P62241 25901680
    276872 4ug0:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 25901680
    276873 4ug0:SK (3.6) BS01 rna ? GO:0002181 ... P46783 25901680
    276874 4ug0:SL (3.6) BS01 rna ? GO:0002181 ... P62280 25901680
    276875 4ug0:SM (3.6) BS01 rna N/A GO:0003735 ... N/A 25901680
    276876 4ug0:SN (3.6) BS01 rna ? GO:0002181 ... P62277 25901680
    276877 4ug0:SO (3.6) BS01 rna ? GO:0000028 ... P62263 25901680
    276878 4ug0:SP (3.6) BS01 rna ? GO:0000028 ... P62841 25901680
    276879 4ug0:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 25901680
    276880 4ug0:SR (3.6) BS01 rna ? GO:0002181 ... P08708 25901680
    276881 4ug0:SS (3.6) BS01 rna ? GO:0002181 ... P62269 25901680
    276882 4ug0:ST (3.6) BS01 rna ? GO:0000028 ... P39019 25901680
    276883 4ug0:SU (3.6) BS01 rna ? GO:0002181 ... P60866 25901680
    276884 4ug0:SW (3.6) BS01 rna ? GO:0002181 ... P62244 25901680
    276885 4ug0:SX (3.6) BS01 rna ? GO:0002181 ... P62266 25901680
    276886 4ug0:SY (3.6) BS01 rna ? GO:0002181 ... P62847 25901680
    276887 4ug0:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 25901680
    276888 4ug0:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 25901680
    276889 4ug0:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 25901680
    276890 4ug0:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 25901680
    276891 4ug0:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 25901680
    276892 4ug0:Se (3.6) BS01 rna ? GO:0003735 ... P62861 25901680
    276893 4ug0:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 25901680
    276894 4ug0:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 25901680
    276895 4ug2:A (2.6) BS01 NGI ? GO:0001609 ... P29274 25762024 BindingDB: Ki=27nM, Kd=36nM, IC50=19nM, EC50=19953nM
    276896 4ug2:B (2.6) BS01 NGI ? GO:0001609 ... P29274 25762024 BindingDB: Ki=27nM, Kd=36nM, IC50=19nM, EC50=19953nM
    276897 4ug5:A (2.352) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276898 4ug5:A (2.352) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276899 4ug5:A (2.352) BS03 XFK 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=5.03e+3nM
    276900 4ug6:A (1.81) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276901 4ug6:A (1.81) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276902 4ug6:A (1.81) BS03 XFJ 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.68e+3nM
    276903 4ug6:A (1.81) BS04 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    276904 4ug6:A (1.81) BS05 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    276905 4ug7:A (1.76) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276906 4ug7:A (1.76) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276907 4ug7:A (1.76) BS03 1EV 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=4.47e+3nM
    276908 4ug8:A (1.888) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276909 4ug8:A (1.888) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276910 4ug8:A (1.888) BS03 HW1 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=4.5e+2nM
    276911 4ug9:A (1.841) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276912 4ug9:A (1.841) BS02 1EW 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=8.61e+3nM
    276913 4uga:A (1.9) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276914 4uga:A (1.9) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276915 4uga:A (1.9) BS03 Q05 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=6.10e+4nM
    276916 4ugb:A (1.912) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276917 4ugb:A (1.912) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276918 4ugb:A (1.912) BS03 QJ7 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.37e+5nM
    276919 4ugc:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276920 4ugc:A (1.801) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276921 4ugc:A (1.801) BS03 1Q6 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.87e+4nM
    276922 4ugd:A (2.03) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276923 4ugd:A (2.03) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276924 4ugd:A (2.03) BS03 Q14 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=3.79e+4nM
    276925 4uge:A (2.14) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276926 4uge:A (2.14) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276927 4uge:A (2.14) BS03 Q15 1.14.14.47 GO:0004517 ... O34453 26062720
    276928 4ugf:A (1.81) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276929 4ugf:A (1.81) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276930 4ugf:A (1.81) BS03 Q16 1.14.14.47 GO:0004517 ... O34453 26062720
    276931 4ugf:A (1.81) BS04 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    276932 4ugg:A (2.356) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276933 4ugg:A (2.356) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276934 4ugg:A (2.356) BS03 S5D 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.56e+4nM
    276935 4ugh:A (1.994) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276936 4ugh:A (1.994) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276937 4ugh:A (1.994) BS03 4V4 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=5.046e+4nM
    276938 4ugi:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276939 4ugi:A (1.801) BS02 SKO 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.83e+4nM
    276940 4ugi:A (1.801) BS03 POL 1.14.14.47 GO:0004517 ... O34453 26062720
    276941 4ugj:A (1.78) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276942 4ugj:A (1.78) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276943 4ugj:A (1.78) BS03 Q1T 1.14.14.47 GO:0004517 ... O34453 26062720
    276944 4ugk:A (1.62) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276945 4ugk:A (1.62) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276946 4ugk:A (1.62) BS03 7S9 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=2.23e+4nM
    276947 4ugl:A (1.82) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276948 4ugl:A (1.82) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276949 4ugl:A (1.82) BS03 S90 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=6.214e+4nM
    276950 4ugm:A (2.09) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276951 4ugm:A (2.09) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276952 4ugm:A (2.09) BS03 1QE 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=9.9e+4nM
    276953 4ugn:A (2.09) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276954 4ugn:A (2.09) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276955 4ugn:A (2.09) BS03 H49 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.78e+4nM
    276956 4ugo:A (2.38) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276957 4ugo:A (2.38) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276958 4ugo:A (2.38) BS03 1QF 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=6.23e+4nM
    276959 4ugp:A (1.8) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276960 4ugp:A (1.8) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276961 4ugp:A (1.8) BS03 I5U 1.14.14.47 GO:0004517 ... O34453 26062720
    276962 4ugq:A (1.85) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276963 4ugq:A (1.85) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276964 4ugq:A (1.85) BS03 7LN 1.14.14.47 GO:0004517 ... O34453 26062720
    276965 4ugr:A (2.09) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276966 4ugr:A (2.09) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276967 4ugr:A (2.09) BS03 6E5 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.10e+4nM
    276968 4ugs:A (1.99) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276969 4ugs:A (1.99) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276970 4ugs:A (1.99) BS03 H36 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=1.27e+5nM
    276971 4ugt:A (2.03) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276972 4ugt:A (2.03) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276973 4ugt:A (2.03) BS03 UGT 1.14.14.47 GO:0004517 ... O34453 26062720
    276974 4ugu:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276975 4ugu:A (1.801) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276976 4ugu:A (1.801) BS03 PQW 1.14.14.47 GO:0004517 ... O34453 26062720
    276977 4ugv:A (1.985) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276978 4ugv:A (1.985) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276979 4ugv:A (1.985) BS03 ARG 1.14.14.47 GO:0004517 ... O34453 26062720
    276980 4ugw:A (1.901) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276981 4ugw:A (1.901) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276982 4ugw:A (1.901) BS03 HW1 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=4.5e+2nM
    276983 4ugx:A (1.86) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276984 4ugx:A (1.86) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276985 4ugx:A (1.86) BS03 5H4 1.14.14.47 GO:0004517 ... O34453 26062720
    276986 4ugy:A (1.801) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 26062720
    276987 4ugy:A (1.801) BS02 H4B 1.14.14.47 GO:0004517 ... O34453 26062720
    276988 4ugy:A (1.801) BS03 EXI 1.14.14.47 GO:0004517 ... O34453 26062720 BindingDB: Kd=5.76e+4nM
    276989 4ugz:A (2.076) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26120733
    276990 4ugz:A (2.076) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 26120733
    276991 4ugz:A (2.076) BS03 4V4 1.14.13.39 GO:0004517 ... P29476 26120733 MOAD: Ki=130nM
    BindingDB: Ki=130nM
    276992 4ugz:A (2.076) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 26120733
    276993 4ugz:A (2.076) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 26120733
    276994 4ugz:B (2.076) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 26120733
    276995 4ugz:B (2.076) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 26120733
    276996 4ugz:B (2.076) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 26120733
    276997 4ugz:B (2.076) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 26120733
    276998 4ugz:B (2.076) BS05 4V4 1.14.13.39 GO:0004517 ... P29476 26120733 MOAD: Ki=130nM
    BindingDB: Ki=130nM
    276999 4uh0:A (2.039) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 26120733
    277000 4uh0:A (2.039) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 26120733

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).